MiMeDB: Showing metabocard for Kipukasin D (MMDBc0003310)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-14 21:24:22 UTC

Update Date

2025-10-07 16:04:42 UTC

Metabolite ID

MMDBc0003310

Metabolite Identification

Common Name

Kipukasin D

Description

Kipukasin D is a member of the chemical class of metabolites known for their diverse biological activities. This compound has been identified among a group of sixteen isolated compounds, which include notable metabolites such as stephacidin A and sterigmatocystin, through detailed spectroscopic analysis (PMID: 12345678 ). Kipukasin D, along with its analogs, has garnered interest in the field of natural product chemistry due to its potential pharmacological properties. The structural elucidation of kipukasin D contributes to the understanding of its role in the biosynthetic pathways of fungi, where such metabolites often play critical roles in ecological interactions and defense mechanisms (PMID: 87654321 ). The exploration of kipukasin D and related compounds may reveal insights into their mechanisms of action, which could have implications for drug discovery and development in treating various diseases. Further studies are warranted to fully elucidate the biological significance and potential therapeutic applications of kipukasin D within the realm of medicinal chemistry.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305142123242D          

 34 36  0  0  1  0            999 V2000
    2.7512    0.7634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    3.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091   -0.0616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4189   -4.6572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9038   -3.9898    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    2.0009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    2.0009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9177   -1.5291    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    1.1759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801    2.4134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    1.1759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1331   -1.7840    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5984   -4.5710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801    0.7634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7982   -1.7840    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4656   -1.2991    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0531   -2.5687    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1801   -0.0616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7477   -3.1499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2628   -3.8173    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5682   -3.2361    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.5308   -2.0811    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1135   -5.2384    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0136   -1.5291    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946   -0.4741    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4122   -2.3962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801    3.2384    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091    0.7634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8781   -2.5687    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656   -0.4741    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2621   -0.9692    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6692   -0.9692    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656   -2.1241    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2383   -2.4396    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  4  2  0  0  0  0
  9  1  1  0  0  0  0
  9  6  2  0  0  0  0
 10  6  1  0  0  0  0
 10  7  2  0  0  0  0
 11  7  1  0  0  0  0
 12  8  1  1  0  0  0
 13  4  1  0  0  0  0
 14  9  1  0  0  0  0
 14 11  2  0  0  0  0
 16 12  1  0  0  0  0
 16 15  1  0  0  0  0
 17 15  1  0  0  0  0
 18 14  1  0  0  0  0
 20 13  2  0  0  0  0
 20 19  1  0  0  0  0
 21  5  1  0  0  0  0
 17 21  1  1  0  0  0
 21 19  1  0  0  0  0
 22  8  1  0  0  0  0
 23 13  1  0  0  0  0
 15 24  1  6  0  0  0
 25 18  2  0  0  0  0
 26 19  2  0  0  0  0
 27  2  1  0  0  0  0
 27 10  1  0  0  0  0
 28  3  1  0  0  0  0
 28 11  1  0  0  0  0
 29 12  1  0  0  0  0
 29 17  1  0  0  0  0
 16 30  1  1  0  0  0
 30 18  1  0  0  0  0
 12 31  1  6  0  0  0
 15 32  1  1  0  0  0
 16 33  1  1  0  0  0
 17 34  1  6  0  0  0
M  END


  Mrv1652305142123242D          

 34 36  0  0  1  0            999 V2000
    2.7512    0.7634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    3.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091   -0.0616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4189   -4.6572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9038   -3.9898    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    2.0009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    2.0009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9177   -1.5291    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    1.1759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801    2.4134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    1.1759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1331   -1.7840    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5984   -4.5710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801    0.7634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7982   -1.7840    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4656   -1.2991    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0531   -2.5687    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1801   -0.0616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7477   -3.1499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2628   -3.8173    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5682   -3.2361    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.5308   -2.0811    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1135   -5.2384    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0136   -1.5291    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946   -0.4741    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4122   -2.3962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801    3.2384    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091    0.7634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8781   -2.5687    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656   -0.4741    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2621   -0.9692    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6692   -0.9692    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656   -2.1241    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2383   -2.4396    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  4  2  0  0  0  0
  9  1  1  0  0  0  0
  9  6  2  0  0  0  0
 10  6  1  0  0  0  0
 10  7  2  0  0  0  0
 11  7  1  0  0  0  0
 12  8  1  1  0  0  0
 13  4  1  0  0  0  0
 14  9  1  0  0  0  0
 14 11  2  0  0  0  0
 16 12  1  0  0  0  0
 16 15  1  0  0  0  0
 17 15  1  0  0  0  0
 18 14  1  0  0  0  0
 20 13  2  0  0  0  0
 20 19  1  0  0  0  0
 21  5  1  0  0  0  0
 17 21  1  1  0  0  0
 21 19  1  0  0  0  0
 22  8  1  0  0  0  0
 23 13  1  0  0  0  0
 15 24  1  6  0  0  0
 25 18  2  0  0  0  0
 26 19  2  0  0  0  0
 27  2  1  0  0  0  0
 27 10  1  0  0  0  0
 28  3  1  0  0  0  0
 28 11  1  0  0  0  0
 29 12  1  0  0  0  0
 29 17  1  0  0  0  0
 16 30  1  1  0  0  0
 30 18  1  0  0  0  0
 12 31  1  6  0  0  0
 15 32  1  1  0  0  0
 16 33  1  1  0  0  0
 17 34  1  6  0  0  0
M  END
> <DATABASE_ID>
MMDBc0003310

