| MMDBm0000015 | Akkermansia muciniphila ATCC BAA-835 | Eubacteria | Verrucomicrobia | Human | Microbial culture | CMMC-Kb |
| MMDBm0000046 | Bacteroides fragilis NCTC 9343 | Eubacteria | Bacteroidetes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000051 | Bacteroides salanitronis DSM 18170 | Eubacteria | Bacteroidetes | Chicken | Microbial culture | CMMC-Kb |
| MMDBm0000054 | Bacteroides thetaiotaomicron | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000057 | Bacteroides vulgatus ATCC 8482 | Eubacteria | Bacteroidetes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000074 | Bifidobacterium longum | Eubacteria | Actinobacteria | Human | Microbial culture | CMMC-Kb |
| MMDBm0000132 | Clostridium perfringens ATCC 13124 | Eubacteria | Firmicutes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000141 | Collinsella aerofaciens | Eubacteria | Actinobacteria | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000179 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000208 | Lactobacillus rhamnosus ATCC 8530 | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000230 | Paeniclostridium sordellii | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000376 | Bacteroides uniformis | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000383 | Fusobacterium mortiferum | Eubacteria | Fusobacteria | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000419 | Finegoldia magna | Eubacteria | Firmicutes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000490 | Erysipelatoclostridium ramosum | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000498 | Lactobacillus plantarum | Eubacteria | Firmicutes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000606 | Prevotella bivia | Eubacteria | Bacteroidetes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000607 | Prevotella buccae | Eubacteria | Bacteroidetes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000609 | Prevotella disiens | Eubacteria | Bacteroidetes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000658 | Lactobacillus johnsonii | Eubacteria | Firmicutes | Human | Microbial culture | CMMC-Kb |
| MMDBm0001032 | Alistipes shahii | Eubacteria | Bacteroidetes | Human Appendix biopsy | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001049 | Campylobacter jejuni | Eubacteria | Proteobacteria | Human | Microbial culture | CMMC-Kb |
| MMDBm0001069 | Lactobacillus acidophilus | Eubacteria | Firmicutes | Human | Microbial culture | CMMC-Kb |
| MMDBm0001094 | Clostridium ramosum | Eubacteria | Firmicutes | Not Available | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001125 | Subdoligranulum | Eubacteria | Firmicutes | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |