MiMeDB: Showing metabocard for 2-Keto-3-deoxy-D-gluconic acid (MMDBc0000388)

Microbial

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2020-12-10 18:36:40 UTC

Update Date

2022-08-31 06:03:00 UTC

Metabolite ID

MMDBc0000388

Metabolite Identification

Common Name

2-Keto-3-deoxy-D-gluconic acid

Description

2-Keto-3-deoxy-D-gluconic acid, also known as 2-dehydro-3-deoxy-D-galactonate, belongs to the class of organic compounds known as medium-chain keto acids and derivatives. These are keto acids with a 6 to 12 carbon atoms long side chain. 2-Keto-3-deoxy-D-gluconic acid exists in all living organisms, ranging from bacteria to humans. 2-Keto-3-deoxy-D-gluconic acid has been detected, but not quantified in, a few different foods, such as anatidaes (Anatidae), chickens (Gallus gallus), and domestic pigs (Sus scrofa domestica). This could make 2-keto-3-deoxy-D-gluconic acid a potential biomarker for the consumption of these foods. 2-Keto-3-deoxy-D-gluconic acid is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Based on a literature review very few articles have been published on 2-Keto-3-deoxy-D-gluconic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HEADER    PROTEIN                                 23-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-FEB-12         0                                  
HETATM    1  O   UNK     0       5.071  -8.817   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       6.405  -8.047   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       6.405  -6.507   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       7.738  -8.817   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       7.738 -10.357   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       9.072  -8.047   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      10.406  -8.817   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      10.406 -10.357   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      11.739  -8.047   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      11.739  -6.507   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      13.073  -8.817   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      14.406  -8.047   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11                                                            
MASTER        0    0    0    0    0    0    0    0   12    0   22    0
END

Synonyms

Value	Source
2-Dehydro-3-deoxy-D-galactonate	ChEBI
2-Dehydro-3-deoxy-D-galactonic acid	Generator
2-Keto-3-deoxy-D-gluconate	Generator
2-oxo-3-Deoxygalactonic acid	MeSH, HMDB
3-Deoxy-D-threo-hexulosonic acid	MeSH, HMDB

Molecular Formula

C₆H₁₀O₆

Average Mass

178.14

Monoisotopic Mass

178.047738052

IUPAC Name

(4R,5R)-4,5,6-trihydroxy-2-oxohexanoic acid

Traditional Name

(4R,5R)-4,5,6-trihydroxy-2-oxohexanoic acid

CAS Registry Number

Not Available

SMILES

OC[C@@H](O)[C@H](O)CC(=O)C(O)=O

InChI Identifier

InChI=1S/C6H10O6/c7-2-5(10)3(8)1-4(9)6(11)12/h3,5,7-8,10H,1-2H2,(H,11,12)/t3-,5-/m1/s1

InChI Key

WPAMZTWLKIDIOP-NQXXGFSBSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as medium-chain keto acids and derivatives. These are keto acids with a 6 to 12 carbon atoms long side chain.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Keto acids and derivatives

Sub Class

Medium-chain keto acids and derivatives

Direct Parent

Medium-chain keto acids and derivatives

Alternative Parents

Substituents

Medium-chain keto acid
Alpha-keto acid
Beta-hydroxy ketone
Alpha-hydroxy ketone
Secondary alcohol
Ketone
Polyol
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Primary alcohol
Organooxygen compound
Organic oxygen compound
Carbonyl group
Alcohol
Hydrocarbon derivative
Organic oxide
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

ketoaldonic acid (CHEBI:17028 )
hexonic acid (CHEBI:17028 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	134 g/L	ALOGPS
logP	-1.9	ALOGPS
logP	-1.8	ChemAxon
logS	-0.12	ALOGPS
pKa (Strongest Acidic)	2.91	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	115.06 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	36.32 m³·mol⁻¹	ChemAxon
Polarizability	15.54 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	splash10-0cnc-9200000000-ca7affd58ffff99e944a	2017-09-01	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (4 TMS) - 70eV, Positive	splash10-0kbf-9015500000-ab605becee17a221c24e	2017-10-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-03fu-1900000000-16261982c6a9c806a823	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-01p6-7900000000-504d11f169911538cb06	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-00dv-9200000000-8845066b3c1b409ba899	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-004i-3900000000-be420c7266318ce9735a	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-000i-9400000000-fd920a23173f050b910a	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-059f-9200000000-c9791ea5084cab37fd9f	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-0159-2900000000-2c431e61342e81eac473	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-0a4l-9100000000-645c0f5045ea3864800f	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-0006-9000000000-e067af341d49549e302c	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-01ox-6900000000-21416d75e74f20ddb83e	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0fkc-9400000000-222927084d2d04afb1d9	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-006x-9000000000-f04ea2cb2c4b2183144d	2021-09-22	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)		2021-09-25	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-23	341.7
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	270.5
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (void)	2025-10-23	45.5
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	246.4
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	272.3
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (void)	2025-10-23	312.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (void)	2025-10-23	723.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	668.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	842.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	161.5
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	312.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	178.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	41.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	357.7
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	633.7
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (void)	2025-10-23	63.5
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (void)	2025-10-23	210.3
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	854.8
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	592.5

