MiMeDB: Showing metabocard for Shikometabolin A (MMDBc0005454)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-14 23:03:27 UTC

Update Date

2025-10-07 16:05:01 UTC

Metabolite ID

MMDBc0005454

Metabolite Identification

Common Name

Shikometabolin A

Description

Shikometabolin A is a dimeric naphthoquinone derivative, a class of compounds known for their diverse biological activities and potential therapeutic applications. This metabolite was identified from the crude methanol extract of the roots of Lithospermum erythrorhizon, a plant recognized for its medicinal properties. The extraction process involved successive chromatographic fractionation, which successfully isolated shikometabolin A alongside two new derivatives, shikometabolin E and shikometabolin F (PMID:25190151 ). The presence of shikometabolin A in this context highlights its significance within the broader spectrum of naphthoquinone compounds, which are often studied for their roles in various biological processes, including antimicrobial and anticancer activities. Further research into shikometabolin A may elucidate its specific mechanisms of action and potential applications in pharmacology.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152101032D          

 42 46  0  0  1  0            999 V2000
    5.4364   -2.3646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0074   -2.3646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2693    5.6716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0897    5.2301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7219   -1.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0278    4.2739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0074   -0.7146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5798    3.6608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3929    1.4785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1379    2.2631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6220    1.4785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7219   -1.9521    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2827    5.0585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0074    0.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8769    2.2631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3249    2.8762    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.8408    0.8654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3310    2.4346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1740    0.8654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6749    0.5953    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3400    0.5953    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0339    1.0369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7789    1.8215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9810    1.0369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4199    1.3800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5949    1.3800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2359    1.8215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6839    2.4346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4818    0.4238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5330    0.4238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9720    1.9931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0429    1.9931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4821    2.7047    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0958    0.0808    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0760    3.2192    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9191    0.0808    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9388    3.2192    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7368   -0.3608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2781   -0.3608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7170    2.7777    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2978    2.7777    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1318    3.0477    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  7  5  1  0  0  0  0
  8  6  1  0  0  0  0
 10  9  2  0  0  0  0
 12  1  1  0  0  0  0
 12  2  1  0  0  0  0
 12  5  2  0  0  0  0
 13  3  1  0  0  0  0
 13  4  1  0  0  0  0
 13  6  2  0  0  0  0
 14  7  1  0  0  0  0
 15 11  2  0  0  0  0
 16  8  1  0  0  0  0
 16 15  1  0  0  0  0
 17  9  1  0  0  0  0
 18 10  1  0  0  0  0
 19 11  1  0  0  0  0
 20 14  1  0  0  0  0
 21 14  2  0  0  0  0
 22 17  2  0  0  0  0
 23 18  1  0  0  0  0
 23 22  1  0  0  0  0
 24 19  1  0  0  0  0
 25 20  1  0  0  0  0
 26 21  1  0  0  0  0
 26 25  2  0  0  0  0
 27 24  1  0  0  0  0
 28 15  1  0  0  0  0
 28 27  1  0  0  0  0
 29 20  2  0  0  0  0
 29 22  1  0  0  0  0
 30 21  1  0  0  0  0
 30 24  2  0  0  0  0
 31 23  2  0  0  0  0
 31 25  1  0  0  0  0
 32 26  1  0  0  0  0
 32 27  2  0  0  0  0
 16 33  1  1  0  0  0
 34 17  1  0  0  0  0
 35 18  2  0  0  0  0
 36 19  2  0  0  0  0
 37 28  2  0  0  0  0
 38 29  1  0  0  0  0
 39 30  1  0  0  0  0
 40 31  1  0  0  0  0
 41 32  1  0  0  0  0
 16 42  1  1  0  0  0
M  END


