MiMeDB: Showing metabocard for Penidilamine (MMDBc0002950)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-14 21:07:49 UTC

Update Date

2025-10-07 16:04:39 UTC

Metabolite ID

MMDBc0002950

Metabolite Identification

Common Name

Penidilamine

Description

Penidilamine is a member of the class of organic compounds known as amines, specifically classified as a dithiolamine. This compound has garnered attention in both chemistry and biology due to its diverse biological activities and its role as a metabolite. Notably, penidilamine has been isolated from the 95% ethanol extract of Urtica thunbergiana Siebold & Zucc., alongside a new amine, 2-dimethyl-Penidilamine, and several other known compounds (PMID:38146604 ). Additionally, it has been identified as a plant growth regulator produced by the fungus Penicillium sp., highlighting its significance in fungal metabolism and potential agricultural applications (PMID:10820786 ). The isolation of penidilamine from cultures of this fungus further emphasizes its relevance in natural product chemistry and its potential utility in various biological contexts (PMID:10820786 ). Overall, penidilamine's chemical structure and its biological implications make it a compound of interest in both pharmacological research and agricultural science.

Structure

MOL SDF PDB SMILES InChI


  Mrv1533004181502422D          

 15 16  0  0  0  0            999 V2000
    2.5330    0.1698    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5330   -0.6552    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2004   -1.1401    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9455   -1.9248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4304   -2.5922    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1205   -1.9248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8655   -1.1401    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6356   -2.5922    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8151   -2.5060    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2630   -3.1191    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4906   -2.7835    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2051   -3.1960    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4044   -1.9630    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4026   -1.7915    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7381   -1.0378    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  2  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
  9 14  1  0  0  0  0
 14 15  2  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0002950

> <DATABASE_NAME>
MIME

> <SMILES>
CC1OC(=O)C(NC2=CC(C)OC2=O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C10H11NO4/c1-5-3-7(9(12)14-5)11-8-4-6(2)15-10(8)13/h3-6,11H,1-2H3

> <INCHI_KEY>
DHPUFOAMIZUXKW-UHFFFAOYSA-N

> <FORMULA>
C10H11NO4

> <MOLECULAR_WEIGHT>
209.201

> <EXACT_MASS>
209.068807838

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
26

> <JCHEM_AVERAGE_POLARIZABILITY>
20.33519498374522

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-methyl-3-[(5-methyl-2-oxo-2,5-dihydrofuran-3-yl)amino]-2,5-dihydrofuran-2-one

> <ALOGPS_LOGP>
1.07

> <JCHEM_LOGP>
0.6527433009999998

> <ALOGPS_LOGS>
-1.52

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.14993015254636

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.535078799604925

> <JCHEM_PKA_STRONGEST_BASIC>
-6.81043788756321

> <JCHEM_POLAR_SURFACE_AREA>
64.63

> <JCHEM_REFRACTIVITY>
53.43800000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.28e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-methyl-3-[(5-methyl-2-oxo-5H-furan-3-yl)amino]-5H-furan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 18-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   18-APR-15         0                                  
HETATM    1  C   UNK     0       4.728   0.317   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.728  -1.223   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       5.974  -2.128   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       5.498  -3.593   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       6.403  -4.839   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       3.958  -3.593   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.482  -2.128   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       3.053  -4.839   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       1.521  -4.678   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.491  -5.822   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.916  -5.196   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.250  -5.966   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -0.755  -3.664   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       0.751  -3.344   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       1.378  -1.937   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    7                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    8                                                  
CONECT    7    6    2                                                       
CONECT    8    6    9                                                       
CONECT    9    8   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13    9   15                                                  
CONECT   15   14                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   32    0
END

Synonyms

Value	Source
Di-3-(5-methyl-2,5-dihydro-2-oxofuryl) amine	MeSH

Molecular Formula

C₁₀H₁₁NO₄

Average Mass

209.201

Monoisotopic Mass

209.068807838

IUPAC Name

5-methyl-3-[(5-methyl-2-oxo-2,5-dihydrofuran-3-yl)amino]-2,5-dihydrofuran-2-one

Traditional Name

5-methyl-3-[(5-methyl-2-oxo-5H-furan-3-yl)amino]-5H-furan-2-one

CAS Registry Number

Not Available

SMILES

CC1OC(=O)C(NC2=CC(C)OC2=O)=C1

InChI Identifier

InChI=1S/C10H11NO4/c1-5-3-7(9(12)14-5)11-8-4-6(2)15-10(8)13/h3-6,11H,1-2H3

InChI Key

DHPUFOAMIZUXKW-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Alpha amino acids and derivatives

Alternative Parents

Substituents

Alpha-amino acid or derivatives
2-furanone
Dicarboxylic acid or derivatives
Dihydrofuran
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Carboxylic acid ester
Lactone
Secondary aliphatic amine
Oxacycle
Enamine
Organoheterocyclic compound
Secondary amine
Organic nitrogen compound
Hydrocarbon derivative
Organic oxide
Amine
Organic oxygen compound
Organonitrogen compound
Organooxygen compound
Carbonyl group
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	6.28 g/L	ALOGPS
logP	1.07	ALOGPS
logP	0.65	ChemAxon
logS	-1.5	ALOGPS
pKa (Strongest Acidic)	13.54	ChemAxon
pKa (Strongest Basic)	-6.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	64.63 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	53.44 m³·mol⁻¹	ChemAxon
Polarizability	20.34 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

This table shows at most 5 pathways. For the full list of associated pathways:

See All Associated Bacterial Pathways

Name	SMPDB/PathBank	Species

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10512593

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Penidilamine (MMDBc0002950)

MOL for #<Metabolite:0x00007fb4946adb50>

3D MOL for #<Metabolite:0x00007fb4946adb50>

3D SDF for #<Metabolite:0x00007fb4946adb50>

3D-SDF for #<Metabolite:0x00007fb4946adb50>

PDB for #<Metabolite:0x00007fb4946adb50>

3D PDB for #<Metabolite:0x00007fb4946adb50>

SMILES for #<Metabolite:0x00007fb4946adb50>

INCHI for #<Metabolite:0x00007fb4946adb50>

Structure for #<Metabolite:0x00007fb4946adb50>

3D Structure for #<Metabolite:0x00007fb4946adb50>