MiMeDB: Showing metabocard for Sirodesmin K (MMDBc0003334)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-14 21:25:10 UTC

Update Date

2025-10-07 16:04:43 UTC

Metabolite ID

MMDBc0003334

Metabolite Identification

Common Name

Sirodesmin K

Description

Sirodesmin K is a polyketide metabolite. There is limited literature available on this compound, and further research is needed to fully understand its properties and potential applications.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305142123252D          

 37 41  0  0  1  0            999 V2000
    7.8234   -0.0752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7267   -2.0336    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6219    1.1414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7456    1.8130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5226    0.8761    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0563    0.7357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8450   -0.8645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5286    2.5191    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0456    0.1997    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.5491   -1.9684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3767    0.2680    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9861    1.0117    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4362   -0.5440    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5181    0.1297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2421    1.2836    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8108    0.9906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6115   -0.5229    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7111    0.2339    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1589   -0.3646    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4647    1.6966    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3471    0.9048    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5444    0.4489    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8482    2.9857    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0168   -2.6481    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5184    1.6913    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8215   -0.3123    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8651    1.8245    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7728   -1.3319    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9039   -1.2236    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3659   -0.2680    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3203   -0.6761    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.6303    1.4076    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.5587   -0.2300    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.2853    0.6006    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    7.6437    0.7679    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8155   -0.3367    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0430   -1.2692    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  9  1  1  1  0  0  0
 10  2  1  0  0  0  0
 11  6  1  0  0  0  0
 16  3  1  0  0  0  0
 16  4  1  0  0  0  0
 16  9  1  0  0  0  0
 16 12  1  0  0  0  0
 17  7  1  0  0  0  0
 17 11  1  0  0  0  0
 17 13  1  0  0  0  0
 18  6  1  0  0  0  0
 18 12  1  0  0  0  0
 18 13  1  0  0  0  0
 19  7  1  0  0  0  0
 19 14  1  0  0  0  0
 20  8  1  1  0  0  0
 20 15  1  0  0  0  0
 21  5  1  0  0  0  0
 21 14  1  0  0  0  0
 21 20  1  0  0  0  0
 22 11  1  0  0  0  0
 22 15  1  0  0  0  0
 19 22  1  6  0  0  0
 23  8  1  0  0  0  0
 24 10  2  0  0  0  0
 25 12  2  0  0  0  0
 26 14  2  0  0  0  0
 27 15  2  0  0  0  0
 17 28  1  1  0  0  0
 29 10  1  0  0  0  0
 13 29  1  1  0  0  0
 30  9  1  0  0  0  0
 18 30  1  6  0  0  0
 31 19  1  0  0  0  0
 32 20  1  0  0  0  0
 33 31  1  0  0  0  0
 34 32  1  0  0  0  0
 34 33  1  0  0  0  0
  9 35  1  6  0  0  0
 11 36  1  1  0  0  0
 13 37  1  6  0  0  0
M  END