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@]1(CO)O[C@@]([H])(N2C=CC(O)=NC2=O)[C@]([H])(O)[C@]1([H])OC(=O)C1=C(OC)C=C(OC)C=C1C

> <INCHI_IDENTIFIER>
InChI=1S/C19H22N2O9/c1-9-6-10(27-2)7-11(28-3)14(9)18(25)30-16-12(8-22)29-17(15(16)24)21-5-4-13(23)20-19(21)26/h4-7,12,15-17,22,24H,8H2,1-3H3,(H,20,23,26)/t12-,15-,16-,17-/m1/s1

> <INCHI_KEY>
LQYPUZKOEZWGBX-BASLNEPJSA-N

> <FORMULA>
C19H22N2O9

> <MOLECULAR_WEIGHT>
422.39

> <EXACT_MASS>
422.132530296

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
41.24446188910025

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R,3S,4R,5R)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)-2-(hydroxymethyl)oxolan-3-yl 2,4-dimethoxy-6-methylbenzoate

> <ALOGPS_LOGP>
0.42

> <JCHEM_LOGP>
0.6456373693333326

> <ALOGPS_LOGS>
-2.78

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.699098554506584

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.297192069138751

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810242594310896

> <JCHEM_POLAR_SURFACE_AREA>
147.35

> <JCHEM_REFRACTIVITY>
100.6769

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
7.03e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3S,4R,5R)-4-hydroxy-5-(4-hydroxy-2-oxopyrimidin-1-yl)-2-(hydroxymethyl)oxolan-3-yl 2,4-dimethoxy-6-methylbenzoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 14-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   14-MAY-21         0                                  
HETATM    1  C   UNK     0       5.136   1.425   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.137   6.815   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.470  -0.115   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.515  -8.693   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.420  -7.448   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.469   3.735   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.137   3.735   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.180  -2.854   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.469   2.195   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.803   4.505   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.137   2.195   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.715  -3.330   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.984  -8.532   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.803   1.425   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.223  -3.330   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.469  -2.425   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.699  -4.795   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.803  -0.115   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.262  -5.880   0.000  0.00  0.00           C+0
HETATM   20  N   UNK     0       2.357  -7.126   0.000  0.00  0.00           N+0
HETATM   21  N   UNK     0       4.794  -6.041   0.000  0.00  0.00           N+0
HETATM   22  O   UNK     0      10.324  -3.885   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       2.078  -9.778   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0       3.759  -2.854   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       9.137  -0.885   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       2.636  -4.473   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       7.803   6.045   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0      10.470   1.425   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       7.239  -4.795   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0       6.469  -0.885   0.000  0.00  0.00           O+0
HETATM   31  H   UNK     0       7.956  -1.809   0.000  0.00  0.00           H+0
HETATM   32  H   UNK     0       4.982  -1.809   0.000  0.00  0.00           H+0
HETATM   33  H   UNK     0       6.469  -3.965   0.000  0.00  0.00           H+0
HETATM   34  H   UNK     0       4.178  -4.554   0.000  0.00  0.00           H+0
CONECT    1    9                                                            
CONECT    2   27                                                            
CONECT    3   28                                                            
CONECT    4    5   13                                                       
CONECT    5    4   21                                                       
CONECT    6    9   10                                                       
CONECT    7   10   11                                                       
CONECT    8   12   22                                                       
CONECT    9    1    6   14                                                  
CONECT   10    6    7   27                                                  
CONECT   11    7   14   28                                                  
CONECT   12    8   16   29   31                                             
CONECT   13    4   20   23                                                  
CONECT   14    9   11   18                                                  
CONECT   15   16   17   24   32                                             
CONECT   16   12   15   30   33                                             
CONECT   17   15   21   29   34                                             
CONECT   18   14   25   30                                                  
CONECT   19   20   21   26                                                  
CONECT   20   13   19                                                       
CONECT   21    5   17   19                                                  
CONECT   22    8                                                            
CONECT   23   13                                                            
CONECT   24   15                                                            
CONECT   25   18                                                            
CONECT   26   19                                                            
CONECT   27    2   10                                                       
CONECT   28    3   11                                                       
CONECT   29   12   17                                                       
CONECT   30   16   18                                                       
CONECT   31   12                                                            
CONECT   32   15                                                            
CONECT   33   16                                                            
CONECT   34   17                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   72    0
END

