| MMDBm0000010 | Aeromonas jandaei Riv2 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000011 | Aggregatibacter aphrophilus NJ8700 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000012 | Agrobacterium tumefaciens F2 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000105 | Citrobacter freundii ATCC 8090 = MTCC 1658 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000160 | Escherichia coli | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000190 | Haemophilus parainfluenzae T3T1 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000194 | Klebsiella aerogenes KCTC 2190 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000288 | Vibrio mimicus MB-451 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000342 | Mesorhizobium loti | Eubacteria | Proteobacteria | Human | Not Available | VMH |
| MMDBm0000361 | Zymomonas mobilis | Eubacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000363 | Enterobacter cloacae | Eubacteria | Proteobacteria | Human | Not Available | VMH |
| MMDBm0000369 | Shigella sonnei | Eubacteria | Proteobacteria | Human | Not Available | VMH |
| MMDBm0000370 | Aeromonas hydrophila | Eubacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0000890 | Parvularcula bermudensis | Eubacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0001030 | Agrobacterium tumefaciens | Eubacteria | Proteobacteria | Human | Not Available | VMH |
| MMDBm0001066 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0001067 | Klebsiella variicola | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001191 | Actinobacillus pleuropneumoniae serovar 5b str. L20 | Eubacteria | Proteobacteria | Pig | Metabolic reconstruction | VMH |
| MMDBm0001198 | Aeromonas hydrophila subsp. hydrophila ATCC 7966 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001199 | Aeromonas veronii B565 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001501 | Cronobacter sakazakii ATCC BAA-894 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001574 | Enterobacter asburiae LF7a | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001583 | Escherichia coli str. K-12 substr. MG1655 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001584 | Escherichia coli O157:H7 str. Sakai | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001593 | Escherichia coli SE11 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |