MiMeDB: Showing metabocard for (3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one (MMDBc0003898)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-14 22:08:28 UTC

Update Date

2025-10-07 16:04:47 UTC

Metabolite ID

MMDBc0003898

Metabolite Identification

Common Name

(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one

Description

(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one is a phenolic compound. There is limited literature available on this metabolite, indicating that further research may be necessary to fully understand its properties and biological significance.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152100082D          

 16 16  0  0  1  0            999 V2000
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.8875    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  1  1  6  0  0  0
  7  2  1  0  0  0  0
  8  3  1  0  0  0  0
  9  4  1  0  0  0  0
  9  6  1  0  0  0  0
 10  5  2  0  0  0  0
 10  6  1  0  0  0  0
 10  7  1  0  0  0  0
 11  5  1  0  0  0  0
 11  8  2  0  0  0  0
 12  7  2  0  0  0  0
 12  8  1  0  0  0  0
 13  9  2  0  0  0  0
 14 11  1  0  0  0  0
 15 12  1  0  0  0  0
  6 16  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0003898

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@](C)(C(C)=O)C1=CC(O)=C(C)C(O)=C1C

> <INCHI_IDENTIFIER>
InChI=1S/C12H16O3/c1-6(9(4)13)10-5-11(14)8(3)12(15)7(10)2/h5-6,14-15H,1-4H3/t6-/m1/s1

> <INCHI_KEY>
NIJXMDSDVNFHJC-ZCFIWIBFSA-N

> <FORMULA>
C12H16O3

> <MOLECULAR_WEIGHT>
208.257

> <EXACT_MASS>
208.109944375

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
31

> <JCHEM_AVERAGE_POLARIZABILITY>
22.71040613569231

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one

> <ALOGPS_LOGP>
2.06

> <JCHEM_LOGP>
2.903318041666666

> <ALOGPS_LOGS>
-2.24

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.192857340630498

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.946632271491927

> <JCHEM_PKA_STRONGEST_BASIC>
-5.604550807833189

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
59.53540000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.21e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667   6.160   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667   4.620   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       4.001   3.850   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       4.001  -0.770   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   16  H   UNK     0       1.334   5.390   0.000  0.00  0.00           H+0
CONECT    1    6                                                            
CONECT    2    7                                                            
CONECT    3    8                                                            
CONECT    4    9                                                            
CONECT    5   10   11                                                       
CONECT    6    1    9   10   16                                             
CONECT    7    2   10   12                                                  
CONECT    8    3   11   12                                                  
CONECT    9    4    6   13                                                  
CONECT   10    5    6    7                                                  
CONECT   11    5    8   14                                                  
CONECT   12    7    8   15                                                  
CONECT   13    9                                                            
CONECT   14   11                                                            
CONECT   15   12                                                            
CONECT   16    6                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

Synonyms

Not Available

Molecular Formula

C₁₂H₁₆O₃

Average Mass

208.257

Monoisotopic Mass

208.109944375

IUPAC Name

(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one

Traditional Name

(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one

CAS Registry Number

Not Available

SMILES

[H][C@@](C)(C(C)=O)C1=CC(O)=C(C)C(O)=C1C

InChI Identifier

InChI=1S/C12H16O3/c1-6(9(4)13)10-5-11(14)8(3)12(15)7(10)2/h5-6,14-15H,1-4H3/t6-/m1/s1

InChI Key

NIJXMDSDVNFHJC-ZCFIWIBFSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as aromatic monoterpenoids. These are monoterpenoids containing at least one aromatic ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Monoterpenoids

Direct Parent

Aromatic monoterpenoids

Alternative Parents

Substituents

P-cymene
Aromatic monoterpenoid
Monocyclic monoterpenoid
Phenylpropane
Xylenol
O-cresol
P-cresol
Resorcinol
Xylene
M-xylene
Phenol
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Benzenoid
Monocyclic benzene moiety
Ketone
Organic oxide
Organooxygen compound
Organic oxygen compound
Hydrocarbon derivative
Carbonyl group
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	1.21 g/L	ALOGPS
logP	2.06	ALOGPS
logP	2.9	ChemAxon
logS	-2.2	ALOGPS
pKa (Strongest Acidic)	9.95	ChemAxon
pKa (Strongest Basic)	-5.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	59.54 m³·mol⁻¹	ChemAxon
Polarizability	22.71 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (void)	2025-10-23	72.5
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (void)	2025-10-23	22.7
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-23	410.2
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	623.6
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	629.1
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (void)	2025-10-23	319.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	1707.5
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (void)	2025-10-23	64.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	334.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	366.4
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	212.8
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	173.7
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	151.4
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	46.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	304.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	138.7
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	330.5
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	1317.4
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	1021.4

