MiMeDB: Showing metabocard for Pneumocandin A3 (MMDBc0006475)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-14 23:40:01 UTC

Update Date

2025-10-07 16:05:10 UTC

Metabolite ID

MMDBc0006475

Metabolite Identification

Common Name

Pneumocandin A3

Description

Pneumocandin A3 is a lipopeptide antibiotic belonging to the echinocandin class. There is limited literature available on this metabolite, indicating that further research may be necessary to fully understand its properties and potential applications.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152101402D          

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M  END


  Mrv1652305152101402D          

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    0.8644   -6.9491    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4237   -0.4281    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9472   -7.4137    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5112   -1.7718    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6534   -1.7718    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5084   -8.2030    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7078   -0.9425    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7487    0.0530    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2058   -3.0093    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8255   -4.1259    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2096   -2.5566    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0894   -7.0107    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0798   -4.6904    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5987   -2.0597    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9826   -5.5858    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3156   -5.8370    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5173   -7.2281    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  1  1  0  0  0  0
  8  7  1  0  0  0  0
  9  7  1  0  0  0  0
 10  8  1  0  0  0  0
 11  9  1  0  0  0  0
 12 10  1  0  0  0  0
 13 11  1  0  0  0  0
 14 12  1  0  0  0  0
 18 15  1  0  0  0  0
 19 16  2  0  0  0  0
 20 17  1  0  0  0  0
 22 21  1  0  0  0  0
 28  2  1  6  0  0  0
 28  6  1  0  0  0  0
 28 23  1  0  0  0  0
 29  3  1  6  0  0  0
 29 13  1  0  0  0  0
 29 23  1  0  0  0  0
 30  4  1  6  0  0  0
 30 26  1  0  0  0  0
 31  5  1  0  0  0  0
 32 15  2  0  0  0  0
 32 16  1  0  0  0  0
 32 17  1  0  0  0  0
 33 18  2  0  0  0  0
 33 19  1  0  0  0  0
 34 24  1  0  0  0  0
 34 27  1  0  0  0  0
 35 21  1  0  0  0  0
 36 20  1  6  0  0  0
 37 24  1  0  0  0  0
 38 25  1  0  0  0  0
 39 25  1  0  0  0  0
 40 14  1  0  0  0  0
 41 22  1  0  0  0  0
 42 31  1  6  0  0  0
 43 38  1  6  0  0  0
 45 30  1  0  0  0  0
 45 44  1  0  0  0  0
 46 35  1  0  0  0  0
 47 36  1  0  0  0  0
 48 37  1  0  0  0  0
 49 44  1  0  0  0  0
 50 42  1  0  0  0  0
 51 43  1  0  0  0  0
 52 39  2  0  0  0  0
 35 53  1  6  0  0  0
 53 40  2  0  0  0  0
 54 36  1  0  0  0  0
 54 48  2  0  0  0  0
 55 41  1  0  0  0  0
 55 49  2  0  0  0  0
 56 42  1  0  0  0  0
 56 46  2  0  0  0  0
 57 43  1  0  0  0  0
 57 47  2  0  0  0  0
 58 27  1  0  0  0  0
 58 37  1  0  0  0  0
 58 50  1  0  0  0  0
 59 26  1  0  0  0  0
 59 44  1  0  0  0  0
 59 51  1  0  0  0  0
 31 60  1  6  0  0  0
 61 33  1  0  0  0  0
 34 62  1  6  0  0  0
 38 63  1  1  0  0  0
 64 39  1  0  0  0  0
 40 65  1  4  0  0  0
 41 66  1  1  0  0  0
 45 67  1  1  0  0  0
 46 68  1  4  0  0  0
 47 69  1  4  0  0  0
 48 70  1  4  0  0  0
 49 71  1  4  0  0  0
 72 50  2  0  0  0  0
 73 51  2  0  0  0  0
 28 74  1  1  0  0  0
 29 75  1  1  0  0  0
 30 76  1  1  0  0  0
 31 77  1  6  0  0  0
 34 78  1  1  0  0  0
 35 79  1  6  0  0  0
 36 80  1  6  0  0  0
 37 81  1  6  0  0  0
 38 82  1  1  0  0  0
 41 83  1  1  0  0  0
 42 84  1  6  0  0  0
 43 85  1  6  0  0  0
 44 86  1  6  0  0  0
 45 87  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0006475

