MiMeDB: Showing metabocard for Colletopiperazine (MMDBc0010212)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 02:27:45 UTC

Update Date

2025-10-07 16:05:42 UTC

Metabolite ID

MMDBc0010212

Metabolite Identification

Common Name

Colletopiperazine

Description

Colletopiperazine is a diketopiperazine (DKP) derivative, a class of cyclic dipeptides known for their diverse biological activities. This compound was isolated from the cultures of endophytic fungi, specifically Colletotrichum gloeosporioides and Penicillium crustosum, both sourced from the plant Viguiera robusta, as well as from a Fusarium species associated with Viguiera arenaria. The discovery of colletopiperazine alongside other DKP derivatives highlights the potential of these metabolites in the field of natural products and their significance in the ecological interactions between fungi and their host plants. The structural uniqueness of diketopiperazines, including colletopiperazine, contributes to their varied pharmacological properties, making them subjects of interest in medicinal chemistry and drug development. The isolation and characterization of such compounds from endophytic fungi underscore the importance of these organisms as sources of bioactive natural products, which may offer novel therapeutic options. (PMID:20541231 )

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152104272D          

 22 24  0  0  1  0            999 V2000
   -0.8995    0.7556    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8333   -1.4623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9604    0.5840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4084    1.1971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7054   -0.2006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9339    1.5105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6545   -0.3154    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6014    1.0256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2665    1.0256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8985   -0.3721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3464    0.2410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4595    1.1971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9694   -0.3721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1624   -0.2006    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0925    0.5840    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5214    0.2410    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9636   -1.0803    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6435   -1.1567    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2046    1.9817    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2243   -1.1567    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1336   -1.0251    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    0.4125    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  4  3  2  0  0  0  0
  5  3  1  0  0  0  0
  8  4  1  0  0  0  0
  8  6  1  0  0  0  0
  9  6  1  0  0  0  0
 10  5  2  0  0  0  0
 11  8  2  0  0  0  0
 11 10  1  0  0  0  0
 12  9  1  0  0  0  0
 14  7  1  6  0  0  0
 14 13  1  0  0  0  0
 15  1  1  0  0  0  0
 15 12  1  0  0  0  0
 15 14  1  0  0  0  0
 16  9  1  0  0  0  0
 16 11  1  0  0  0  0
 16 13  1  0  0  0  0
 17  7  1  0  0  0  0
 18 10  1  0  0  0  0
 19 12  2  0  0  0  0
 20 13  2  0  0  0  0
 21  2  1  0  0  0  0
 14 21  1  1  0  0  0
 22  9  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0010212

> <DATABASE_NAME>
MIME

> <SMILES>
[H]C12CC3=C(N1C(=O)[C@@](CO)(SC)N(C)C2=O)C(O)=CC=C3

> <INCHI_IDENTIFIER>
InChI=1S/C14H16N2O4S/c1-15-12(19)9-6-8-4-3-5-10(18)11(8)16(9)13(20)14(15,7-17)21-2/h3-5,9,17-18H,6-7H2,1-2H3/t9?,14-/m1/s1

> <INCHI_KEY>
HLTTVBPDCRSKFJ-IWSPRGBSSA-N

> <FORMULA>
C14H16N2O4S

> <MOLECULAR_WEIGHT>
308.35

> <EXACT_MASS>
308.083078177

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
37

> <JCHEM_AVERAGE_POLARIZABILITY>
30.929862360515077

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R)-6-hydroxy-3-(hydroxymethyl)-2-methyl-3-(methylsulfanyl)-1H,2H,3H,4H,10H,10aH-pyrazino[1,2-a]indole-1,4-dione