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_1	C[Si](C)(C)OC[C@@H](O)[C@H](O)CC(=O)C(=O)O	standard non polar	2025-10-23	2087.74
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_2	C[Si](C)(C)O[C@H](CO)[C@H](O)CC(=O)C(=O)O	standard non polar	2025-10-23	1893.36
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_3	C[Si](C)(C)O[C@H](CC(=O)C(=O)O)[C@H](O)CO	standard non polar	2025-10-23	1966.37
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_4	C[Si](C)(C)OC(=O)C(=O)C[C@@H](O)[C@H](O)CO	standard non polar	2025-10-23	2045.69
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_5	C[Si](C)(C)OC(=C[C@@H](O)[C@H](O)CO)C(=O)O	standard non polar	2025-10-23	1964.28
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_6	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@H](O)CC(=O)C(=O)O	standard non polar	2025-10-23	1909.43
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_7	C[Si](C)(C)OC[C@@H](O)[C@@H](CC(=O)C(=O)O)O[Si](C)(C)C	standard non polar	2025-10-23	2208.78
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_8	C[Si](C)(C)OC[C@@H](O)[C@H](O)CC(=O)C(=O)O[Si](C)(C)C	standard non polar	2025-10-23	2149.8
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_9	C[Si](C)(C)OC[C@@H](O)[C@H](O)C=C(O[Si](C)(C)C)C(=O)O	standard non polar	2025-10-23	1507.71
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_10	C[Si](C)(C)O[C@H](CO)[C@@H](CC(=O)C(=O)O)O[Si](C)(C)C	standard non polar	2025-10-23	1466.62
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_11	C[Si](C)(C)OC(=O)C(=O)C[C@@H](O)[C@@H](CO)O[Si](C)(C)C	standard non polar	2025-10-23	1314.94
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_12	C[Si](C)(C)OC(=C[C@@H](O)[C@@H](CO)O[Si](C)(C)C)C(=O)O	standard non polar	2025-10-23	1964.35
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_13	C[Si](C)(C)OC(=O)C(=O)C[C@@H](O[Si](C)(C)C)[C@H](O)CO	standard non polar	2025-10-23	1930.24
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_14	C[Si](C)(C)OC(=C[C@@H](O[Si](C)(C)C)[C@H](O)CO)C(=O)O	standard non polar	2025-10-23	2081.82
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_15	C[Si](C)(C)OC(=O)C(=C[C@@H](O)[C@H](O)CO)O[Si](C)(C)C	standard non polar	2025-10-23	1606.27
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_16	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@@H](CC(=O)C(=O)O)O[Si](C)(C)C	standard non polar	2025-10-23	1289.7
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_17	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@H](O)CC(=O)C(=O)O[Si](C)(C)C	standard non polar	2025-10-23	1623.9
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_18	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@H](O)C=C(O[Si](C)(C)C)C(=O)O	standard non polar	2025-10-23	2158.51
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_19	C[Si](C)(C)OC[C@@H](O)[C@@H](CC(=O)C(=O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2446.93
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_20	C[Si](C)(C)OC[C@@H](O)[C@@H](C=C(O[Si](C)(C)C)C(=O)O)O[Si](C)(C)C	standard non polar	2025-10-23	1903.46
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_21	C[Si](C)(C)OC[C@@H](O)[C@H](O)C=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C	standard non polar	2025-10-23	1602.97
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_22	C[Si](C)(C)OC(=O)C(=O)C[C@@H](O[Si](C)(C)C)[C@@H](CO)O[Si](C)(C)C	standard non polar	2025-10-23	2982.3
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_23	C[Si](C)(C)OC(=C[C@@H](O[Si](C)(C)C)[C@@H](CO)O[Si](C)(C)C)C(=O)O	standard non polar	2025-10-23	1445.65
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_24	C[Si](C)(C)OC(=O)C(=C[C@@H](O)[C@@H](CO)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1893.08
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_25	C[Si](C)(C)OC(=O)C(=C[C@@H](O[Si](C)(C)C)[C@H](O)CO)O[Si](C)(C)C	standard non polar	2025-10-23	2308.1
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_26	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@@H](CC(=O)C(=O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2142.0
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_27	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@@H](C=C(O[Si](C)(C)C)C(=O)O)O[Si](C)(C)C	standard non polar	2025-10-23	2464.02
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_28	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@H](O)C=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C	standard non polar	2025-10-23	2258.13
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_29	C[Si](C)(C)OC[C@@H](O)[C@@H](C=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1620.14
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_30	C[Si](C)(C)OC(=O)C(=C[C@@H](O[Si](C)(C)C)[C@@H](CO)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2099.74
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_31	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@@H](C=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1246.85
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_1	C[Si](C)(C)OC[C@@H](O)[C@H](O)CC(=O)C(=O)O	standard polar	2025-10-23	2561.85
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_2	C[Si](C)(C)O[C@H](CO)[C@H](O)CC(=O)C(=O)O	standard polar	2025-10-23	1958.44
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_3	C[Si](C)(C)O[C@H](CC(=O)C(=O)O)[C@H](O)CO	standard polar	2025-10-23	1995.06
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_4	C[Si](C)(C)OC(=O)C(=O)C[C@@H](O)[C@H](O)CO	standard polar	2025-10-23	2830.21
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_5	C[Si](C)(C)OC(=C[C@@H](O)[C@H](O)CO)C(=O)O	standard polar	2025-10-23	2590.6
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_6	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@H](O)CC(=O)C(=O)O	standard polar	2025-10-23	2447.01
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_7	C[Si](C)(C)OC[C@@H](O)[C@@H](CC(=O)C(=O)O)O[Si](C)(C)C	standard polar	2025-10-23	2036.14
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_8	C[Si](C)(C)OC[C@@H](O)[C@H](O)CC(=O)C(=O)O[Si](C)(C)C	standard polar	2025-10-23	2133.03
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_9	C[Si](C)(C)OC[C@@H](O)[C@H](O)C=C(O[Si](C)(C)C)C(=O)O	standard polar	2025-10-23	2060.48
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_10	C[Si](C)(C)O[C@H](CO)[C@@H](CC(=O)C(=O)O)O[Si](C)(C)C	standard polar	2025-10-23	1758.08
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_11	C[Si](C)(C)OC(=O)C(=O)C[C@@H](O)[C@@H](CO)O[Si](C)(C)C	standard polar	2025-10-23	2020.65
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_12	C[Si](C)(C)OC(=C[C@@H](O)[C@@H](CO)O[Si](C)(C)C)C(=O)O	standard polar	2025-10-23	1590.35
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_13	C[Si](C)(C)OC(=O)C(=O)C[C@@H](O[Si](C)(C)C)[C@H](O)CO	standard polar	2025-10-23	1524.32
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_14	C[Si](C)(C)OC(=C[C@@H](O[Si](C)(C)C)[C@H](O)CO)C(=O)O	standard polar	2025-10-23	1728.56
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_15	C[Si](C)(C)OC(=O)C(=C[C@@H](O)[C@H](O)CO)O[Si](C)(C)C	standard polar	2025-10-23	2427.18
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_16	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@@H](CC(=O)C(=O)O)O[Si](C)(C)C	standard polar	2025-10-23	2662.14
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_17	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@H](O)CC(=O)C(=O)O[Si](C)(C)C	standard polar	2025-10-23	1855.63
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_18	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@H](O)C=C(O[Si](C)(C)C)C(=O)O	standard polar	2025-10-23	1734.94
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_19	C[Si](C)(C)OC[C@@H](O)[C@@H](CC(=O)C(=O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2647.03
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_20	C[Si](C)(C)OC[C@@H](O)[C@@H](C=C(O[Si](C)(C)C)C(=O)O)O[Si](C)(C)C	standard polar	2025-10-23	2260.21
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_21	C[Si](C)(C)OC[C@@H](O)[C@H](O)C=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C	standard polar	2025-10-23	1736.65
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_22	C[Si](C)(C)OC(=O)C(=O)C[C@@H](O[Si](C)(C)C)[C@@H](CO)O[Si](C)(C)C	standard polar	2025-10-23	3218.21
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_23	C[Si](C)(C)OC(=C[C@@H](O[Si](C)(C)C)[C@@H](CO)O[Si](C)(C)C)C(=O)O	standard polar	2025-10-23	1841.46
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_24	C[Si](C)(C)OC(=O)C(=C[C@@H](O)[C@@H](CO)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1951.06
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_25	C[Si](C)(C)OC(=O)C(=C[C@@H](O[Si](C)(C)C)[C@H](O)CO)O[Si](C)(C)C	standard polar	2025-10-23	2201.96
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_26	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@@H](CC(=O)C(=O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2266.23
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_27	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@@H](C=C(O[Si](C)(C)C)C(=O)O)O[Si](C)(C)C	standard polar	2025-10-23	1476.25
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_28	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@H](O)C=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C	standard polar	2025-10-23	1811.63
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_29	C[Si](C)(C)OC[C@@H](O)[C@@H](C=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1181.99
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_30	C[Si](C)(C)OC(=O)C(=C[C@@H](O[Si](C)(C)C)[C@@H](CO)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2071.45
Gas Chromatography	2-Keto-3-deoxy-D-gluconic acid_TMS_31	C[Si](C)(C)OC[C@@H](O[Si](C)(C)C)[C@@H](C=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2445.53

