MiMeDB: Showing metabocard for Lorneic acid B (MMDBc0004217)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-14 22:18:10 UTC

Update Date

2025-10-07 16:04:50 UTC

Metabolite ID

MMDBc0004217

Metabolite Identification

Common Name

Lorneic acid B

Description

Lorneic acid B is a trialkyl-substituted aromatic acid, classified within the chemical class of aromatic acids. It is a metabolite derived from a marine actinomyces strain (NPS554) isolated from marine sediment at Miyazaki Harbor, Japan, at a depth of 38 m. The strain produced two notable compounds, lorneic acid A and lorneic acid B, highlighting the potential of marine microorganisms as sources of novel bioactive metabolites (PMID:19856955 ). While the specific biological activities of lorneic acid B have not been extensively characterized, compounds in this class often exhibit diverse biological properties, including antimicrobial and anti-inflammatory effects, making them of interest for further pharmacological exploration. The study of lorneic acid B and its analogs may contribute to the discovery of new therapeutic agents, emphasizing the importance of marine-derived natural products in drug development.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152100182D          

 22 22  0  0  0  0            999 V2000
    2.8579    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737    5.7750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302    4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    7.0125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026    5.7750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    4.5375    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447    4.9500    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  7  6  2  0  0  0  0
  8  5  1  0  0  0  0
  9  6  1  0  0  0  0
 11 10  2  0  0  0  0
 13  2  1  0  0  0  0
 13 10  1  0  0  0  0
 13 12  2  0  0  0  0
 14  7  1  0  0  0  0
 14 11  1  0  0  0  0
 15 12  1  0  0  0  0
 15 14  2  0  0  0  0
 16  8  1  0  0  0  0
 16 15  1  0  0  0  0
 17  9  1  0  0  0  0
 18 16  1  0  0  0  0
 19 17  2  0  0  0  0
 20 17  1  0  0  0  0
 21  6  1  0  0  0  0
 22  7  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0004217

> <DATABASE_NAME>
MIME

> <SMILES>
[H]\C(CC(O)=O)=C(\[H])C1=C(C=C(C)C=C1)C(O)CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C17H24O3/c1-3-4-5-8-16(18)15-12-13(2)10-11-14(15)7-6-9-17(19)20/h6-7,10-12,16,18H,3-5,8-9H2,1-2H3,(H,19,20)/b7-6+

> <INCHI_KEY>
UPEPIFABRQWHTB-VOTSOKGWSA-N

> <FORMULA>
C17H24O3

> <MOLECULAR_WEIGHT>
276.376

> <EXACT_MASS>
276.172544633

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
32.058776796706816

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3E)-4-[2-(1-hydroxyhexyl)-4-methylphenyl]but-3-enoic acid

> <ALOGPS_LOGP>
3.99

> <JCHEM_LOGP>
4.2397848153333335

> <ALOGPS_LOGS>
-4.16

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.444685286012987

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.48666396150737

> <JCHEM_PKA_STRONGEST_BASIC>
-3.042129909717958

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
82.2871

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.90e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3E)-4-[2-(1-hydroxyhexyl)-4-methylphenyl]but-3-enoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       5.335   6.160   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      14.670   2.310   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.668   6.930   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.002   6.160   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.336   6.930   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      16.004   9.240   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      14.670   8.470   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.669   6.160   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      16.004  10.780   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      16.004   4.620   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      16.004   6.160   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      13.337   4.620   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      14.670   3.850   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      14.670   6.930   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      13.337   6.160   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.003   6.930   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      17.338  11.550   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      12.003   8.470   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0      17.338  13.090   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      18.672  10.780   0.000  0.00  0.00           O+0
HETATM   21  H   UNK     0      17.338   8.470   0.000  0.00  0.00           H+0
HETATM   22  H   UNK     0      13.337   9.240   0.000  0.00  0.00           H+0
CONECT    1    3                                                            
CONECT    2   13                                                            
CONECT    3    1    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    8                                                       
CONECT    6    7    9   21                                                  
CONECT    7    6   14   22                                                  
CONECT    8    5   16                                                       
CONECT    9    6   17                                                       
CONECT   10   11   13                                                       
CONECT   11   10   14                                                       
CONECT   12   13   15                                                       
CONECT   13    2   10   12                                                  
CONECT   14    7   11   15                                                  
CONECT   15   12   14   16                                                  
CONECT   16    8   15   18                                                  
CONECT   17    9   19   20                                                  
CONECT   18   16                                                            
CONECT   19   17                                                            
CONECT   20   17                                                            
CONECT   21    6                                                            
CONECT   22    7                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   44    0
END

