MiMeDB: Showing metabocard for (+)-caryolan-1-ol (MMDBc0002931)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-14 21:07:18 UTC

Update Date

2025-10-07 16:04:39 UTC

Metabolite ID

MMDBc0002931

Metabolite Identification

Common Name

(+)-caryolan-1-ol

Description

(+)-caryolan-1-ol is a sesquiterpenoid alcohol belonging to the chemical class of terpenes. This metabolite has garnered attention in the field of biochemistry for its role in the biosynthesis of complex terpenes. Specifically, research has focused on the enzyme (+)-caryolan-1-ol synthase (CS) from Streptomyces griseus, which catalyzes the formation of (+)-caryolan-1-ol through anti-Markovnikov cyclization reactions. The elucidation of the X-ray crystal structure of this enzyme, both in the presence and absence of an inactive analog of its substrate farnesyl diphosphate (2-fluorofarnesyl diphosphate), has provided insights into the reaction mechanisms employed by terpene synthases. These findings contribute to a deeper understanding of how such enzymes facilitate the synthesis of diverse terpenoid compounds, which are significant in various biological processes and applications, including their roles in plant defense and as precursors to bioactive molecules. (PMID:38746203 )

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305142123072D          

 18 20  0  0  1  0            999 V2000
    4.1538    0.1065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4912    1.0667    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0468    1.7674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2932   -0.3933    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1233    1.1213    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1555    0.4202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9216   -0.9278    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3500    1.4087    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1936   -0.5562    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4178    0.2459    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5309    0.4040    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3821   -0.4075    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3424    0.2552    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5728    1.1318    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7465   -0.9335    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0234   -1.7106    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7175    0.2663    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5902   -1.2058    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  4  1  0  0  0  0
  7  4  1  0  0  0  0
  8  5  1  0  0  0  0
 11  5  1  0  0  0  0
 12  9  1  0  0  0  0
 12 11  1  0  0  0  0
 13  1  1  0  0  0  0
 13  2  1  0  0  0  0
 13  9  1  0  0  0  0
 13 11  1  0  0  0  0
 14  3  1  1  0  0  0
 14  6  1  0  0  0  0
 14  8  1  0  0  0  0
 14 10  1  0  0  0  0
 15  7  1  0  0  0  0
 15 10  1  0  0  0  0
 15 12  1  0  0  0  0
 15 16  1  1  0  0  0
 11 17  1  1  0  0  0
 12 18  1  6  0  0  0
M  END
> <DATABASE_ID>
MMDBc0002931

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@]12CC(C)(C)[C@@]1([H])CC[C@@]1(C)CCC[C@]2(O)C1

> <INCHI_IDENTIFIER>
InChI=1S/C15H26O/c1-13(2)9-12-11(13)5-8-14(3)6-4-7-15(12,16)10-14/h11-12,16H,4-10H2,1-3H3/t11-,12+,14+,15-/m0/s1

> <INCHI_KEY>
FUQAYSQLAOJBBC-MXYBEHONSA-N

> <FORMULA>
C15H26O

> <MOLECULAR_WEIGHT>
222.372

> <EXACT_MASS>
222.198365457

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
27.43838101200247

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,2R,5S,8R)-4,4,8-trimethyltricyclo[6.3.1.0^{2,5}]dodecan-1-ol