> <ALOGPS_LOGP>
0.12

> <JCHEM_LOGP>
0.7582057019999999

> <ALOGPS_LOGS>
-1.17

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.166300262551786

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.580450197800197

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1542499245361633

> <JCHEM_POLAR_SURFACE_AREA>
81.08000000000001

> <JCHEM_REFRACTIVITY>
78.57180000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.10e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R)-6-hydroxy-3-(hydroxymethyl)-2-methyl-3-(methylsulfanyl)-10H,10aH-pyrazino[1,2-a]indole-1,4-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0      -1.679   1.410   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.555  -2.730   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.393   1.090   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.362   2.235   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.917  -0.374   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.610   2.820   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.222  -0.589   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.856   1.914   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.364   1.914   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.410  -0.695   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.380   0.450   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.858   2.235   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.810  -0.695   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.303  -0.374   0.000  0.00  0.00           C+0
HETATM   15  N   UNK     0      -0.173   1.090   0.000  0.00  0.00           N+0
HETATM   16  N   UNK     0       2.840   0.450   0.000  0.00  0.00           N+0
HETATM   17  O   UNK     0      -1.799  -2.017   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       4.935  -2.159   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       0.382   3.699   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       2.285  -2.159   0.000  0.00  0.00           O+0
HETATM   21  S   UNK     0       0.249  -1.914   0.000  0.00  0.00           S+0
HETATM   22  H   UNK     0       1.334   0.770   0.000  0.00  0.00           H+0
CONECT    1   15                                                            
CONECT    2   21                                                            
CONECT    3    4    5                                                       
CONECT    4    3    8                                                       
CONECT    5    3   10                                                       
CONECT    6    8    9                                                       
CONECT    7   14   17                                                       
CONECT    8    4    6   11                                                  
CONECT    9    6   12   16   22                                             
CONECT   10    5   11   18                                                  
CONECT   11    8   10   16                                                  
CONECT   12    9   15   19                                                  
CONECT   13   14   16   20                                                  
CONECT   14    7   13   15   21                                             
CONECT   15    1   12   14                                                  
CONECT   16    9   11   13                                                  
CONECT   17    7                                                            
CONECT   18   10                                                            
CONECT   19   12                                                            
CONECT   20   13                                                            
CONECT   21    2   14                                                       
CONECT   22    9                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   48    0
END

Synonyms

Not Available

Molecular Formula

C₁₄H₁₆N₂O₄S

Average Mass

308.35

Monoisotopic Mass

308.083078177

IUPAC Name

(3R)-6-hydroxy-3-(hydroxymethyl)-2-methyl-3-(methylsulfanyl)-1H,2H,3H,4H,10H,10aH-pyrazino[1,2-a]indole-1,4-dione

Traditional Name

(3R)-6-hydroxy-3-(hydroxymethyl)-2-methyl-3-(methylsulfanyl)-10H,10aH-pyrazino[1,2-a]indole-1,4-dione

CAS Registry Number

Not Available

SMILES

[H]C12CC3=C(N1C(=O)[C@@](CO)(SC)N(C)C2=O)C(O)=CC=C3

InChI Identifier

InChI=1S/C14H16N2O4S/c1-15-12(19)9-6-8-4-3-5-10(18)11(8)16(9)13(20)14(15,7-17)21-2/h3-5,9,17-18H,6-7H2,1-2H3/t9?,14-/m1/s1

InChI Key

HLTTVBPDCRSKFJ-IWSPRGBSSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as indolecarboxylic acids and derivatives. Indolecarboxylic acids and derivatives are compounds containing a carboxylic acid group (or a derivative thereof) linked to an indole.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Indolecarboxylic acids and derivatives

Direct Parent

Indolecarboxylic acids and derivatives

Alternative Parents

Substituents

Indolecarboxylic acid derivative
Alpha-amino acid or derivatives
Thiodioxopiperazine
Dioxopiperazine
2,5-dioxopiperazine
1-hydroxy-2-unsubstituted benzenoid
1-hydroxy-4-unsubstituted benzenoid
N-methylpiperazine
N-alkylpiperazine
1,4-diazinane
Piperazine
Benzenoid
Tertiary carboxylic acid amide
Carboxamide group
Lactam
Dialkylthioether
Azacycle
Carboxylic acid derivative
Sulfenyl compound
Hemithioaminal
Thioether
Organooxygen compound
Organonitrogen compound
Carbonyl group
Organic oxide
Organopnictogen compound
Organic oxygen compound
Organosulfur compound
Organic nitrogen compound
Primary alcohol
Hydrocarbon derivative
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	21 g/L	ALOGPS
logP	0.12	ALOGPS
logP	0.76	ChemAxon
logS	-1.2	ALOGPS
pKa (Strongest Acidic)	8.58	ChemAxon
pKa (Strongest Basic)	-3.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	81.08 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	78.57 m³·mol⁻¹	ChemAxon
Polarizability	30.93 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-09	View Spectrum
MS	Mass Spectrum (Electron Ionization)	Not Available	2022-08-06	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-21	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

This table shows at most 5 pathways. For the full list of associated pathways:

See All Associated Bacterial Pathways

Name	SMPDB/PathBank	Species

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78442625

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139585799

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Colletopiperazine (MMDBc0010212)

MOL for #<Metabolite:0x00007f2ad0010728>

3D MOL for #<Metabolite:0x00007f2ad0010728>

3D SDF for #<Metabolite:0x00007f2ad0010728>

3D-SDF for #<Metabolite:0x00007f2ad0010728>

PDB for #<Metabolite:0x00007f2ad0010728>

3D PDB for #<Metabolite:0x00007f2ad0010728>

SMILES for #<Metabolite:0x00007f2ad0010728>

INCHI for #<Metabolite:0x00007f2ad0010728>

Structure for #<Metabolite:0x00007f2ad0010728>

3D Structure for #<Metabolite:0x00007f2ad0010728>