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_1	CC(=O)[C@@H](C)C1=CC(O[Si](C)(C)C)=C(C)C(O)=C1C	standard non polar	2025-10-23	1838.97
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_2	CC(=O)[C@@H](C)C1=CC(O)=C(C)C(O[Si](C)(C)C)=C1C	standard non polar	2025-10-23	2021.35
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_3	CC(O[Si](C)(C)C)=C(C)C1=CC(O)=C(C)C(O)=C1C	standard non polar	2025-10-23	1875.19
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_4	C=C(O[Si](C)(C)C)[C@@H](C)C1=CC(O)=C(C)C(O)=C1C	standard non polar	2025-10-23	1995.21
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_5	CC(=O)[C@@H](C)C1=CC(O[Si](C)(C)C)=C(C)C(O[Si](C)(C)C)=C1C	standard non polar	2025-10-23	2287.81
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_6	CC(O[Si](C)(C)C)=C(C)C1=CC(O[Si](C)(C)C)=C(C)C(O)=C1C	standard non polar	2025-10-23	1886.74
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_7	C=C(O[Si](C)(C)C)[C@@H](C)C1=CC(O[Si](C)(C)C)=C(C)C(O)=C1C	standard non polar	2025-10-23	1743.55
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_8	CC(O[Si](C)(C)C)=C(C)C1=CC(O)=C(C)C(O[Si](C)(C)C)=C1C	standard non polar	2025-10-23	1864.04
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_9	C=C(O[Si](C)(C)C)[C@@H](C)C1=CC(O)=C(C)C(O[Si](C)(C)C)=C1C	standard non polar	2025-10-23	1848.97
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_10	CC(O[Si](C)(C)C)=C(C)C1=CC(O[Si](C)(C)C)=C(C)C(O[Si](C)(C)C)=C1C	standard non polar	2025-10-23	2046.78
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_11	C=C(O[Si](C)(C)C)[C@@H](C)C1=CC(O[Si](C)(C)C)=C(C)C(O[Si](C)(C)C)=C1C	standard non polar	2025-10-23	1298.84
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_1	CC(=O)[C@@H](C)C1=CC(O[Si](C)(C)C)=C(C)C(O)=C1C	standard polar	2025-10-23	1810.45
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_2	CC(=O)[C@@H](C)C1=CC(O)=C(C)C(O[Si](C)(C)C)=C1C	standard polar	2025-10-23	2269.41
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_3	CC(O[Si](C)(C)C)=C(C)C1=CC(O)=C(C)C(O)=C1C	standard polar	2025-10-23	2088.37
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_4	C=C(O[Si](C)(C)C)[C@@H](C)C1=CC(O)=C(C)C(O)=C1C	standard polar	2025-10-23	2375.91
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_5	CC(=O)[C@@H](C)C1=CC(O[Si](C)(C)C)=C(C)C(O[Si](C)(C)C)=C1C	standard polar	2025-10-23	1715.3
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_6	CC(O[Si](C)(C)C)=C(C)C1=CC(O[Si](C)(C)C)=C(C)C(O)=C1C	standard polar	2025-10-23	2204.44
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_7	C=C(O[Si](C)(C)C)[C@@H](C)C1=CC(O[Si](C)(C)C)=C(C)C(O)=C1C	standard polar	2025-10-23	1330.18
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_8	CC(O[Si](C)(C)C)=C(C)C1=CC(O)=C(C)C(O[Si](C)(C)C)=C1C	standard polar	2025-10-23	2021.96
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_9	C=C(O[Si](C)(C)C)[C@@H](C)C1=CC(O)=C(C)C(O[Si](C)(C)C)=C1C	standard polar	2025-10-23	2230.67
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_10	CC(O[Si](C)(C)C)=C(C)C1=CC(O[Si](C)(C)C)=C(C)C(O[Si](C)(C)C)=C1C	standard polar	2025-10-23	2777.58
Gas Chromatography	(3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one_TMS_11	C=C(O[Si](C)(C)C)[C@@H](C)C1=CC(O[Si](C)(C)C)=C(C)C(O[Si](C)(C)C)=C1C	standard polar	2025-10-23	2233.46

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

75200478

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

131505878

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for (3S)-3-(3,5-dihydroxy-2,4-dimethylphenyl)butan-2-one (MMDBc0003898)

MOL for #<Metabolite:0x00007f9a9f543878>

3D MOL for #<Metabolite:0x00007f9a9f543878>

3D SDF for #<Metabolite:0x00007f9a9f543878>

3D-SDF for #<Metabolite:0x00007f9a9f543878>

PDB for #<Metabolite:0x00007f9a9f543878>

3D PDB for #<Metabolite:0x00007f9a9f543878>

SMILES for #<Metabolite:0x00007f9a9f543878>

INCHI for #<Metabolite:0x00007f9a9f543878>

Structure for #<Metabolite:0x00007f9a9f543878>

3D Structure for #<Metabolite:0x00007f9a9f543878>