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@](C)(CC)C[C@]([H])(C)CCCCCCCCC(O)=N[C@]1([H])CC[C@@]([H])(O)N=C(O)[C@@]2([H])N(C[C@]([H])(C)[C@]2([H])O)C(=O)[C@@]([H])(N=C(O)[C@]([H])(CCC2=CC=C(O)C=C2)N=C(O)[C@]2([H])C[C@@]([H])(O)CN2C(=O)[C@@]([H])(N=C1O)[C@@]([H])(C)O)[C@]([H])(O)CC(O)=N

> <INCHI_IDENTIFIER>
InChI=1S/C51H82N8O14/c1-6-28(2)23-29(3)13-11-9-7-8-10-12-14-40(65)53-35-21-22-41(66)55-49(71)44-45(67)30(4)26-59(44)51(73)43(38(63)25-39(52)64)57-47(69)36(20-17-32-15-18-33(61)19-16-32)54-48(70)37-24-34(62)27-58(37)50(72)42(31(5)60)56-46(35)68/h15-16,18-19,28-31,34-38,41-45,60-63,66-67H,6-14,17,20-27H2,1-5H3,(H2,52,64)(H,53,65)(H,54,70)(H,55,71)(H,56,68)(H,57,69)/t28-,29+,30-,31+,34+,35+,36-,37-,38+,41+,42-,43-,44-,45-/m0/s1

> <INCHI_KEY>
PVPPXJJCHCIYGN-FMLPGXNNSA-N

> <FORMULA>
C51H82N8O14

> <MOLECULAR_WEIGHT>
1031.259

> <EXACT_MASS>
1030.595049352

> <JCHEM_ACCEPTOR_COUNT>
20

> <JCHEM_ATOM_COUNT>
155

> <JCHEM_AVERAGE_POLARIZABILITY>
111.36437811644187

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
13

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(10R,12S)-N-[(3S,6S,9S,11R,15S,18R,21R,24S,25S,26S)-5,8,11,17,21,23,25-heptahydroxy-3-[(1R)-1-hydroxy-2-(C-hydroxycarbonimidoyl)ethyl]-15-[(1R)-1-hydroxyethyl]-6-[2-(4-hydroxyphenyl)ethyl]-26-methyl-2,14-dioxo-1,4,7,13,16,22-hexaazatricyclo[22.3.0.0^{9,13}]heptacosa-4,7,16,22-tetraen-18-yl]-10,12-dimethyltetradecanimidic acid

> <ALOGPS_LOGP>
2.36

> <JCHEM_LOGP>
1.6788878147442783

> <ALOGPS_LOGS>
-4.30

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
3.110069802092394

> <JCHEM_PKA_STRONGEST_ACIDIC>
-1.1061029660152482

> <JCHEM_PKA_STRONGEST_BASIC>
12.614541849553529

> <JCHEM_POLAR_SURFACE_AREA>
369.03

> <JCHEM_REFRACTIVITY>
278.37379999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
20