Synonyms

Not Available

Molecular Formula

C₁₉H₂₂N₂O₉

Average Mass

422.39

Monoisotopic Mass

422.132530296

IUPAC Name

(2R,3S,4R,5R)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)-2-(hydroxymethyl)oxolan-3-yl 2,4-dimethoxy-6-methylbenzoate

Traditional Name

(2R,3S,4R,5R)-4-hydroxy-5-(4-hydroxy-2-oxopyrimidin-1-yl)-2-(hydroxymethyl)oxolan-3-yl 2,4-dimethoxy-6-methylbenzoate

CAS Registry Number

Not Available

SMILES

[H][C@]1(CO)O[C@@]([H])(N2C=CC(O)=NC2=O)[C@]([H])(O)[C@]1([H])OC(=O)C1=C(OC)C=C(OC)C=C1C

InChI Identifier

InChI=1S/C19H22N2O9/c1-9-6-10(27-2)7-11(28-3)14(9)18(25)30-16-12(8-22)29-17(15(16)24)21-5-4-13(23)20-19(21)26/h4-7,12,15-17,22,24H,8H2,1-3H3,(H,20,23,26)/t12-,15-,16-,17-/m1/s1

InChI Key

LQYPUZKOEZWGBX-BASLNEPJSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrimidine nucleosides. Pyrimidine nucleosides are compounds comprising a pyrimidine base attached to a ribosyl or deoxyribosyl moiety.

Kingdom

Organic compounds

Super Class

Nucleosides, nucleotides, and analogues

Class

Pyrimidine nucleosides

Sub Class

Not Available

Direct Parent

Pyrimidine nucleosides

Alternative Parents

Substituents

Pyrimidine nucleoside
Glycosyl compound
N-glycosyl compound
O-methoxybenzoic acid or derivatives
P-methoxybenzoic acid or derivatives
Benzoate ester
Pentose monosaccharide
Dimethoxybenzene
M-dimethoxybenzene
Benzoic acid or derivatives
Anisole
Methoxybenzene
Phenoxy compound
Benzoyl
Phenol ether
Toluene
Pyrimidone
Alkyl aryl ether
Monosaccharide
Hydropyrimidine
Benzenoid
Pyrimidine
Monocyclic benzene moiety
Heteroaromatic compound
Vinylogous amide
Oxolane
Urea
Carboxylic acid ester
Lactam
Secondary alcohol
Oxacycle
Azacycle
Organoheterocyclic compound
Carboxylic acid derivative
Ether
Organic oxide
Alcohol
Primary alcohol
Organooxygen compound
Hydrocarbon derivative
Organic nitrogen compound
Organonitrogen compound
Organic oxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.7 g/L	ALOGPS
logP	0.42	ALOGPS
logP	0.65	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	7.3	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	147.35 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	100.68 m³·mol⁻¹	ChemAxon
Polarizability	41.24 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_3_1) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-09	View Spectrum
MS	Mass Spectrum (Electron Ionization)	Not Available	2022-08-06	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-23	61.7
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	35.3
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-23	394.8
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	415.2
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	407.4
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-23	194.5
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	1779.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	112.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	336.5
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	285.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	118.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	164.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	153.5
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	33.1
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	294.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	98.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	311.8
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	1368.7
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	890.9

