Showing metabocard for 3,5-Dimethylcatechol (MMDBc0005249)

Record Information
Version1.0
StatusDetected and Quantified
Creation Date2021-05-14 22:55:04 UTC
Update Date2025-10-07 16:04:59 UTC
Metabolite IDMMDBc0005249
Metabolite Identification
Common Name3,5-Dimethylcatechol
Description3,5-Dimethylcatechol is a polyphenolic compound classified as a catechol derivative, recognized as a metabolite in various biochemical pathways. This compound plays a significant role in microbial degradation processes, as evidenced by studies demonstrating its involvement in the degradation of chlorinated phenolic compounds. For instance, strain DMU114 utilizes a three-step pathway to degrade PCMX, where 3,5-dimethylcatechol is an intermediate product formed through ortho-hydroxylation (PMID:40824071 ). Additionally, it serves as a precursor in synthetic organic chemistry, with total syntheses of ent-penicillones A and B achieved from 3,5-dimethylcatechol in nine to ten steps (PMID:27723310 ). However, its biological activity is limited, as catechol-2,3-dioxygenase fails to cleave 3,5-dimethylcatechol, unlike its efficient cleavage of 3,4-dimethylcatechol, highlighting structural specificity in enzyme-substrate interactions (PMID:16734718 ). Furthermore, phenol hydroxylase can convert various dimethylphenols into 3,5-dimethylcatechol, although this compound remains resistant to further enzymatic cleavage (PMID:11425758 ). Thus, 3,5-dimethylcatechol is a significant compound in both microbial metabolism and synthetic chemistry, with implications for understanding enzymatic specificity and metabolic pathways.
Structure
MOLSDFPDBSMILESInChI

MOL for #<Metabolite:0x00007fb4b884e760>


  Mrv1652305152100552D          

 10 10  0  0  0  0            999 V2000
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  5  1  1  0  0  0  0
  5  3  2  0  0  0  0
  5  4  1  0  0  0  0
  6  2  1  0  0  0  0
  6  3  1  0  0  0  0
  7  4  2  0  0  0  0
  8  6  2  0  0  0  0
  8  7  1  0  0  0  0
  9  7  1  0  0  0  0
 10  8  1  0  0  0  0
M  END
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3D MOL for #<Metabolite:0x00007fb4b884e760>

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3D SDF for #<Metabolite:0x00007fb4b884e760>

  Mrv1652305152100552D          

 10 10  0  0  0  0            999 V2000
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  5  1  1  0  0  0  0
  5  3  2  0  0  0  0
  5  4  1  0  0  0  0
  6  2  1  0  0  0  0
  6  3  1  0  0  0  0
  7  4  2  0  0  0  0
  8  6  2  0  0  0  0
  8  7  1  0  0  0  0
  9  7  1  0  0  0  0
 10  8  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0005249

> <DATABASE_NAME>
MIME

> <SMILES>
CC1=CC(C)=C(O)C(O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C8H10O2/c1-5-3-6(2)8(10)7(9)4-5/h3-4,9-10H,1-2H3

> <INCHI_KEY>
YGLVLWAMIJMBPF-UHFFFAOYSA-N

> <FORMULA>
C8H10O2

> <MOLECULAR_WEIGHT>
138.166

> <EXACT_MASS>
138.068079562

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
20

> <JCHEM_AVERAGE_POLARIZABILITY>
14.884620035333805

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3,5-dimethylbenzene-1,2-diol

> <ALOGPS_LOGP>
1.34

> <JCHEM_LOGP>
2.3929579513333334

> <ALOGPS_LOGS>
-0.71

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.291663319318904

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.77081367093263

> <JCHEM_PKA_STRONGEST_BASIC>
-6.2265196641728275

> <JCHEM_POLAR_SURFACE_AREA>
40.46

> <JCHEM_REFRACTIVITY>
40.1022

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.67e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3,5-dimethylbenzene-1,2-diol

> <JCHEM_VEBER_RULE>
0

$$$$

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3D-SDF for #<Metabolite:0x00007fb4b884e760>
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PDB for #<Metabolite:0x00007fb4b884e760>
HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
CONECT    1    5                                                            
CONECT    2    6                                                            
CONECT    3    5    6                                                       
CONECT    4    5    7                                                       
CONECT    5    1    3    4                                                  
CONECT    6    2    3    8                                                  
CONECT    7    4    8    9                                                  
CONECT    8    6    7   10                                                  
CONECT    9    7                                                            
CONECT   10    8                                                            
MASTER        0    0    0    0    0    0    0    0   10    0   20    0
END

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3D PDB for #<Metabolite:0x00007fb4b884e760>
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SMILES for #<Metabolite:0x00007fb4b884e760>
CC1=CC(C)=C(O)C(O)=C1
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INCHI for #<Metabolite:0x00007fb4b884e760>
InChI=1S/C8H10O2/c1-5-3-6(2)8(10)7(9)4-5/h3-4,9-10H,1-2H3
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SynonymsNot Available
Molecular FormulaC8H10O2
Average Mass138.166
Monoisotopic Mass138.068079562
IUPAC Name3,5-dimethylbenzene-1,2-diol
Traditional Name3,5-dimethylbenzene-1,2-diol
CAS Registry NumberNot Available
SMILES
CC1=CC(C)=C(O)C(O)=C1
InChI Identifier
InChI=1S/C8H10O2/c1-5-3-6(2)8(10)7(9)4-5/h3-4,9-10H,1-2H3
InChI KeyYGLVLWAMIJMBPF-UHFFFAOYSA-N