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.12e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(10R,12S)-N-[(3S,6S,9S,11R,15S,18R,21R,24S,25S,26S)-5,8,11,17,21,23,25-heptahydroxy-3-[(1R)-1-hydroxy-2-(C-hydroxycarbonimidoyl)ethyl]-15-[(1R)-1-hydroxyethyl]-6-[2-(4-hydroxyphenyl)ethyl]-26-methyl-2,14-dioxo-1,4,7,13,16,22-hexaazatricyclo[22.3.0.0^{9,13}]heptacosa-4,7,16,22-tetraen-18-yl]-10,12-dimethyltetradecanimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0     -19.088  -4.077   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -16.421  -2.537   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -13.753  -2.537   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.047 -16.348   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.958  -0.237   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -17.754  -4.847   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -8.419  -4.077   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -7.085  -4.847   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -9.752  -4.847   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -5.751  -4.077   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0     -11.086  -4.077   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -4.418  -4.847   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -12.420  -4.847   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.084  -4.077   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      14.951 -10.822   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      15.150  -8.162   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      12.747  -9.319   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      16.487 -10.937   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      16.686  -8.277   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      12.079  -7.932   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.355  -6.281   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.239  -7.817   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0     -15.087  -4.847   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      10.124  -2.701   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.501 -14.359   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.644 -14.116   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       8.065  -1.298   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0     -16.421  -4.077   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -13.753  -4.077   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.277 -14.826   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       4.392  -0.799   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      14.283  -9.434   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      17.354  -9.665   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       9.604  -1.252   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       0.917  -4.847   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      10.543  -7.817   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       8.905  -3.643   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       9.169 -12.972   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       9.368 -15.632   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      -1.750  -4.847   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       0.582  -9.318   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       4.621  -2.322   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       8.302 -11.699   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       3.869 -12.367   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       3.180 -13.745   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0       1.877  -3.643   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      10.201  -9.318   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0       9.866  -4.847   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0       2.481 -11.699   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0       6.161  -2.322   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0       6.914 -12.367   0.000  0.00  0.00           C+0
HETATM   52  N   UNK     0      10.904 -15.516   0.000  0.00  0.00           N+0
HETATM   53  N   UNK     0      -0.416  -4.077   0.000  0.00  0.00           N+0
HETATM   54  N   UNK     0      10.428  -6.281   0.000  0.00  0.00           N+0
HETATM   55  N   UNK     0       1.352 -10.652   0.000  0.00  0.00           N+0
HETATM   56  N   UNK     0       3.150  -2.776   0.000  0.00  0.00           N+0
HETATM   57  N   UNK     0       9.431 -10.652   0.000  0.00  0.00           N+0
HETATM   58  N   UNK     0       7.633  -2.776   0.000  0.00  0.00           N+0
HETATM   59  N   UNK     0       5.391 -12.597   0.000  0.00  0.00           N+0
HETATM   60  O   UNK     0       5.596   0.161   0.000  0.00  0.00           O+0
HETATM   61  O   UNK     0      18.890  -9.780   0.000  0.00  0.00           O+0
HETATM   62  O   UNK     0      10.472   0.021   0.000  0.00  0.00           O+0
HETATM   63  O   UNK     0      10.705 -12.857   0.000  0.00  0.00           O+0
HETATM   64  O   UNK     0       8.700 -17.019   0.000  0.00  0.00           O+0
HETATM   65  O   UNK     0      -1.750  -6.387   0.000  0.00  0.00           O+0
HETATM   66  O   UNK     0      -0.851  -9.881   0.000  0.00  0.00           O+0
HETATM   67  O   UNK     0       1.660 -13.997   0.000  0.00  0.00           O+0
HETATM   68  O   UNK     0       0.830  -2.515   0.000  0.00  0.00           O+0
HETATM   69  O   UNK     0      11.634  -9.881   0.000  0.00  0.00           O+0
HETATM   70  O   UNK     0      11.199  -4.077   0.000  0.00  0.00           O+0
HETATM   71  O   UNK     0       1.614 -12.972   0.000  0.00  0.00           O+0
HETATM   72  O   UNK     0       6.391  -0.799   0.000  0.00  0.00           O+0
HETATM   73  O   UNK     0       7.368 -13.839   0.000  0.00  0.00           O+0
HETATM   74  H   UNK     0     -17.754  -3.307   0.000  0.00  0.00           H+0
HETATM   75  H   UNK     0     -12.420  -3.307   0.000  0.00  0.00           H+0
HETATM   76  H   UNK     0       2.816 -15.312   0.000  0.00  0.00           H+0
HETATM   77  H   UNK     0       3.188  -1.759   0.000  0.00  0.00           H+0
HETATM   78  H   UNK     0       8.864   0.099   0.000  0.00  0.00           H+0
HETATM   79  H   UNK     0       2.251  -5.617   0.000  0.00  0.00           H+0
HETATM   80  H   UNK     0       9.008  -7.702   0.000  0.00  0.00           H+0
HETATM   81  H   UNK     0       7.858  -4.772   0.000  0.00  0.00           H+0
HETATM   82  H   UNK     0       7.633 -13.087   0.000  0.00  0.00           H+0
HETATM   83  H   UNK     0       2.016  -8.755   0.000  0.00  0.00           H+0
HETATM   84  H   UNK     0       4.851  -3.845   0.000  0.00  0.00           H+0
HETATM   85  H   UNK     0       7.434 -10.427   0.000  0.00  0.00           H+0