Biological Properties

Cellular Locations

Cytoplasm

Biospecimen Locations

Feces

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Name	SMPDB/PathBank	Species
D-Galacturonate degradation		Escherichia coli Escherichia coli SMS-3-5 Escherichia coli UTI89 Escherichia coli 55989 Escherichia coli SE11 Actinobacillus succinogenes 130Z Escherichia coli CFT073 Bacillus subtilis Klebsiella pneumoniae Bacillus amyloliquefaciens Roseburia intestinalis L1-82 Clostridium saccharoperbutylacetonicum N1-4(HMT) Salmonella enterica Clostridium acetobutylicum ATCC 824 Saccharopolyspora erythraea NRRL 2338 Bacillus halodurans C-125 Bacillus timonensis 10403023 Bacteroides caccae Bacteroides cellulosilyticus Bacteroides eggerthii Bacteroides ovatus Bacteroides stercoris Bacteroides stercoris ATCC 43183 Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 Bacteroides vulgatus Clostridium beijerinckii NCIMB 8052 Clostridium saccharolyticum Collinsella aerofaciens Dorea formicigenerans ATCC 27755 Dysgonomonas gadei ATCC BAA-286 Eubacterium eligens ATCC 27750 Parabacteroides goldsteinii dnLKV18 Prevotella ruminicola 23 Roseburia hominis A2-183 Xanthomonas campestris Mesorhizobium loti Sinorhizobium meliloti Citrobacter koseri Shigella boydii Shigella dysenteriae Shigella flexneri Shigella sonnei Bacteroides uniformis Ruminococcus albus Enterococcus gallinarum Bacillus licheniformis Priestia megaterium Bacillus pumilus Clostridium butyricum Lactobacillus sakei Thermotoga neapolitana Roseobacter denitrificans Enterococcus casseliflavus Eubacterium eligens Mitsuokella multacida Enterococcus durans Blautia hydrogenotrophica Holdemania filiformis Enterobacter cancerogenus Bacillus clausii Citrobacter youngae Prevotella copri Marvinbryantia formatexigens Escherichia albertii Bacteroides nordii Bacteroides plebeius Phocaeicola coprocola Bacteroides intestinalis Bacteroides salanitronis Bacteroides fluxus Bacteroides oleiciplenus Bacteroides faecis Alistipes shahii Bacteroides xylanisolvens Clostridium beijerinckii Dorea formicigenerans Dysgonomonas gadei Enterococcus faecium Klebsiella variicola Parabacteroides goldsteinii Prevotella ruminicola Bacillus megaterium QM B1551 Bacillus licheniformis ATCC 14580 Bacillus clausii KSM-K16 Bacillus amyloliquefaciens FZB42 Bacillus pumilus SAFR-032 Bacillus subtilis subsp. spizizenii str. W23 Bacillus amyloliquefaciens DSM 7 Citrobacter koseri ATCC BAA-895 Cronobacter sakazakii ATCC BAA-894 Dyadobacter fermentans DSM 18053 Enterobacter cloacae subsp. cloacae ATCC 13047 Escherichia coli APEC O1 Escherichia coli E24377A Escherichia coli O127:H6 str. E2348/69 Escherichia coli UMN026 Escherichia fergusonii ATCC 35469 Escherichia coli ED1a Escherichia coli IAI39 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Mesorhizobium loti MAFF303099 Escherichia coli 042 Edwardsiella tarda FL6-60 Rhizobium leguminosarum bv. viciae 3841 Rhizobium leguminosarum bv. trifolii WSM2304 Ruminococcus albus 7 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Dublin str. CT02021853 Shigella sonnei Ss046 Shigella flexneri 5 str. 8401 Spirosoma linguale DSM 74 Yersinia enterocolitica subsp. enterocolitica 8081 Yersinia pseudotuberculosis IP 31758 Bacteroides cellulosilyticus DSM 14838 Bacteroides eggerthii 1_2_48FAA Bacteroides fluxus YIT 12057 Bacteroides graminisolvens Bacteroides graminisolvens DSM 19988 = JCM 15093 Bacteroides intestinalis DSM 17393 Bacteroides nordii CL02T12C05 Bacteroides oleiciplenus YIT 12058 Bacteroides ovatus ATCC 8483 Bacteroides uniformis ATCC 8492 Bacteroides xylanisolvens SD CC 1b Bacteroides sp. 1_1_14 Bacteroides sp. 1_1_30 Bacteroides sp. 2_1_22 Bacteroides sp. 2_2_4 Bacteroides sp. D2 Bacteroides sp. D20 Bacteroides sp. D22 Paraprevotella clara YIT 11840 Paraprevotella xylaniphila YIT 11841 Prevotella buccae ATCC 33574 Prevotella salivae DSM 15606 Parabacteroides johnsonii DSM 18315 Bacteroides dorei DSM 17855 Spirosoma linguale Cetobacterium somerae ATCC BAA-474 Rhizobium etli Azorhizobium caulinodans Succinatimonas hippei Succinatimonas hippei YIT 12066 Succinivibrio dextrinosolvens Cedecea davisae Cedecea davisae DSM 4568 Citrobacter amalonaticus Citrobacter amalonaticus Y19 Citrobacter freundii Citrobacter youngae ATCC 29220 Enterobacter hormaechei Escherichia albertii TW07627 Klebsiella aerogenes Salmonella Salmonella enterica subsp. enterica serovar Typhimurium Trabulsiella guamensis Trabulsiella guamensis ATCC 49490 Edwardsiella tarda Edwardsiella tarda ATCC 23685 Hafnia alvei Hafnia alvei ATCC 51873 Morganella morganii Morganella morganii subsp. morganii KT Serratia marcescens subsp. marcescens Db11 Yersinia enterocolitica Yersinia pestis Yersinia pseudotuberculosis Vibrio fluvialis Vibrio fluvialis PG41 Cellulosimicrobium cellulans Olsenella profusa F0195 Collinsella tanakaei YIT 12063 Bacillus altitudinis Bacillus infantis NRRL B-14911 Paenibacillus lactis 154 Enterococcus asini ATCC 700915 Enterococcus casseliflavus ATCC 12755 Butyricicoccus pullicaecorum Butyricicoccus pullicaecorum 1.2 Clostridium butyricum E4 str. BoNT E BL5262 Blautia hydrogenotrophica DSM 10507 Clostridium asparagiforme DSM 15981 [Clostridium] bolteae ATCC BAA-613 Clostridium citroniae WAL-17108 Lachnospira multipara [Ruminococcus] gnavus ATCC 29149 Roseburia inulinivorans DSM 16841 Flavonifractor plautii ATCC 29863 [Bacteroides] pectinophilus ATCC 43243 Holdemania filiformis DSM 12042 Mitsuokella multacida DSM 20544 Megasphaera elsdenii Xanthomonas campestris pv. campestris str. ATCC 33913 Xanthomonas campestris pv. campestris str. B100 Xanthomonas campestris pv. campestris str. 8004 Lachnoclostridium phytofermentans ISDg Alkaliphilus metalliredigens QYMF Beutenbergia cavernae DSM 12333 Butyrivibrio proteoclasticus B316 Geobacillus thermodenitrificans NG80-2 Kineococcus radiotolerans SRS30216 Kribbella flavida DSM 17836 Saccharomonospora viridis DSM 43017 Sanguibacter keddieii DSM 10542 Thermoanaerobacter italicus Ab9 