  Mrv1652305142123252D          

 37 41  0  0  1  0            999 V2000
    7.8234   -0.0752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7267   -2.0336    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6219    1.1414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7456    1.8130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5226    0.8761    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0563    0.7357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8450   -0.8645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5286    2.5191    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0456    0.1997    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.5491   -1.9684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3767    0.2680    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9861    1.0117    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4362   -0.5440    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5181    0.1297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2421    1.2836    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8108    0.9906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6115   -0.5229    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7111    0.2339    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1589   -0.3646    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4647    1.6966    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3471    0.9048    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5444    0.4489    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8482    2.9857    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0168   -2.6481    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5184    1.6913    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8215   -0.3123    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8651    1.8245    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7728   -1.3319    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9039   -1.2236    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3659   -0.2680    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3203   -0.6761    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.6303    1.4076    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.5587   -0.2300    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.2853    0.6006    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    7.6437    0.7679    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8155   -0.3367    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0430   -1.2692    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  9  1  1  1  0  0  0
 10  2  1  0  0  0  0
 11  6  1  0  0  0  0
 16  3  1  0  0  0  0
 16  4  1  0  0  0  0
 16  9  1  0  0  0  0
 16 12  1  0  0  0  0
 17  7  1  0  0  0  0
 17 11  1  0  0  0  0
 17 13  1  0  0  0  0
 18  6  1  0  0  0  0
 18 12  1  0  0  0  0
 18 13  1  0  0  0  0
 19  7  1  0  0  0  0
 19 14  1  0  0  0  0
 20  8  1  1  0  0  0
 20 15  1  0  0  0  0
 21  5  1  0  0  0  0
 21 14  1  0  0  0  0
 21 20  1  0  0  0  0
 22 11  1  0  0  0  0
 22 15  1  0  0  0  0
 19 22  1  6  0  0  0
 23  8  1  0  0  0  0
 24 10  2  0  0  0  0
 25 12  2  0  0  0  0
 26 14  2  0  0  0  0
 27 15  2  0  0  0  0
 17 28  1  1  0  0  0
 29 10  1  0  0  0  0
 13 29  1  1  0  0  0
 30  9  1  0  0  0  0
 18 30  1  6  0  0  0
 31 19  1  0  0  0  0
 32 20  1  0  0  0  0
 33 31  1  0  0  0  0
 34 32  1  0  0  0  0
 34 33  1  0  0  0  0
  9 35  1  6  0  0  0
 11 36  1  1  0  0  0
 13 37  1  6  0  0  0
M  END
> <DATABASE_ID>
MMDBc0003334

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@]1(C)O[C@]2(C[C@@]3([H])N4C(=O)[C@@]5(CO)SSSS[C@]4(C[C@@]3(O)[C@]2([H])OC(C)=O)C(=O)N5C)C(=O)C1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C20H26N2O8S4/c1-9-16(3,4)12(25)18(30-9)6-11-17(28,13(18)29-10(2)24)7-19-14(26)21(5)20(8-23,15(27)22(11)19)32-34-33-31-19/h9,11,13,23,28H,6-8H2,1-5H3/t9-,11-,13+,17+,18-,19-,20-/m1/s1

> <INCHI_KEY>
HRTWROLCNILHTD-OQIMMBKLSA-N

> <FORMULA>
C20H26N2O8S4

> <MOLECULAR_WEIGHT>
550.67

> <EXACT_MASS>
550.057200501

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
60

> <JCHEM_AVERAGE_POLARIZABILITY>
51.81340565396101

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1'R,2S,3'S,4'S,5R,7'R,10'R)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,16'-tetramethyl-3,9',15'-trioxo-11',12',13',14'-tetrathia-8',16'-diazaspiro[oxolane-2,5'-tetracyclo[8.4.2.0^{1,8}.0^{3,7}]hexadecane]-4'-yl acetate

