MiMeDB: Showing metabocard for Spiruchostatin A (MMDBc0007845)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 00:53:09 UTC

Update Date

2025-10-07 16:05:23 UTC

Metabolite ID

MMDBc0007845

Metabolite Identification

Common Name

Spiruchostatin A

Description

Spiruchostatin A is a cyclic peptide-based natural product belonging to the chemical class of histone deacetylase inhibitors (HDACi). Derived from Pseudomonas sp., Spiruchostatin A, also known as YM753 and OBP801, exhibits potent inhibition of Class I HDACs, which plays a crucial role in the regulation of gene expression and cancer cell biology. Its antitumor efficacy has been evaluated across various cellular and animal models, demonstrating significant activities such as inducing apoptosis and inhibiting tumor growth (PMID:40082963 ). Spiruchostatin A's mechanism involves epigenetic modifications that alter cancer cell behavior, suggesting its potential as a therapeutic agent against multiple cancers (PMID:40082963 ). Moreover, studies have shown that Spiruchostatin A can synergistically enhance the effects of other treatments, such as FGFR inhibitors, thereby further inhibiting cell growth and promoting apoptosis in high-grade bladder cancer cells (PMID:29207153 ). Although the precise mechanisms of action remain to be fully elucidated, Spiruchostatin A and its analogs are being explored for their promising roles in chemotherapy, particularly for leukemia and other malignancies (PMID:25078973 ). Comprehensive clinical studies are essential to establish its therapeutic potential in oncology (PMID:40082963 ).

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152102532D          

 38 39  0  0  1  0            999 V2000
    4.8364   -1.5984    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1442   -2.8485    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6400    2.4169    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2422   -1.2434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4146   -1.7772    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2964   -0.4027    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2724   -1.6913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3261    0.9861    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9627   -1.8608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8885   -1.0541    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1295   -2.0236    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4423    1.6160    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3526    0.1419    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9810   -0.1142    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7580   -2.1876    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7757    1.6904    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4743   -1.0463    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4077   -1.6240    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2207    1.3065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4805   -0.7089    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6111    1.7042    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.8307    0.7283    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5526   -0.6978    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8913   -3.0017    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3732    2.4106    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7539   -1.4483    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6649    2.0018    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2263   -1.0617    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0828   -0.2902    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1029   -1.2298    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.9461   -1.0169    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9753   -1.6217    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0550   -0.0783    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2445    0.8150    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0627    0.5617    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7282    0.2354    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1121   -2.7009    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4937   -2.4445    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  4  1  0  0  0  0
  6  4  2  0  0  0  0
  7  5  1  0  0  0  0
 11  1  1  0  0  0  0
 11  2  1  0  0  0  0
 12  3  1  0  0  0  0
 13  6  1  0  0  0  0
 13  8  1  0  0  0  0
 14 10  1  0  0  0  0
 15  9  1  0  0  0  0
 16  8  1  0  0  0  0
 17  9  1  0  0  0  0
 18 11  1  0  0  0  0
 18 15  1  0  0  0  0
 19 12  1  0  0  0  0
 20 14  1  0  0  0  0
 21 12  1  0  0  0  0
 21 16  2  0  0  0  0
 22 14  1  0  0  0  0
 22 19  2  0  0  0  0
 23 18  1  4  0  0  0
 23 20  2  0  0  0  0
 24 15  1  0  0  0  0
 16 25  1  4  0  0  0
 26 17  2  0  0  0  0
 19 27  1  4  0  0  0
 28 20  1  0  0  0  0
 29 13  1  0  0  0  0
 29 17  1  0  0  0  0
 30  7  1  0  0  0  0
 31 10  1  0  0  0  0
 31 30  1  0  0  0  0
 32  4  1  0  0  0  0
 33  6  1  0  0  0  0
 12 34  1  1  0  0  0
 35 13  1  0  0  0  0
 14 36  1  6  0  0  0
 37 15  1  0  0  0  0
 38 18  1  0  0  0  0
M  END


