| MMDBm0000016 | Alcaligenes faecalis subsp. faecalis NBRC 13111 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000327 | Paracoccus denitrificans | Eubacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000334 | Pseudomonas putida | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000337 | Ralstonia pickettii | Eubacteria | Proteobacteria | Human Feces | Microbial culture | Not Available |
| MMDBm0000346 | Methylorubrum extorquens | Eubacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0001066 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0001166 | Achromobacter xylosoxidans A8 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001183 | Acinetobacter sp. ADP1 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001855 | Methylobacillus flagellatus KT | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001862 | Methylobacterium extorquens AM1 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002190 | Vibrio furnissii NCTC 11218 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002391 | Pseudomonas aeruginosa PAO1 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002392 | Pseudomonas putida KT2440 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0435633 | Hyphomicrobium sp. X | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0453895 | Paracoccus versutus | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0453897 | Paracoccus yeei ATCC BAA-599 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0480821 | Achromobacter xylosoxidans NBRC 15126 = ATCC 27061 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0481922 | Alcaligenes faecalis subsp. faecalis NCIB 8687 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0483496 | Burkholderia cepacia GG4 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0504690 | Methylophilus methylotrophus | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0504774 | Methylovorus mays | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0505748 | Methyloversatilis universalis FAM5 | Eubacteria | Proteobacteria | Human Feces | Not Available | RHEA |
| MMDBm0580229 | Pseudomonas nitroreducens HBP1 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0580968 | Pseudomonas syringae pv. tomato | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0581042 | Pseudomonas sp. | Bacteria | Proteobacteria | Human Feces | Not Available | RHEA |