HETATM   86  H   UNK     0       4.322 -10.896   0.000  0.00  0.00           H+0
HETATM   87  H   UNK     0       4.699 -13.492   0.000  0.00  0.00           H+0
CONECT    1    6                                                            
CONECT    2   28                                                            
CONECT    3   29                                                            
CONECT    4   30                                                            
CONECT    5   31                                                            
CONECT    6    1   28                                                       
CONECT    7    8    9                                                       
CONECT    8    7   10                                                       
CONECT    9    7   11                                                       
CONECT   10    8   12                                                       
CONECT   11    9   13                                                       
CONECT   12   10   14                                                       
CONECT   13   11   29                                                       
CONECT   14   12   40                                                       
CONECT   15   18   32                                                       
CONECT   16   19   32                                                       
CONECT   17   20   32                                                       
CONECT   18   15   33                                                       
CONECT   19   16   33                                                       
CONECT   20   17   36                                                       
CONECT   21   22   35                                                       
CONECT   22   21   41                                                       
CONECT   23   28   29                                                       
CONECT   24   34   37                                                       
CONECT   25   38   39                                                       
CONECT   26   30   59                                                       
CONECT   27   34   58                                                       
CONECT   28    2    6   23   74                                             
CONECT   29    3   13   23   75                                             
CONECT   30    4   26   45   76                                             
CONECT   31    5   42   60   77                                             
CONECT   32   15   16   17                                                  
CONECT   33   18   19   61                                                  
CONECT   34   24   27   62   78                                             
CONECT   35   21   46   53   79                                             
CONECT   36   20   47   54   80                                             
CONECT   37   24   48   58   81                                             
CONECT   38   25   43   63   82                                             
CONECT   39   25   52   64                                                  
CONECT   40   14   53   65                                                  
CONECT   41   22   55   66   83                                             
CONECT   42   31   50   56   84                                             
CONECT   43   38   51   57   85                                             
CONECT   44   45   49   59   86                                             
CONECT   45   30   44   67   87                                             
CONECT   46   35   56   68                                                  
CONECT   47   36   57   69                                                  
CONECT   48   37   54   70                                                  
CONECT   49   44   55   71                                                  
CONECT   50   42   58   72                                                  
CONECT   51   43   59   73                                                  
CONECT   52   39                                                            
CONECT   53   35   40                                                       
CONECT   54   36   48                                                       
CONECT   55   41   49                                                       
CONECT   56   42   46                                                       
CONECT   57   43   47                                                       
CONECT   58   27   37   50                                                  
CONECT   59   26   44   51                                                  
CONECT   60   31                                                            
CONECT   61   33                                                            
CONECT   62   34                                                            
CONECT   63   38                                                            
CONECT   64   39                                                            
CONECT   65   40                                                            
CONECT   66   41                                                            
CONECT   67   45                                                            
CONECT   68   46                                                            
CONECT   69   47                                                            
CONECT   70   48                                                            
CONECT   71   49                                                            
CONECT   72   50                                                            
CONECT   73   51                                                            
CONECT   74   28                                                            
CONECT   75   29                                                            
CONECT   76   30                                                            
CONECT   77   31                                                            
CONECT   78   34                                                            
CONECT   79   35                                                            
CONECT   80   36                                                            
CONECT   81   37                                                            
CONECT   82   38                                                            
CONECT   83   41                                                            
CONECT   84   42                                                            
CONECT   85   43                                                            
CONECT   86   44                                                            
CONECT   87   45                                                            
MASTER        0    0    0    0    0    0    0    0   87    0  180    0
END