Thermoanaerobacterium thermosaccharolyticum DSM 571 Xylanimonas cellulosilytica DSM 15894 Acidipropionibacterium acidipropionici ATCC 4875 Bacteroides salanitronis DSM 18170 Klebsiella aerogenes KCTC 2190 Halanaerobium hydrogeniformans Acidobacterium capsulatum ATCC 51196 Agrobacterium vitis S4 Azorhizobium caulinodans ORS 571 Mannheimia succiniciproducens MBEL55E Brucella melitensis bv. 1 str. 16M Brucella canis ATCC 23365 Brucella abortus S19 Brucella microti CCM 4915 Caulobacter crescentus CB15 Caulobacter crescentus NA1000 Caulobacter segnis ATCC 21756 Clostridium lentocellum DSM 5427 Cellvibrio japonicus Ueda107 Chitinophaga pinensis DSM 2588 Citrobacter rodentium ICC168 Cronobacter turicensis z3032 Dickeya dadantii Ech703 Dickeya zeae Ech1591 Dickeya dadantii Ech586 Dickeya dadantii 3937 Edwardsiella ictaluri 93-146 Enterobacter sp. 638 Enterobacter cloacae SCF1 Erwinia billingiae Eb661 Haloterrigena turkmenica DSM 5511 Klebsiella pneumoniae 342 Leadbetterella byssophila DSM 17132 Maricaulis maris MCS10 Novosphingobium aromaticivorans DSM 12444 Pantoea ananatis LMG 20103 Pectobacterium atrosepticum SCRI1043 Pectobacterium carotovorum subsp. carotovorum PC1 Pedobacter heparinus DSM 2366 Phenylobacterium zucineum HLK1 Photobacterium profundum SS9 Rhizobium etli CFN 42 Rhizobium etli CIAT 652 Rhizobium leguminosarum bv. trifolii WSM1325 Roseobacter denitrificans OCh 114 Roseobacter litoralis Och 149 Saccharophagus degradans 2-40 Salmonella enterica subsp. enterica serovar Paratyphi A str. Sebaldella termitidis ATCC 33386 Shigella flexneri 2a str. 301 Shigella boydii CDC 3083-94 Sinorhizobium meliloti 1021 Sinorhizobium medicae WSM419 Sphingopyxis alaskensis RB2256 Teredinibacter turnerae T7901 Thermotoga neapolitana DSM 4359 Tolumonas auensis DSM 9187 Treponema brennaborense DSM 12168 Zunongwangia profunda SM-A87 Atlantibacter hermannii NBRC 105704 Klebsiella michiganensis KCTC 1686 Chania multitudinisentens RB-25 Hungatella hathewayi DSM 13479
Hexuronide and Hexuronate Degradation		Escherichia coli Escherichia coli SMS-3-5 Escherichia coli UTI89 Escherichia coli 55989 Escherichia coli SE11 Actinobacillus succinogenes 130Z Escherichia coli CFT073 Ochrobactrum anthropi Bacillus subtilis Pseudomonas stutzeri Klebsiella pneumoniae Bacillus amyloliquefaciens Roseburia intestinalis L1-82 Clostridium saccharoperbutylacetonicum N1-4(HMT) Salmonella enterica Clostridium acetobutylicum ATCC 824 Haemophilus influenzae Clostridium perfringens Saccharopolyspora erythraea NRRL 2338 Anaerococcus prevotii DSM 20548 Anaerostipes hadrus Bacillus halodurans C-125 Bacillus timonensis 10403023 Bacteroides caccae Bacteroides cellulosilyticus Bacteroides eggerthii Bacteroides fragilis Bacteroides fragilis 638R Bacteroides fragilis YCH46 Bacteroides ovatus Bacteroides stercoris Bacteroides stercoris ATCC 43183 Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 Bacteroides vulgatus Bacteroides xylanisolvens XB1A Blautia hansenii DSM 20583 Brevibacillus brevis NBRC 100599 Clostridium beijerinckii NCIMB 8052 Clostridium saccharolyticum Collinsella aerofaciens Dorea formicigenerans ATCC 27755 Dysgonomonas gadei ATCC BAA-286 Enterococcus faecalis Eubacterium eligens ATCC 27750 Lactobacillus paracasei Methylobacterium nodulans Ochrobactrum anthropi ATCC 49188 Ochrobactrum intermedium LMG 3301 Parabacteroides distasonis Parabacteroides distasonis ATCC 8503 Parabacteroides goldsteinii dnLKV18 Prevotella ruminicola 23 Roseburia hominis A2-183 Spirochaeta thermophila Burkholderia cepacia Pseudomonas fluorescens Pseudomonas syringae Xanthomonas campestris Bradyrhizobium japonicum Mesorhizobium loti Sinorhizobium meliloti Acidiphilium cryptum Citrobacter koseri Shigella boydii Shigella dysenteriae Shigella flexneri Shigella sonnei Aeromonas hydrophila Vibrio vulnificus Bacteroides uniformis Ruminococcus albus Streptococcus agalactiae Streptococcus dysgalactiae Streptococcus equinus Streptococcus equi Streptococcus uberis Enterococcus gallinarum Bacillus licheniformis Priestia megaterium Bacillus pumilus Clostridium butyricum Moorella thermoacetica Lactobacillus delbrueckii Lactobacillus plantarum Lactobacillus sakei Actinomyces viscosus Corynebacterium glutamicum Thermotoga neapolitana Roseobacter denitrificans Caldicellulosiruptor bescii Enterococcus avium Enterococcus casseliflavus Eubacterium eligens Eubacterium ramulus Actinosynnema mirum Caldicellulosiruptor saccharolyticus Enterococcus cecorum Mitsuokella multacida Brachyspira pilosicoli Enterococcus durans Blautia hydrogenotrophica Burkholderia vietnamiensis Holdemania filiformis Sodalis glossinidius Enterobacter cancerogenus Bacillus clausii Bacillus pseudofirmus Achromobacter xylosoxidans Burkholderia multivorans Burkholderia cenocepacia Citrobacter youngae Burkholderia ambifaria Prevotella copri Ilyobacter polytropus Marvinbryantia formatexigens Bacteroides massiliensis Escherichia albertii Subdoligranulum variabile Bacteroides nordii Bacteroides plebeius Phocaeicola coprocola Bacteroides intestinalis Bacteroides salanitronis Coprococcus comes Actinomyces oris Bacteroides fluxus Bacteroides oleiciplenus Bacteroides faecis Agrobacterium tumefaciens Alistipes shahii Bacteroides helcogenes Bacteroides xylanisolvens Blautia hansenii Clostridium beijerinckii Dorea formicigenerans Dysgonomonas gadei Enterococcus faecium Klebsiella variicola Lactobacillus rhamnosus Lactococcus lactis Parabacteroides goldsteinii Prevotella ruminicola Granulicatella adiacens Achromobacter xylosoxidans A8 Actinobacillus pleuropneumoniae serovar 5b str. L20 Actinobacillus pleuropneumoniae serovar 3 str. JL03 Actinobacillus pleuropneumoniae serovar 7 str. AP76 Aeromonas hydrophila subsp. hydrophila ATCC 7966 Agrobacterium tumefaciens str. C58 Arcanobacterium haemolyticum DSM 20595 Bacillus megaterium QM B1551 Bacillus licheniformis ATCC 14580 Bacillus clausii KSM-K16 Bacillus amyloliquefaciens FZB42 Bacillus pumilus SAFR-032 Priestia