  Mrv1652305152102532D          

 38 39  0  0  1  0            999 V2000
    4.8364   -1.5984    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1442   -2.8485    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6400    2.4169    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2422   -1.2434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4146   -1.7772    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2964   -0.4027    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2724   -1.6913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3261    0.9861    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9627   -1.8608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8885   -1.0541    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1295   -2.0236    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4423    1.6160    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3526    0.1419    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9810   -0.1142    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7580   -2.1876    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7757    1.6904    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4743   -1.0463    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4077   -1.6240    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2207    1.3065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4805   -0.7089    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6111    1.7042    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.8307    0.7283    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5526   -0.6978    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8913   -3.0017    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3732    2.4106    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7539   -1.4483    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6649    2.0018    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2263   -1.0617    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0828   -0.2902    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1029   -1.2298    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.9461   -1.0169    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9753   -1.6217    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0550   -0.0783    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2445    0.8150    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0627    0.5617    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7282    0.2354    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1121   -2.7009    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4937   -2.4445    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  4  1  0  0  0  0
  6  4  2  0  0  0  0
  7  5  1  0  0  0  0
 11  1  1  0  0  0  0
 11  2  1  0  0  0  0
 12  3  1  0  0  0  0
 13  6  1  0  0  0  0
 13  8  1  0  0  0  0
 14 10  1  0  0  0  0
 15  9  1  0  0  0  0
 16  8  1  0  0  0  0
 17  9  1  0  0  0  0
 18 11  1  0  0  0  0
 18 15  1  0  0  0  0
 19 12  1  0  0  0  0
 20 14  1  0  0  0  0
 21 12  1  0  0  0  0
 21 16  2  0  0  0  0
 22 14  1  0  0  0  0
 22 19  2  0  0  0  0
 23 18  1  4  0  0  0
 23 20  2  0  0  0  0
 24 15  1  0  0  0  0
 16 25  1  4  0  0  0
 26 17  2  0  0  0  0
 19 27  1  4  0  0  0
 28 20  1  0  0  0  0
 29 13  1  0  0  0  0
 29 17  1  0  0  0  0
 30  7  1  0  0  0  0
 31 10  1  0  0  0  0
 31 30  1  0  0  0  0
 32  4  1  0  0  0  0
 33  6  1  0  0  0  0
 12 34  1  1  0  0  0
 35 13  1  0  0  0  0
 14 36  1  6  0  0  0
 37 15  1  0  0  0  0
 38 18  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0007845

> <DATABASE_NAME>
MIME

> <SMILES>
[H]\C1=C([H])\C2([H])CC(O)=N[C@]([H])(C)C(O)=N[C@]([H])(CSSCC1)C(O)=NC([H])(C(C)C)C([H])(O)CC(=O)O2

> <INCHI_IDENTIFIER>
InChI=1S/C20H31N3O6S2/c1-11(2)18-15(24)9-17(26)29-13-6-4-5-7-30-31-10-14(20(28)23-18)22-19(27)12(3)21-16(25)8-13/h4,6,11-15,18,24H,5,7-10H2,1-3H3,(H,21,25)(H,22,27)(H,23,28)/b6-4-/t12-,13?,14-,15?,18?/m1/s1

> <INCHI_KEY>
XFLBOEMFLGLWFF-GCMQNPFRSA-N

> <FORMULA>
C20H31N3O6S2

> <MOLECULAR_WEIGHT>
473.6

> <EXACT_MASS>
473.165428078

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
62

> <JCHEM_AVERAGE_POLARIZABILITY>
47.4589055280201

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(9S,15E,20R)-5,8,18,21-tetrahydroxy-20-methyl-6-(propan-2-yl)-2-oxa-11,12-dithia-7,19,22-triazabicyclo[7.7.6]docosa-7,15,18,21-tetraen-3-one