  Mrv1652305152101032D          

 42 46  0  0  1  0            999 V2000
    5.4364   -2.3646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0074   -2.3646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2693    5.6716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0897    5.2301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7219   -1.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0278    4.2739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0074   -0.7146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5798    3.6608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3929    1.4785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1379    2.2631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6220    1.4785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7219   -1.9521    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2827    5.0585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0074    0.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8769    2.2631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3249    2.8762    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.8408    0.8654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3310    2.4346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1740    0.8654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6749    0.5953    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3400    0.5953    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0339    1.0369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7789    1.8215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9810    1.0369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4199    1.3800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5949    1.3800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2359    1.8215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6839    2.4346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4818    0.4238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5330    0.4238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9720    1.9931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0429    1.9931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4821    2.7047    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0958    0.0808    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0760    3.2192    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9191    0.0808    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9388    3.2192    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7368   -0.3608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2781   -0.3608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7170    2.7777    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2978    2.7777    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1318    3.0477    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  7  5  1  0  0  0  0
  8  6  1  0  0  0  0
 10  9  2  0  0  0  0
 12  1  1  0  0  0  0
 12  2  1  0  0  0  0
 12  5  2  0  0  0  0
 13  3  1  0  0  0  0
 13  4  1  0  0  0  0
 13  6  2  0  0  0  0
 14  7  1  0  0  0  0
 15 11  2  0  0  0  0
 16  8  1  0  0  0  0
 16 15  1  0  0  0  0
 17  9  1  0  0  0  0
 18 10  1  0  0  0  0
 19 11  1  0  0  0  0
 20 14  1  0  0  0  0
 21 14  2  0  0  0  0
 22 17  2  0  0  0  0
 23 18  1  0  0  0  0
 23 22  1  0  0  0  0
 24 19  1  0  0  0  0
 25 20  1  0  0  0  0
 26 21  1  0  0  0  0
 26 25  2  0  0  0  0
 27 24  1  0  0  0  0
 28 15  1  0  0  0  0
 28 27  1  0  0  0  0
 29 20  2  0  0  0  0
 29 22  1  0  0  0  0
 30 21  1  0  0  0  0
 30 24  2  0  0  0  0
 31 23  2  0  0  0  0
 31 25  1  0  0  0  0
 32 26  1  0  0  0  0
 32 27  2  0  0  0  0
 16 33  1  1  0  0  0
 34 17  1  0  0  0  0
 35 18  2  0  0  0  0
 36 19  2  0  0  0  0
 37 28  2  0  0  0  0
 38 29  1  0  0  0  0
 39 30  1  0  0  0  0
 40 31  1  0  0  0  0
 41 32  1  0  0  0  0
 16 42  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0005454

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@](O)(CC=C(C)C)C1=CC(=O)C2=C(O)C3=C(CC=C(C)C)C4=C(O)C5=C(O)C=CC(=O)C5=C(O)C4=C3C(O)=C2C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C32H28O9/c1-12(2)5-7-14-20-25(31(40)23-18(35)10-9-17(34)22(23)29(20)38)26-21(14)30(39)24-19(36)11-15(16(33)8-6-13(3)4)28(37)27(24)32(26)41/h5-6,9-11,16,33-34,38-41H,7-8H2,1-4H3/t16-/m1/s1

> <INCHI_KEY>
GZLGDGNAPRORBA-MRXNPFEDSA-N

> <FORMULA>
C32H28O9

> <MOLECULAR_WEIGHT>
556.567

> <EXACT_MASS>
556.173332482

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
69

> <JCHEM_AVERAGE_POLARIZABILITY>
59.8331241331759

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3,10,14,16,21-pentahydroxy-6-[(1R)-1-hydroxy-4-methylpent-3-en-1-yl]-12-(3-methylbut-2-en-1-yl)pentacyclo[11.8.0.0^{2,11}.0^{4,9}.0^{15,20}]henicosa-1,3,6,9,11,13,15,17,20-nonaene-5,8,19-trione

> <ALOGPS_LOGP>
1.57

> <JCHEM_LOGP>
0.6201957366666665

> <ALOGPS_LOGS>
-4.56

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.406305624188493

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.188383843721243

> <JCHEM_PKA_STRONGEST_BASIC>
-3.105919638729695

> <JCHEM_POLAR_SURFACE_AREA>
172.58999999999997

> <JCHEM_REFRACTIVITY>
161.53960000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.55e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3,10,14,16,21-pentahydroxy-6-[(1R)-1-hydroxy-4-methylpent-3-en-1-yl]-12-(3-methylbut-2-en-1-yl)pentacyclo[11.8.0.0^{2,11}.0^{4,9}.0^{15,20}]henicosa-1,3,6,9,11,13,15,17,20-nonaene-5,8,19-trione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0      10.148  -4.414   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.481  -4.414   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.503  10.587   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.034   9.763   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.814  -2.104   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.052   7.978   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.481  -1.334   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.082   6.834   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      13.800   2.760   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      13.324   4.224   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.161   2.760   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.814  -3.644   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.528   9.443   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.481   0.206   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.637   4.224   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.606   5.369   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      12.770   1.615   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      11.818   4.545   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.191   1.615   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.726   1.111   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.235   1.111   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      11.263   1.936   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      10.787   3.400   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       3.698   1.936   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.251   2.576   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.711   2.576   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.174   3.400   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       3.143   4.545   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      10.233   0.791   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.728   0.791   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       9.281   3.720   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       5.680   3.720   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      -0.900   5.049   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0      13.245   0.151   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0      11.342   6.009   0.000  0.00  0.00           O+0
HETATM   36  O   UNK     0       1.716   0.151   0.000  0.00  0.00           O+0
HETATM   37  O   UNK     0       3.619   6.009   0.000  0.00  0.00           O+0
HETATM   38  O   UNK     0      10.709  -0.674   0.000  0.00  0.00           O+0
HETATM   39  O   UNK     0       4.252  -0.674   0.000  0.00  0.00           O+0
HETATM   40  O   UNK     0       8.805   5.185   0.000  0.00  0.00           O+0
HETATM   41  O   UNK     0       6.156   5.185   0.000  0.00  0.00           O+0
HETATM   42  H   UNK     0       2.113   5.689   0.000  0.00  0.00           H+0
CONECT    1   12                                                            
CONECT    2   12                                                            
CONECT    3   13                                                            
CONECT    4   13                                                            
CONECT    5    7   12                                                       
CONECT    6    8   13                                                       
CONECT    7    5   14                                                       
CONECT    8    6   16                                                       
CONECT    9   10   17                                                       
CONECT   10    9   18                                                       
CONECT   11   15   19                                                       
CONECT   12    1    2    5                                                  
CONECT   13    3    4    6                                                  
CONECT   14    7   20   21                                                  
CONECT   15   11   16   28                                                  
CONECT   16    8   15   33   42                                             
CONECT   17    9   22   34                                                  
CONECT   18   10   23   35                                                  
CONECT   19   11   24   36                                                  
CONECT   20   14   25   29                                                  
CONECT   21   14   26   30                                                  
CONECT   22   17   23   29                                                  
CONECT   23   18   22   31                                                  
CONECT   24   19   27   30                                                  
CONECT   25   20   26   31                                                  
CONECT   26   21   25   32                                                  
CONECT   27   24   28   32                                                  
CONECT   28   15   27   37                                                  
CONECT   29   20   22   38                                                  
CONECT   30   21   24   39                                                  
CONECT   31   23   25   40                                                  
CONECT   32   26   27   41                                                  
CONECT   33   16                                                            
CONECT   34   17                                                            
CONECT   35   18                                                            
CONECT   36   19                                                            
CONECT   37   28                                                            
CONECT   38   29                                                            
CONECT   39   30                                                            
CONECT   40   31                                                            
CONECT   41   32                                                            
CONECT   42   16                                                            
MASTER        0    0    0    0    0    0    0    0   42    0   92    0
END