megaterium DSM 319 Bacillus subtilis subsp. spizizenii str. W23 Bacillus amyloliquefaciens DSM 7 Bradyrhizobium japonicum USDA 110 Citrobacter koseri ATCC BAA-895 Clostridium perfringens str. 13 Cronobacter sakazakii ATCC BAA-894 Delftia acidovorans SPH-1 Dyadobacter fermentans DSM 18053 Enterobacter cloacae subsp. cloacae ATCC 13047 Escherichia coli APEC O1 Escherichia coli E24377A Escherichia coli O127:H6 str. E2348/69 Escherichia coli UMN026 Escherichia fergusonii ATCC 35469 Escherichia coli ED1a Escherichia coli IAI39 Haemophilus influenzae 86-028NP Haemophilus influenzae PittGG Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Lactobacillus plantarum WCFS1 Lactobacillus sakei subsp. sakei 23K Lactobacillus brevis ATCC 367 Lactobacillus casei ATCC 334 Lactococcus lactis subsp. lactis Il1403 Lactococcus lactis subsp. cremoris SK11 Lactococcus lactis subsp. cremoris MG1363 Mesorhizobium loti MAFF303099 Escherichia coli 042 Edwardsiella tarda FL6-60 Pseudomonas fluorescens Pf0-1 Pseudomonas fluorescens SBW25 Rhizobium leguminosarum bv. viciae 3841 Rhizobium leguminosarum bv. trifolii WSM2304 Ruminococcus albus 7 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Dublin str. CT02021853 Shigella sonnei Ss046 Shigella dysenteriae Sd197 Shigella flexneri 5 str. 8401 Spirosoma linguale DSM 74 Staphylococcus haemolyticus JCSC1435 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Streptococcus agalactiae 2603V/R Streptococcus agalactiae NEM316 Streptococcus uberis 0140J Streptococcus equi subsp. equi 4047 Sulfolobus solfataricus P2 Vibrio parahaemolyticus RIMD 2210633 Yersinia enterocolitica subsp. enterocolitica 8081 Yersinia pseudotuberculosis IP 31758 Bacteroides cellulosilyticus DSM 14838 Bacteroides eggerthii 1_2_48FAA Bacteroides fluxus YIT 12057 Bacteroides graminisolvens Bacteroides graminisolvens DSM 19988 = JCM 15093 Bacteroides intestinalis DSM 17393 Bacteroides nordii CL02T12C05 Bacteroides oleiciplenus YIT 12058 Bacteroides ovatus ATCC 8483 Bacteroides uniformis ATCC 8492 Bacteroides xylanisolvens SD CC 1b Bacteroides sp. 1_1_14 Bacteroides sp. 1_1_30 Bacteroides sp. 2_1_22 Bacteroides sp. 2_2_4 Bacteroides sp. D2 Bacteroides sp. D20 Bacteroides sp. D22 Odoribacter laneus YIT 12061 Paraprevotella clara YIT 11840 Paraprevotella xylaniphila YIT 11841 Prevotella buccae ATCC 33574 Prevotella salivae DSM 15606 Alistipes indistinctus YIT 12060 Parabacteroides johnsonii DSM 18315 Parabacteroides sp. D13 Bacteroides dorei DSM 17855 Spirosoma linguale Cetobacterium somerae ATCC BAA-474 Rhizobium etli Azorhizobium caulinodans Xanthobacter autotrophicus Burkholderia cepacia GG4 Aeromonas caviae Aeromonas media Aeromonas veronii Succinatimonas hippei Succinatimonas hippei YIT 12066 Succinivibrio dextrinosolvens Cedecea davisae Cedecea davisae DSM 4568 Citrobacter amalonaticus Citrobacter amalonaticus Y19 Citrobacter freundii Citrobacter youngae ATCC 29220 Enterobacter hormaechei Escherichia albertii TW07627 Klebsiella aerogenes Salmonella Salmonella enterica subsp. enterica serovar Typhimurium Trabulsiella guamensis Trabulsiella guamensis ATCC 49490 Edwardsiella tarda Edwardsiella tarda ATCC 23685 Hafnia alvei Hafnia alvei ATCC 51873 Morganella morganii Morganella morganii subsp. morganii KT Serratia marcescens subsp. marcescens Db11 Yersinia enterocolitica Yersinia pestis Yersinia pseudotuberculosis Actinobacillus pleuropneumoniae Grimontia hollisae CIP 101886 Vibrio fluvialis Vibrio fluvialis PG41 Vibrio parahaemolyticus Vibrio mimicus Brachyspira pilosicoli B2904 Acetomicrobium hydrogeniformans Actinomyces naeslundii Actinomyces naeslundii str. Howell 279 Actinomyces urogenitalis DSM 15434 Trueperella pyogenes Corynebacterium durum Corynebacterium durum F0235 Microbacterium oleivorans Cellulosimicrobium cellulans Propionibacterium Olsenella profusa F0195 Collinsella tanakaei YIT 12063 Bacillus altitudinis Bacillus infantis NRRL B-14911 Paenibacillus lactis 154 Granulicatella adiacens ATCC 49175 Enterococcus asini ATCC 700915 Enterococcus casseliflavus ATCC 12755 Enterococcus cecorum DSM 20682 = ATCC 43198 Enterococcus phoeniculicola ATCC BAA-412 Lactobacillus paracasei subsp. paracasei 8700:2 Lactobacillus rhamnosus LMS2-1 Lactobacillus hilgardii DSM 20176 = ATCC 8290 Lactobacillus coleohominis 101-4-CHN Lactobacillus coryniformis subsp. coryniformis CECT 5711 Pediococcus acidilactici DSM 20284 Weissella cibaria Streptococcus equi subsp. zooepidemicus H70 Streptococcus equi subsp. zooepidemicus MGCS10565 Butyricicoccus pullicaecorum Butyricicoccus pullicaecorum 1.2 Clostridium butyricum E4 str. BoNT E BL5262 Clostridium celatum DSM 1785 Clostridium sartagoforme AAU1 Eubacterium ramulus ATCC 29099 Blautia hydrogenotrophica DSM 10507 Blautia wexlerae Coprococcus comes ATCC 27758 Clostridium asparagiforme DSM 15981 [Clostridium] bolteae ATCC BAA-613 Clostridium citroniae WAL-17108 Lachnospira multipara [Ruminococcus] gnavus ATCC 29149 [Ruminococcus] lactaris ATCC 29176 Roseburia inulinivorans DSM 16841 Flavonifractor plautii ATCC 29863 Pseudoflavonifractor capillosus ATCC 29799 Subdoligranulum variabile DSM 15176 [Clostridium] leptum DSM 753 [Bacteroides] pectinophilus ATCC 43243 Holdemania filiformis DSM 12042 Mitsuokella multacida DSM 20544 Megasphaera elsdenii Peptoniphilus indolicus ATCC 29427 Ralstonia eutropha H16 Xanthomonas campestris pv. campestris str. ATCC 33913 Xanthomonas campestris pv. campestris str. B100 Xanthomonas campestris pv. campestris str. 8004 Vibrio cholerae M66-2 Corynebacterium glutamicum ATCC 13032 Clostridioides difficile 630 Clostridioides difficile NAP08 Bifidobacterium longum subsp. infantis Lachnoclostridium phytofermentans ISDg Streptococcus pasteurianus ATCC 43144 Streptococcus suis GZ1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Alkaliphilus metalliredigens QYMF Arthrobacter sp. FB24 Arthrobacter aurescens TC1 Arthrobacter chlorophenolicus A6 Beutenbergia cavernae DSM 12333 Butyrivibrio