> <ALOGPS_LOGP>
1.36

> <JCHEM_LOGP>
-5.636958050662638

> <ALOGPS_LOGS>
-3.51

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
-6.6583267120641

> <JCHEM_PKA_STRONGEST_ACIDIC>
-9.885928519069278

> <JCHEM_PKA_STRONGEST_BASIC>
15.72814969056012

> <JCHEM_POLAR_SURFACE_AREA>
144.3

> <JCHEM_REFRACTIVITY>
121.85199999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.45e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(9S,15E,20R)-5,8,18,21-tetrahydroxy-6-isopropyl-20-methyl-2-oxa-11,12-dithia-7,19,22-triazabicyclo[7.7.6]docosa-7,15,18,21-tetraen-3-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       9.028  -2.984   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.736  -5.317   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.928   4.512   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.452  -2.321   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.774  -3.317   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.553  -0.752   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.375  -3.157   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.609   1.841   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.664  -3.473   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.258  -1.968   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.708  -3.777   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.559   3.016   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.658   0.265   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.431  -0.213   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.148  -4.083   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.448   3.155   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.752  -1.953   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.361  -3.031   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.012   2.439   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.364  -1.323   0.000  0.00  0.00           C+0
HETATM   21  N   UNK     0       3.007   3.181   0.000  0.00  0.00           N+0
HETATM   22  N   UNK     0       7.151   1.360   0.000  0.00  0.00           N+0
HETATM   23  N   UNK     0       6.632  -1.302   0.000  0.00  0.00           N+0
HETATM   24  O   UNK     0       5.397  -5.603   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       0.697   4.500   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       1.407  -2.703   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       6.841   3.737   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0       9.756  -1.982   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       2.021  -0.542   0.000  0.00  0.00           O+0
HETATM   30  S   UNK     0       3.925  -2.296   0.000  0.00  0.00           S+0
HETATM   31  S   UNK     0       5.499  -1.898   0.000  0.00  0.00           S+0
HETATM   32  H   UNK     0      -1.821  -3.027   0.000  0.00  0.00           H+0
HETATM   33  H   UNK     0      -1.969  -0.146   0.000  0.00  0.00           H+0
HETATM   34  H   UNK     0       4.190   1.521   0.000  0.00  0.00           H+0
HETATM   35  H   UNK     0       1.984   1.049   0.000  0.00  0.00           H+0
HETATM   36  H   UNK     0       8.826   0.439   0.000  0.00  0.00           H+0
HETATM   37  H   UNK     0       3.943  -5.042   0.000  0.00  0.00           H+0
HETATM   38  H   UNK     0       6.522  -4.563   0.000  0.00  0.00           H+0
CONECT    1   11                                                            
CONECT    2   11                                                            
CONECT    3   12                                                            
CONECT    4    5    6   32                                                  
CONECT    5    4    7                                                       
CONECT    6    4   13   33                                                  
CONECT    7    5   30                                                       
CONECT    8   13   16                                                       
CONECT    9   15   17                                                       
CONECT   10   14   31                                                       
CONECT   11    1    2   18                                                  
CONECT   12    3   19   21   34                                             
CONECT   13    6    8   29   35                                             
CONECT   14   10   20   22   36                                             
CONECT   15    9   18   24   37                                             
CONECT   16    8   21   25                                                  
CONECT   17    9   26   29                                                  
CONECT   18   11   15   23   38                                             
CONECT   19   12   22   27                                                  
CONECT   20   14   23   28                                                  
CONECT   21   12   16                                                       
CONECT   22   14   19                                                       
CONECT   23   18   20                                                       
CONECT   24   15                                                            
CONECT   25   16                                                            
CONECT   26   17                                                            
CONECT   27   19                                                            
CONECT   28   20                                                            
CONECT   29   13   17                                                       
CONECT   30    7   31                                                       
CONECT   31   10   30                                                       
CONECT   32    4                                                            
CONECT   33    6                                                            
CONECT   34   12                                                            
CONECT   35   13                                                            
CONECT   36   14                                                            
CONECT   37   15                                                            
CONECT   38   18                                                            
MASTER        0    0    0    0    0    0    0    0   38    0   78    0
END

Synonyms

Not Available

Molecular Formula

C₂₀H₃₁N₃O₆S₂

Average Mass

473.6

Monoisotopic Mass

473.165428078

IUPAC Name

(9S,15E,20R)-5,8,18,21-tetrahydroxy-20-methyl-6-(propan-2-yl)-2-oxa-11,12-dithia-7,19,22-triazabicyclo[7.7.6]docosa-7,15,18,21-tetraen-3-one

Traditional Name

(9S,15E,20R)-5,8,18,21-tetrahydroxy-6-isopropyl-20-methyl-2-oxa-11,12-dithia-7,19,22-triazabicyclo[7.7.6]docosa-7,15,18,21-tetraen-3-one

CAS Registry Number

Not Available

SMILES

[H]\C1=C([H])\C2([H])CC(O)=N[C@]([H])(C)C(O)=N[C@]([H])(CSSCC1)C(O)=NC([H])(C(C)C)C([H])(O)CC(=O)O2

InChI Identifier

InChI=1S/C20H31N3O6S2/c1-11(2)18-15(24)9-17(26)29-13-6-4-5-7-30-31-10-14(20(28)23-18)22-19(27)12(3)21-16(25)8-13/h4,6,11-15,18,24H,5,7-10H2,1-3H3,(H,21,25)(H,22,27)(H,23,28)/b6-4-/t12-,13?,14-,15?,18?/m1/s1

InChI Key

XFLBOEMFLGLWFF-GCMQNPFRSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Cyclic peptides

Alternative Parents

Substituents

Cyclic alpha peptide
Macrolide
Cyclic carboximidic acid
Secondary alcohol
Organic disulfide
Lactone
Carboxylic acid ester
Oxacycle
Azacycle
Organoheterocyclic compound
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Polyol
Monocarboxylic acid or derivatives
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.14 g/L	ALOGPS
logP	1.36	ALOGPS
logP	-5.6	ChemAxon
logS	-3.5	ALOGPS
pKa (Strongest Acidic)	-9.9	ChemAxon
pKa (Strongest Basic)	15.73	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	144.3 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	121.85 m³·mol⁻¹	ChemAxon
Polarizability	47.46 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

This table shows at most 5 pathways. For the full list of associated pathways:

See All Associated Bacterial Pathways

Name	SMPDB/PathBank	Species

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	1	Human feces; Human	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Spiruchostatin A (MMDBc0007845)

MOL for #<Metabolite:0x00007f2ab838c6a8>

3D MOL for #<Metabolite:0x00007f2ab838c6a8>

3D SDF for #<Metabolite:0x00007f2ab838c6a8>

3D-SDF for #<Metabolite:0x00007f2ab838c6a8>

PDB for #<Metabolite:0x00007f2ab838c6a8>

3D PDB for #<Metabolite:0x00007f2ab838c6a8>

SMILES for #<Metabolite:0x00007f2ab838c6a8>

INCHI for #<Metabolite:0x00007f2ab838c6a8>

Structure for #<Metabolite:0x00007f2ab838c6a8>

3D Structure for #<Metabolite:0x00007f2ab838c6a8>