Synonyms

Not Available

Molecular Formula

C₅₁H₈₂N₈O₁₄

Average Mass

1031.259

Monoisotopic Mass

1030.595049352

IUPAC Name

(10R,12S)-N-[(3S,6S,9S,11R,15S,18R,21R,24S,25S,26S)-5,8,11,17,21,23,25-heptahydroxy-3-[(1R)-1-hydroxy-2-(C-hydroxycarbonimidoyl)ethyl]-15-[(1R)-1-hydroxyethyl]-6-[2-(4-hydroxyphenyl)ethyl]-26-methyl-2,14-dioxo-1,4,7,13,16,22-hexaazatricyclo[22.3.0.0^{9,13}]heptacosa-4,7,16,22-tetraen-18-yl]-10,12-dimethyltetradecanimidic acid

Traditional Name

CAS Registry Number

Not Available

SMILES

[H][C@](C)(CC)C[C@]([H])(C)CCCCCCCCC(O)=N[C@]1([H])CC[C@@]([H])(O)N=C(O)[C@@]2([H])N(C[C@]([H])(C)[C@]2([H])O)C(=O)[C@@]([H])(N=C(O)[C@]([H])(CCC2=CC=C(O)C=C2)N=C(O)[C@]2([H])C[C@@]([H])(O)CN2C(=O)[C@@]([H])(N=C1O)[C@@]([H])(C)O)[C@]([H])(O)CC(O)=N

InChI Identifier

InChI=1S/C51H82N8O14/c1-6-28(2)23-29(3)13-11-9-7-8-10-12-14-40(65)53-35-21-22-41(66)55-49(71)44-45(67)30(4)26-59(44)51(73)43(38(63)25-39(52)64)57-47(69)36(20-17-32-15-18-33(61)19-16-32)54-48(70)37-24-34(62)27-58(37)50(72)42(31(5)60)56-46(35)68/h15-16,18-19,28-31,34-38,41-45,60-63,66-67H,6-14,17,20-27H2,1-5H3,(H2,52,64)(H,53,65)(H,54,70)(H,55,71)(H,56,68)(H,57,69)/t28-,29+,30-,31+,34+,35+,36-,37-,38+,41+,42-,43-,44-,45-/m0/s1

InChI Key

PVPPXJJCHCIYGN-FMLPGXNNSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Cyclic peptides

Alternative Parents

Substituents

Cyclic alpha peptide
Alpha-amino acid or derivatives
1-hydroxy-2-unsubstituted benzenoid
Phenol
Benzenoid
Monocyclic benzene moiety
Cyclic carboximidic acid
Tertiary carboxylic acid amide
Pyrrolidine
Secondary alcohol
Lactam
Carboxamide group
Azacycle
Organoheterocyclic compound
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Polyol
Carboximidic acid derivative
Carboximidic acid
Alkanolamine
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.051 g/L	ALOGPS
logP	2.36	ALOGPS
logP	1.68	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Acidic)	-1.1	ChemAxon
pKa (Strongest Basic)	12.61	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	20	ChemAxon
Hydrogen Donor Count	13	ChemAxon
Polar Surface Area	369.03 Å²	ChemAxon
Rotatable Bond Count	20	ChemAxon
Refractivity	278.37 m³·mol⁻¹	ChemAxon
Polarizability	111.36 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-10	View Spectrum
MS	Mass Spectrum (Electron Ionization)	Not Available	2022-08-06	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-23	515.0
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	208.0
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-23	804.6
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	605.8
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	596.9
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-23	125.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	2967.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	516.6
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	203.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	298.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	161.8
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	171.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	255.6
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	10.4
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	142.5
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	274.5
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	537.2
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	1678.7
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	1183.7

Retention Indices

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78436157

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139584716

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Pneumocandin A3 (MMDBc0006475)

MOL for #<Metabolite:0x00007f9ad8ffc768>

3D MOL for #<Metabolite:0x00007f9ad8ffc768>

3D SDF for #<Metabolite:0x00007f9ad8ffc768>

3D-SDF for #<Metabolite:0x00007f9ad8ffc768>

PDB for #<Metabolite:0x00007f9ad8ffc768>

3D PDB for #<Metabolite:0x00007f9ad8ffc768>

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Structure for #<Metabolite:0x00007f9ad8ffc768>

3D Structure for #<Metabolite:0x00007f9ad8ffc768>