proteoclasticus B316 Caldicellulosiruptor bescii DSM 6725 Clostridium cellulolyticum H10 Conexibacter woesei DSM 14684 Corynebacterium glutamicum R Deinococcus geothermalis DSM 11300 Frankia sp. EuI1c Geobacillus kaustophilus HTA426 Geobacillus thermodenitrificans NG80-2 Intrasporangium calvum DSM 43043 Jonesia denitrificans DSM 20603 Kineococcus radiotolerans SRS30216 Kribbella flavida DSM 17836 Oceanobacillus iheyensis HTE831 Caldicellulosiruptor saccharolyticus DSM 8903 Dictyoglomus turgidum DSM 6724 Thermobaculum terrenum ATCC BAA-798 Renibacterium salmoninarum ATCC 33209 Rhodococcus jostii RHA1 Saccharomonospora viridis DSM 43017 Sanguibacter keddieii DSM 10542 Staphylococcus carnosus subsp. carnosus TM300 Streptococcus equi subsp. zooepidemicus Streptococcus suis BM407 Streptomyces violaceusniger Tu 4113 Streptosporangium roseum DSM 43021 Thermoanaerobacter sp. X514 Thermoanaerobacter pseudethanolicus ATCC 33223 Thermoanaerobacter italicus Ab9 Thermoanaerobacterium thermosaccharolyticum DSM 571 Xylanimonas cellulosilytica DSM 15894 Aspergillus phoenicis Aspergillus aculeatus ATCC 16872 Aspergillus niger ATCC 1015 Aspergillus taichungensis Aspergillus tubingensis Penicillium canescens Penicillium chermesinum Penicillium italicum Fusarium acutatum Fusarium fujikuroi IMI 58289 Fusarium proliferatum ET1 Fusarium subglutinans Fusarium heterosporum Fusarium equiseti Fusarium sporotrichioides Fusarium vanettenii Fusarium vanettenii 77-13-4 Paraburkholderia graminis C4D1M Acidipropionibacterium acidipropionici ATCC 4875 Anaerobutyricum hallii DSM 3353 Bacteroides helcogenes P 36-108 Bacteroides salanitronis DSM 18170 Klebsiella aerogenes KCTC 2190 Halanaerobium hydrogeniformans Acidiphilium cryptum JF-5 Acidiphilium multivorum AIU301 Acidobacterium capsulatum ATCC 51196 Agrobacterium vitis S4 Agrobacterium radiobacter K84 Rhodoferax ferrireducens T118 Azorhizobium caulinodans ORS 571 Azotobacter vinelandii DJ Mannheimia succiniciproducens MBEL55E Bordetella petrii DSM 12804 Brachyspira hyodysenteriae WA1 Brachyspira murdochii DSM 12563 Brachyspira pilosicoli 95/1000 Bradyrhizobium sp. ORS278 Bradyrhizobium sp. BTAi1 Brucella melitensis bv. 1 str. 16M Brucella abortus bv. 1 str. 9-941 Brucella ovis ATCC 25840 Brucella canis ATCC 23365 Brucella suis ATCC 23445 Brucella abortus S19 Brucella melitensis ATCC 23457 Brucella microti CCM 4915 Burkholderia pseudomallei 1710b Burkholderia sp. 383 Burkholderia xenovorans LB400 Burkholderia ambifaria AMMD Burkholderia pseudomallei 1106a Burkholderia vietnamiensis G4 Burkholderia cenocepacia MC0-3 Burkholderia ambifaria MC40-6 Burkholderia phymatum STM815 Burkholderia phytofirmans PsJN Burkholderia cenocepacia J2315 Candidatus Koribacter versatilis Ellin345 Caulobacter crescentus CB15 Caulobacter crescentus NA1000 Caulobacter segnis ATCC 21756 Cellulophaga algicola DSM 14237 Clostridium lentocellum DSM 5427 Cellvibrio japonicus Ueda107 Chitinophaga pinensis DSM 2588 Chromohalobacter salexigens DSM 3043 Citrobacter rodentium ICC168 Cronobacter turicensis z3032 Cupriavidus taiwanensis LMG 19424 Deinococcus deserti VCD115 Dickeya dadantii Ech703 Dickeya zeae Ech1591 Dickeya dadantii Ech586 Dickeya dadantii 3937 Dinoroseobacter shibae DFL 12 Edwardsiella ictaluri 93-146 Enterobacter sp. 638 Enterobacter cloacae SCF1 Erwinia tasmaniensis Et1/99 Erwinia amylovora CFBP1430 Erwinia billingiae Eb661 Gramella forsetii KT0803 Halorhabdus utahensis DSM 12940 Haloterrigena turkmenica DSM 5511 Ilyobacter polytropus DSM 2926 Klebsiella pneumoniae 342 Leadbetterella byssophila DSM 17132 Leifsonia xyli subsp. xyli str. CTCB07 Leptothrix cholodnii SP-6 Maricaulis maris MCS10 Marinomonas posidonica IVIA-Po-181 Methylobacterium nodulans ORS 2060 Microbacterium testaceum StLB037 Nostoc punctiforme PCC 73102 Novosphingobium aromaticivorans DSM 12444 Xanthomonas axonopodis pv. citri str. 306 Sodalis glossinidius str. 'morsitans' Sorangium cellulosum 'So ce 56' Opitutus terrae PB90-1 Alteromonas macleodii str. 'Deep ecotype' Pantoea ananatis LMG 20103 Paracoccus denitrificans PD1222 Pectobacterium atrosepticum SCRI1043 Pectobacterium carotovorum subsp. carotovorum PC1 Pedobacter heparinus DSM 2366 Phenylobacterium zucineum HLK1 Photobacterium profundum SS9 Photorhabdus luminescens subsp. laumondii TTO1 Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 Polaromonas sp. JS666 Polaromonas naphthalenivorans CJ2 Pseudomonas syringae pv. tomato str. DC3000 Pseudomonas syringae pv. phaseolicola 1448A Pseudomonas syringae pv. syringae B728a Pseudomonas entomophila L48 Psychromonas ingrahamii 37 Ralstonia solanacearum GMI1000 Rhizobium etli CFN 42 Rhizobium etli CIAT 652 Rhizobium leguminosarum bv. trifolii WSM1325 Rhodopirellula baltica SH 1 Rhodothermus marinus DSM 4252 Roseobacter denitrificans OCh 114 Roseobacter litoralis Och 149 Ruegeria pomeroyi DSS-3 Ruegeria sp. TM1040 Saccharophagus degradans 2-40 Salmonella enterica subsp. enterica serovar Paratyphi A str. Sebaldella termitidis ATCC 33386 Shigella flexneri 2a str. 301 Shigella boydii Sb227 Shigella boydii CDC 3083-94 Sinorhizobium meliloti 1021 Sinorhizobium medicae WSM419 Sphingobium japonicum UT26S Sphingomonas wittichii RW1 Sphingopyxis alaskensis RB2256 Spirochaeta thermophila DSM 6192 Streptobacillus moniliformis DSM 12112 Teredinibacter turnerae T7901 Thermotoga petrophila RKU-1 Thermotoga sp. RQ2 Thermotoga neapolitana DSM 4359 Tolumonas auensis DSM 9187 Treponema brennaborense DSM 12168 Variovorax paradoxus EPS Verminephrobacter eiseniae EF01-2 Vibrio vulnificus CMCP6 Vibrio vulnificus YJ016 Xanthobacter autotrophicus Py2 Xanthomonas oryzae pv. oryzae KACC10331 Xanthomonas campestris pv. vesicatoria str. 85-10 Xanthomonas oryzae pv. oryzae PXO99A Zunongwangia profunda SM-A87 Sphingobacterium paucimobilis HER1398 Atlantibacter hermannii NBRC 105704 Klebsiella michiganensis KCTC 1686 Chania multitudinisentens RB-25 Hungatella hathewayi DSM 13479
Inner Membrane Transport