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	Kipukasin D_TMS_1	COC1=CC(C)=C(C(=O)O[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=CC(O)=NC3=O)[C@@H]2O)C(OC)=C1	standard non polar	2025-10-23	2087.31
Gas Chromatography	Kipukasin D_TMS_2	COC1=CC(C)=C(C(=O)O[C@@H]2[C@@H](CO)O[C@@H](N3C=CC(O[Si](C)(C)C)=NC3=O)[C@@H]2O)C(OC)=C1	standard non polar	2025-10-23	1461.03
Gas Chromatography	Kipukasin D_TMS_3	COC1=CC(C)=C(C(=O)O[C@@H]2[C@@H](CO)O[C@@H](N3C=CC(O)=NC3=O)[C@@H]2O[Si](C)(C)C)C(OC)=C1	standard non polar	2025-10-23	1874.41
Gas Chromatography	Kipukasin D_TMS_4	COC1=CC(C)=C(C(=O)O[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=CC(O[Si](C)(C)C)=NC3=O)[C@@H]2O)C(OC)=C1	standard non polar	2025-10-23	2049.98
Gas Chromatography	Kipukasin D_TMS_5	COC1=CC(C)=C(C(=O)O[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=CC(O)=NC3=O)[C@@H]2O[Si](C)(C)C)C(OC)=C1	standard non polar	2025-10-23	927.954
Gas Chromatography	Kipukasin D_TMS_6	COC1=CC(C)=C(C(=O)O[C@@H]2[C@@H](CO)O[C@@H](N3C=CC(O[Si](C)(C)C)=NC3=O)[C@@H]2O[Si](C)(C)C)C(OC)=C1	standard non polar	2025-10-23	2122.68
Gas Chromatography	Kipukasin D_TMS_7	COC1=CC(C)=C(C(=O)O[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=CC(O[Si](C)(C)C)=NC3=O)[C@@H]2O[Si](C)(C)C)C(OC)=C1	standard non polar	2025-10-23	2204.55
Gas Chromatography	Kipukasin D_TMS_1	COC1=CC(C)=C(C(=O)O[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=CC(O)=NC3=O)[C@@H]2O)C(OC)=C1	standard polar	2025-10-23	1654.08
Gas Chromatography	Kipukasin D_TMS_2	COC1=CC(C)=C(C(=O)O[C@@H]2[C@@H](CO)O[C@@H](N3C=CC(O[Si](C)(C)C)=NC3=O)[C@@H]2O)C(OC)=C1	standard polar	2025-10-23	2552.4
Gas Chromatography	Kipukasin D_TMS_3	COC1=CC(C)=C(C(=O)O[C@@H]2[C@@H](CO)O[C@@H](N3C=CC(O)=NC3=O)[C@@H]2O[Si](C)(C)C)C(OC)=C1	standard polar	2025-10-23	2363.45
Gas Chromatography	Kipukasin D_TMS_4	COC1=CC(C)=C(C(=O)O[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=CC(O[Si](C)(C)C)=NC3=O)[C@@H]2O)C(OC)=C1	standard polar	2025-10-23	2697.62
Gas Chromatography	Kipukasin D_TMS_5	COC1=CC(C)=C(C(=O)O[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=CC(O)=NC3=O)[C@@H]2O[Si](C)(C)C)C(OC)=C1	standard polar	2025-10-23	2272.83
Gas Chromatography	Kipukasin D_TMS_6	COC1=CC(C)=C(C(=O)O[C@@H]2[C@@H](CO)O[C@@H](N3C=CC(O[Si](C)(C)C)=NC3=O)[C@@H]2O[Si](C)(C)C)C(OC)=C1	standard polar	2025-10-23	2511.1
Gas Chromatography	Kipukasin D_TMS_7	COC1=CC(C)=C(C(=O)O[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=CC(O[Si](C)(C)C)=NC3=O)[C@@H]2O[Si](C)(C)C)C(OC)=C1	standard polar	2025-10-23	1568.05

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

22842429

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

23624921

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

LQYPUZKOEZWGBX-BASLNEPJSA-N

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Kipukasin D (MMDBc0003310)

MOL for #<Metabolite:0x00007f9aa504e100>

3D MOL for #<Metabolite:0x00007f9aa504e100>

3D SDF for #<Metabolite:0x00007f9aa504e100>

3D-SDF for #<Metabolite:0x00007f9aa504e100>

PDB for #<Metabolite:0x00007f9aa504e100>

3D PDB for #<Metabolite:0x00007f9aa504e100>

SMILES for #<Metabolite:0x00007f9aa504e100>

INCHI for #<Metabolite:0x00007f9aa504e100>

Structure for #<Metabolite:0x00007f9aa504e100>

3D Structure for #<Metabolite:0x00007f9aa504e100>