Synonyms

Value	Source
Lorneate b	Generator

Molecular Formula

C₁₇H₂₄O₃

Average Mass

276.376

Monoisotopic Mass

276.172544633

IUPAC Name

(3E)-4-[2-(1-hydroxyhexyl)-4-methylphenyl]but-3-enoic acid

Traditional Name

(3E)-4-[2-(1-hydroxyhexyl)-4-methylphenyl]but-3-enoic acid

CAS Registry Number

Not Available

SMILES

[H]\C(CC(O)=O)=C(\[H])C1=C(C=C(C)C=C1)C(O)CCCCC

InChI Identifier

InChI=1S/C17H24O3/c1-3-4-5-8-16(18)15-12-13(2)10-11-14(15)7-6-9-17(19)20/h6-7,10-12,16,18H,3-5,8-9H2,1-2H3,(H,19,20)/b7-6+

InChI Key

UPEPIFABRQWHTB-VOTSOKGWSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohols

Direct Parent

Fatty alcohols

Alternative Parents

Substituents

Fatty alcohol
Styrene
Toluene
Monocyclic benzene moiety
Benzenoid
Secondary alcohol
Carboxylic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Alcohol
Organooxygen compound
Aromatic alcohol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.019 g/L	ALOGPS
logP	3.99	ALOGPS
logP	4.24	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Acidic)	4.49	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	82.29 m³·mol⁻¹	ChemAxon
Polarizability	32.06 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-23	465.0
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	29.2
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-23	544.4
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	697.7
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	752.5
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-23	401.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	2612.1
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	83.4
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	398.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	571.4
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	340.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	218.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	190.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	8.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	352.9
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	389.9
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	420.9
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	1645.1
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	1514.0

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	Lorneic acid B_TMS_1	CCCCCC(O)C1=CC(C)=CC=C1/C=C/CC(=O)O[Si](C)(C)C	standard non polar	2025-10-23	1935.29
Gas Chromatography	Lorneic acid B_TMS_2	CCCCCC(O[Si](C)(C)C)C1=CC(C)=CC=C1/C=C/CC(=O)O	standard non polar	2025-10-23	1601.43
Gas Chromatography	Lorneic acid B_TMS_3	CCCCCC(O[Si](C)(C)C)C1=CC(C)=CC=C1/C=C/CC(=O)O[Si](C)(C)C	standard non polar	2025-10-23	1912.34
Gas Chromatography	Lorneic acid B_TMS_1	CCCCCC(O)C1=CC(C)=CC=C1/C=C/CC(=O)O[Si](C)(C)C	standard polar	2025-10-23	2240.04
Gas Chromatography	Lorneic acid B_TMS_2	CCCCCC(O[Si](C)(C)C)C1=CC(C)=CC=C1/C=C/CC(=O)O	standard polar	2025-10-23	1629.32
Gas Chromatography	Lorneic acid B_TMS_3	CCCCCC(O[Si](C)(C)C)C1=CC(C)=CC=C1/C=C/CC(=O)O[Si](C)(C)C	standard polar	2025-10-23	1570.01

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Actinobacteria	1	Human ; Human feces; Human saliva; Human urine; Human supragingival plaque; Human sputum; Human subgingival plaque	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

24659837

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44605342

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Lorneic acid B (MMDBc0004217)

MOL for #<Metabolite:0x00007f9ac412ae88>

3D MOL for #<Metabolite:0x00007f9ac412ae88>

3D SDF for #<Metabolite:0x00007f9ac412ae88>

3D-SDF for #<Metabolite:0x00007f9ac412ae88>

PDB for #<Metabolite:0x00007f9ac412ae88>

3D PDB for #<Metabolite:0x00007f9ac412ae88>

SMILES for #<Metabolite:0x00007f9ac412ae88>

INCHI for #<Metabolite:0x00007f9ac412ae88>

Structure for #<Metabolite:0x00007f9ac412ae88>

3D Structure for #<Metabolite:0x00007f9ac412ae88>