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0018316	Galactonic acid	2-Keto-3-deoxy-D-gluconic acid	D-galactonate dehydratase	Hydration/dehydration of C-O bond	PathBank	31602464
MMDBr0018317	2-Keto-3-deoxy-D-gluconic acid	2-Dehydro-3-deoxy-D-galactonate 6-phosphate	2-dehydro-3-deoxygalactonokinase	Phosphorylation	PathBank	31602464
MMDBr0018404	D-Mannonate	2-Keto-3-deoxy-D-gluconic acid	Mannonate dehydratase	Hydration/dehydration of C-O bond	PathBank	31602464
MMDBr0018405	D-Altronate	2-Keto-3-deoxy-D-gluconic acid	Altronate dehydratase	Hydration/dehydration of C-O bond	PathBank	31602464
MMDBr0018408	2-Keto-3-deoxy-D-gluconic acid	2-Keto-3-deoxy-6-phosphogluconic acid	2-dehydro-3-deoxygluconokinase	Phosphorylation	PathBank	31602464

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Bacteroidetes	2	Human feces	Indirect association between microbiota composition and metabolites measured in host biospecimen
Bacteria/Eubacteria	Actinobacteria	1	Human ; Human feces; Human sputum; Human saliva; Human supragingival plaque; Human subgingival plaque	Indirect association between microbiota composition and metabolites measured in host biospecimen
Bacteria	Proteobacteria	1	Human ; Human feces
Bacteria/Eubacteria	Proteobacteria	45	Human ; Human feces
Archaea	Crenarchaeota	1
Archaea/Archaea	Euryarchaeota	2