> <ALOGPS_LOGP>
1.27

> <JCHEM_LOGP>
1.970537240333333

> <ALOGPS_LOGS>
-2.71

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.105641673960214

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.973860682038826

> <JCHEM_PKA_STRONGEST_BASIC>
-3.2058892661778335

> <JCHEM_POLAR_SURFACE_AREA>
133.68

> <JCHEM_REFRACTIVITY>
124.27679999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.08e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1'R,2S,3'S,4'S,5R,7'R,10'R)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,16'-tetramethyl-3,9',15'-trioxo-11',12',13',14'-tetrathia-8',16'-diazaspiro[oxolane-2,5'-tetracyclo[8.4.2.0^{1,8}.0^{3,7}]hexadecane]-4'-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 14-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   14-MAY-21         0                                  
HETATM    1  C   UNK     0      14.604  -0.140   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.823  -3.796   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      14.228   2.131   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      12.592   3.384   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.842   1.635   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.438   1.373   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.177  -1.614   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.720   4.702   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      13.152   0.373   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.358  -3.674   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.170   0.500   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      11.174   1.889   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.148  -1.015   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.700   0.242   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.052   2.396   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.713   1.849   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       8.608  -0.976   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.661   0.437   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.897  -0.681   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.601   3.167   0.000  0.00  0.00           C+0
HETATM   21  N   UNK     0       4.381   1.689   0.000  0.00  0.00           N+0
HETATM   22  N   UNK     0       6.616   0.838   0.000  0.00  0.00           N+0
HETATM   23  O   UNK     0       3.450   5.573   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      11.231  -4.943   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      10.301   3.157   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       3.400  -0.583   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       7.215   3.406   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0       8.909  -2.486   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      11.021  -2.284   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      11.883  -0.500   0.000  0.00  0.00           O+0
HETATM   31  S   UNK     0       4.331  -1.262   0.000  0.00  0.00           S+0
HETATM   32  S   UNK     0       3.043   2.628   0.000  0.00  0.00           S+0
HETATM   33  S   UNK     0       2.910  -0.429   0.000  0.00  0.00           S+0
HETATM   34  S   UNK     0       2.399   1.121   0.000  0.00  0.00           S+0
HETATM   35  H   UNK     0      14.268   1.433   0.000  0.00  0.00           H+0
HETATM   36  H   UNK     0       7.122  -0.628   0.000  0.00  0.00           H+0
HETATM   37  H   UNK     0       9.414  -2.369   0.000  0.00  0.00           H+0
CONECT    1    9                                                            
CONECT    2   10                                                            
CONECT    3   16                                                            
CONECT    4   16                                                            
CONECT    5   21                                                            
CONECT    6   11   18                                                       
CONECT    7   17   19                                                       
CONECT    8   20   23                                                       
CONECT    9    1   16   30   35                                             
CONECT   10    2   24   29                                                  
CONECT   11    6   17   22   36                                             
CONECT   12   16   18   25                                                  
CONECT   13   17   18   29   37                                             
CONECT   14   19   21   26                                                  
CONECT   15   20   22   27                                                  
CONECT   16    3    4    9   12                                             
CONECT   17    7   11   13   28                                             
CONECT   18    6   12   13   30                                             
CONECT   19    7   14   22   31                                             
CONECT   20    8   15   21   32                                             
CONECT   21    5   14   20                                                  
CONECT   22   11   15   19                                                  
CONECT   23    8                                                            
CONECT   24   10                                                            
CONECT   25   12                                                            
CONECT   26   14                                                            
CONECT   27   15                                                            
CONECT   28   17                                                            
CONECT   29   10   13                                                       
CONECT   30    9   18                                                       
CONECT   31   19   33                                                       
CONECT   32   20   34                                                       
CONECT   33   31   34                                                       
CONECT   34   32   33                                                       
CONECT   35    9                                                            
CONECT   36   11                                                            
CONECT   37   13                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   82    0
END

Synonyms

Not Available

Molecular Formula

C₂₀H₂₆N₂O₈S₄

Average Mass

550.67

Monoisotopic Mass

550.057200501

IUPAC Name

(1'R,2S,3'S,4'S,5R,7'R,10'R)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,16'-tetramethyl-3,9',15'-trioxo-11',12',13',14'-tetrathia-8',16'-diazaspiro[oxolane-2,5'-tetracyclo[8.4.2.0^{1,8}.0^{3,7}]hexadecane]-4'-yl acetate

Traditional Name

CAS Registry Number

Not Available

SMILES

[H][C@]1(C)O[C@]2(C[C@@]3([H])N4C(=O)[C@@]5(CO)SSSS[C@]4(C[C@@]3(O)[C@]2([H])OC(C)=O)C(=O)N5C)C(=O)C1(C)C

InChI Identifier

InChI=1S/C20H26N2O8S4/c1-9-16(3,4)12(25)18(30-9)6-11-17(28,13(18)29-10(2)24)7-19-14(26)21(5)20(8-23,15(27)22(11)19)32-34-33-31-19/h9,11,13,23,28H,6-8H2,1-5H3/t9-,11-,13+,17+,18-,19-,20-/m1/s1

InChI Key

HRTWROLCNILHTD-OQIMMBKLSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Alpha amino acids and derivatives