> <ALOGPS_LOGP>
3.52

> <JCHEM_LOGP>
3.427033741333333

> <ALOGPS_LOGS>
-4.38

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-0.18952770320995593

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
66.50189999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.33e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2R,5S,8R)-4,4,8-trimethyltricyclo[6.3.1.0^{2,5}]dodecan-1-ol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 14-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   14-MAY-21         0                                  
HETATM    1  C   UNK     0       7.754   0.199   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.517   1.991   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.087   3.299   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.547  -0.734   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.963   2.093   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.290   0.784   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.720  -1.732   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.520   2.630   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.961  -1.038   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.647   0.459   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.724   0.754   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.447  -0.761   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.239   0.476   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.069   2.113   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.260  -1.742   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       3.777  -3.193   0.000  0.00  0.00           O+0
HETATM   17  H   UNK     0       3.206   0.497   0.000  0.00  0.00           H+0
HETATM   18  H   UNK     0       4.835  -2.251   0.000  0.00  0.00           H+0
CONECT    1   13                                                            
CONECT    2   13                                                            
CONECT    3   14                                                            
CONECT    4    6    7                                                       
CONECT    5    8   11                                                       
CONECT    6    4   14                                                       
CONECT    7    4   15                                                       
CONECT    8    5   14                                                       
CONECT    9   12   13                                                       
CONECT   10   14   15                                                       
CONECT   11    5   12   13   17                                             
CONECT   12    9   11   15   18                                             
CONECT   13    1    2    9   11                                             
CONECT   14    3    6    8   10                                             
CONECT   15    7   10   12   16                                             
CONECT   16   15                                                            
CONECT   17   11                                                            
CONECT   18   12                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   40    0
END

Synonyms

Value	Source
(+)-beta-Caryophyllene alcohol	ChEBI
(+)-b-Caryophyllene alcohol	Generator
(+)-Β-caryophyllene alcohol	Generator

Molecular Formula

C₁₅H₂₆O

Average Mass

222.372

Monoisotopic Mass

222.198365457

IUPAC Name

(1S,2R,5S,8R)-4,4,8-trimethyltricyclo[6.3.1.0^{2,5}]dodecan-1-ol

Traditional Name

(1S,2R,5S,8R)-4,4,8-trimethyltricyclo[6.3.1.0^{2,5}]dodecan-1-ol

CAS Registry Number

Not Available

SMILES

[H][C@@]12CC(C)(C)[C@@]1([H])CC[C@@]1(C)CCC[C@]2(O)C1

InChI Identifier

InChI=1S/C15H26O/c1-13(2)9-12-11(13)5-8-14(3)6-4-7-15(12,16)10-14/h11-12,16H,4-10H2,1-3H3/t11-,12+,14+,15-/m0/s1

InChI Key

FUQAYSQLAOJBBC-MXYBEHONSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tertiary alcohols. Tertiary alcohols are compounds in which a hydroxy group, -OH, is attached to a saturated carbon atom R3COH (R not H ).

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Alcohols and polyols

Direct Parent

Tertiary alcohols

Alternative Parents

Substituents

Tertiary alcohol
Cyclic alcohol
Hydrocarbon derivative
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

tertiary alcohol (CHEBI:63196 )
sesquiterpenoid (CHEBI:63196 )
carbotricyclic compound (CHEBI:63196 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.0093 g/L	ALOGPS
logP	3.52	ALOGPS
logP	3.43	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Basic)	-0.19	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	66.5 m³·mol⁻¹	ChemAxon
Polarizability	27.44 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

This table shows at most 5 pathways. For the full list of associated pathways:

See All Associated Bacterial Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Actinobacteria	2		Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

26333017

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

56927726

PDB ID

Not Available

ChEBI ID

63196

CMMC Knowledgebase

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for (+)-caryolan-1-ol (MMDBc0002931)

MOL for #<Metabolite:0x00007fd4202026b8>

3D MOL for #<Metabolite:0x00007fd4202026b8>

3D SDF for #<Metabolite:0x00007fd4202026b8>

3D-SDF for #<Metabolite:0x00007fd4202026b8>

PDB for #<Metabolite:0x00007fd4202026b8>

3D PDB for #<Metabolite:0x00007fd4202026b8>

SMILES for #<Metabolite:0x00007fd4202026b8>

INCHI for #<Metabolite:0x00007fd4202026b8>

Structure for #<Metabolite:0x00007fd4202026b8>

3D Structure for #<Metabolite:0x00007fd4202026b8>