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified						Adult (>18 years old)	Both	Normal	HMDB	29808030

External Links

HMDB ID

HMDB0001353

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB022572

KNApSAcK ID

Not Available

Chemspider ID

168361

KEGG Compound ID

C01216

BioCyc ID

2-DEHYDRO-3-DEOXY-D-GLUCONATE

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

6184

PubChem Compound

194024

PDB ID

Not Available

ChEBI ID

17028

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Wishart DS, Li C, Marcu A, Badran H, Pon A, Budinski Z, Patron J, Lipton D, Cao X, Oler E, Li K, Paccoud M, Hong C, Guo AC, Chan C, Wei W, Ramirez-Gaona M: PathBank: a comprehensive pathway database for model organisms. Nucleic Acids Res. 2020 Jan 8;48(D1):D470-D478. doi: 10.1093/nar/gkz861. [PubMed:31602464 ]
Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for 2-Keto-3-deoxy-D-gluconic acid (MMDBc0000388)

MOL for #<Metabolite:0x00007f9ab4f07a48>

3D MOL for #<Metabolite:0x00007f9ab4f07a48>

3D SDF for #<Metabolite:0x00007f9ab4f07a48>

3D-SDF for #<Metabolite:0x00007f9ab4f07a48>

PDB for #<Metabolite:0x00007f9ab4f07a48>

3D PDB for #<Metabolite:0x00007f9ab4f07a48>

SMILES for #<Metabolite:0x00007f9ab4f07a48>

INCHI for #<Metabolite:0x00007f9ab4f07a48>

Structure for #<Metabolite:0x00007f9ab4f07a48>

3D Structure for #<Metabolite:0x00007f9ab4f07a48>