Synonyms

Not Available

Molecular Formula

C₃₂H₂₈O₉

Average Mass

556.567

Monoisotopic Mass

556.173332482

IUPAC Name

3,10,14,16,21-pentahydroxy-6-[(1R)-1-hydroxy-4-methylpent-3-en-1-yl]-12-(3-methylbut-2-en-1-yl)pentacyclo[11.8.0.0^{2,11}.0^{4,9}.0^{15,20}]henicosa-1,3,6,9,11,13,15,17,20-nonaene-5,8,19-trione

Traditional Name

3,10,14,16,21-pentahydroxy-6-[(1R)-1-hydroxy-4-methylpent-3-en-1-yl]-12-(3-methylbut-2-en-1-yl)pentacyclo[11.8.0.0^{2,11}.0^{4,9}.0^{15,20}]henicosa-1,3,6,9,11,13,15,17,20-nonaene-5,8,19-trione

CAS Registry Number

Not Available

SMILES

[H][C@@](O)(CC=C(C)C)C1=CC(=O)C2=C(O)C3=C(CC=C(C)C)C4=C(O)C5=C(O)C=CC(=O)C5=C(O)C4=C3C(O)=C2C1=O

InChI Identifier

InChI=1S/C32H28O9/c1-12(2)5-7-14-20-25(31(40)23-18(35)10-9-17(34)22(23)29(20)38)26-21(14)30(39)24-19(36)11-15(16(33)8-6-13(3)4)28(37)27(24)32(26)41/h5-6,9-11,16,33-34,38-41H,7-8H2,1-4H3/t16-/m1/s1

InChI Key

GZLGDGNAPRORBA-MRXNPFEDSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as naphthols and derivatives. These are naphthalene derivatives carrying one or more hydroxyl (-OH) groups at any ring position.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Naphthalenes

Sub Class

Naphthols and derivatives

Direct Parent

Naphthols and derivatives

Alternative Parents

Substituents

1-naphthol
Hydroquinone
1-hydroxy-2-unsubstituted benzenoid
Vinylogous acid
Secondary alcohol
Polyol
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Aromatic alcohol
Organooxygen compound
Alcohol
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.016 g/L	ALOGPS
logP	1.57	ALOGPS
logP	0.62	ChemAxon
logS	-4.6	ALOGPS
pKa (Strongest Acidic)	7.19	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	172.59 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	161.54 m³·mol⁻¹	ChemAxon
Polarizability	59.83 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_4_4) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-09	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-23	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

This table shows at most 5 pathways. For the full list of associated pathways:

See All Associated Bacterial Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Bacteroidetes	1	Human feces; Human ; Human urine	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78436803

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

CMMC Knowledgebase

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Shikometabolin A (MMDBc0005454)

MOL for #<Metabolite:0x00007fd434289320>

3D MOL for #<Metabolite:0x00007fd434289320>

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3D-SDF for #<Metabolite:0x00007fd434289320>

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3D PDB for #<Metabolite:0x00007fd434289320>

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Structure for #<Metabolite:0x00007fd434289320>

3D Structure for #<Metabolite:0x00007fd434289320>