Alternative Parents

Substituents

Alpha-amino acid or derivatives
Thiodioxopiperazine
Dioxopiperazine
2,5-dioxopiperazine
N-methylpiperazine
N-alkylpiperazine
1,4-diazinane
3-furanone
Piperazine
Cyclic alcohol
Pyrrolidine
Tertiary alcohol
Tertiary carboxylic acid amide
Tetrahydrofuran
Carboxamide group
Carboxylic acid ester
Ketone
Lactam
Oxacycle
Organoheterocyclic compound
Azacycle
Dialkyl ether
Ether
Monocarboxylic acid or derivatives
Carbonyl group
Organic oxygen compound
Alcohol
Hydrocarbon derivative
Organopnictogen compound
Primary alcohol
Organic nitrogen compound
Organic oxide
Organonitrogen compound
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	1.08 g/L	ALOGPS
logP	1.27	ALOGPS
logP	1.97	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	12.97	ChemAxon
pKa (Strongest Basic)	-3.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	133.68 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	124.28 m³·mol⁻¹	ChemAxon
Polarizability	51.81 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-10	View Spectrum
MS	Mass Spectrum (Electron Ionization)	Not Available	2022-08-06	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-23	211.6
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (void)	2025-10-23	95.1
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-23	269.7
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	417.3
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	355.7
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-23	166.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	1768.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (void)	2025-10-23	157.7
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	427.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	215.7
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	189.9
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	139.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	111.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (void)	2025-10-23	95.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	236.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	68.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	300.0
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	1371.7
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	765.4

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	Sirodesmin K_TMS_1	CC(=O)O[C@@H]1[C@]2(C[C@H]3N4C(=O)[C@@]5(CO[Si](C)(C)C)SSSS[C@]4(C[C@@]13O)C(=O)N5C)O[C@H](C)C(C)(C)C2=O	standard non polar	2025-10-23	1474.55
Gas Chromatography	Sirodesmin K_TMS_2	CC(=O)O[C@@H]1[C@]2(C[C@H]3N4C(=O)[C@@]5(CO)SSSS[C@]4(C[C@]31O[Si](C)(C)C)C(=O)N5C)O[C@H](C)C(C)(C)C2=O	standard non polar	2025-10-23	1337.74
Gas Chromatography	Sirodesmin K_TMS_3	CC(=O)O[C@@H]1[C@]2(C[C@H]3N4C(=O)[C@@]5(CO[Si](C)(C)C)SSSS[C@]4(C[C@]31O[Si](C)(C)C)C(=O)N5C)O[C@H](C)C(C)(C)C2=O	standard non polar	2025-10-23	2187.3
Gas Chromatography	Sirodesmin K_TMS_1	CC(=O)O[C@@H]1[C@]2(C[C@H]3N4C(=O)[C@@]5(CO[Si](C)(C)C)SSSS[C@]4(C[C@@]13O)C(=O)N5C)O[C@H](C)C(C)(C)C2=O	standard polar	2025-10-23	2121.4
Gas Chromatography	Sirodesmin K_TMS_2	CC(=O)O[C@@H]1[C@]2(C[C@H]3N4C(=O)[C@@]5(CO)SSSS[C@]4(C[C@]31O[Si](C)(C)C)C(=O)N5C)O[C@H](C)C(C)(C)C2=O	standard polar	2025-10-23	2810.85
Gas Chromatography	Sirodesmin K_TMS_3	CC(=O)O[C@@H]1[C@]2(C[C@H]3N4C(=O)[C@@]5(CO[Si](C)(C)C)SSSS[C@]4(C[C@]31O[Si](C)(C)C)C(=O)N5C)O[C@H](C)C(C)(C)C2=O	standard polar	2025-10-23	1578.23

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

23330932

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14540502

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Sirodesmin K (MMDBc0003334)

MOL for #<Metabolite:0x00007f9ac43c7128>

3D MOL for #<Metabolite:0x00007f9ac43c7128>

3D SDF for #<Metabolite:0x00007f9ac43c7128>

3D-SDF for #<Metabolite:0x00007f9ac43c7128>

PDB for #<Metabolite:0x00007f9ac43c7128>

3D PDB for #<Metabolite:0x00007f9ac43c7128>

SMILES for #<Metabolite:0x00007f9ac43c7128>

INCHI for #<Metabolite:0x00007f9ac43c7128>

Structure for #<Metabolite:0x00007f9ac43c7128>

3D Structure for #<Metabolite:0x00007f9ac43c7128>