MiMeDB: Showing metabocard for 5-methyl-8-(3-methylbut-2-enyl) furanocoumarin (MMDBc0012191)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 03:48:04 UTC

Update Date

2025-10-07 16:05:58 UTC

Metabolite ID

MMDBc0012191

Metabolite Identification

Common Name

5-methyl-8-(3-methylbut-2-enyl) furanocoumarin

Description

5-methyl-8-(3-methylbut-2-enyl) furanocoumarin is a furanocoumarin, a class of compounds known for their diverse biological activities and presence in various plant species. This particular metabolite was identified as a novel compound isolated from the mangrove endophytic fungus, Penicillium sp., alongside several known compounds such as sterequinone C and bergapten (PMID:21972976 ). Furanocoumarins are recognized for their potential pharmacological properties, including anti-inflammatory and antimicrobial effects, which may be attributed to their ability to interact with various biological pathways. The structural features of 5-methyl-8-(3-methylbut-2-enyl) furanocoumarin, including its methyl and enyl substituents, may influence its biological activity and solubility, making it a subject of interest for further investigation in medicinal chemistry. Understanding the biosynthetic pathways and ecological roles of such metabolites can provide insights into their potential applications in drug development and therapeutic strategies.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152105482D          

 20 22  0  0  0  0            999 V2000
    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3570   -0.1576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8419   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3570   -1.4924    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  5  4  1  0  0  0  0
  7  6  2  0  0  0  0
  9  8  2  0  0  0  0
 10  1  1  0  0  0  0
 10  2  1  0  0  0  0
 10  4  2  0  0  0  0
 11  3  1  0  0  0  0
 12  6  1  0  0  0  0
 12 11  2  0  0  0  0
 13  8  1  0  0  0  0
 13 11  1  0  0  0  0
 14  5  1  0  0  0  0
 15  7  1  0  0  0  0
 16 13  2  0  0  0  0
 16 14  1  0  0  0  0
 17 12  1  0  0  0  0
 17 14  2  0  0  0  0
 18 15  2  0  0  0  0
 19  9  1  0  0  0  0
 19 16  1  0  0  0  0
 20 15  1  0  0  0  0
 20 17  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0012191

> <DATABASE_NAME>
MIME

> <SMILES>
CC(C)=CCC1=C2OC(=O)C=CC2=C(C)C2=C1OC=C2

> <INCHI_IDENTIFIER>
InChI=1S/C17H16O3/c1-10(2)4-5-14-16-13(8-9-19-16)11(3)12-6-7-15(18)20-17(12)14/h4,6-9H,5H2,1-3H3

> <INCHI_KEY>
XWLUVSYTCOKRQM-UHFFFAOYSA-N

> <FORMULA>
C17H16O3

> <MOLECULAR_WEIGHT>
268.312

> <EXACT_MASS>
268.109944375

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
28.970960032764612

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
4-methyl-9-(3-methylbut-2-en-1-yl)-7H-furo[3,2-g]chromen-7-one

> <ALOGPS_LOGP>
4.22

> <JCHEM_LOGP>
4.184471404666667

> <ALOGPS_LOGS>
-4.28

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-2.858742268977162

> <JCHEM_POLAR_SURFACE_AREA>
39.44

> <JCHEM_REFRACTIVITY>
79.6737

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.41e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4-methyl-9-(3-methylbut-2-en-1-yl)furo[3,2-g]chromen-7-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.133  -0.294   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.038  -1.540   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       0.000  -3.080   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       8.133  -2.786   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       2.667  -3.080   0.000  0.00  0.00           O+0
CONECT    1   10                                                            
CONECT    2   10                                                            
CONECT    3   11                                                            
CONECT    4    5   10                                                       
CONECT    5    4   14                                                       
CONECT    6    7   12                                                       
CONECT    7    6   15                                                       
CONECT    8    9   13                                                       
CONECT    9    8   19                                                       
CONECT   10    1    2    4                                                  
CONECT   11    3   12   13                                                  
CONECT   12    6   11   17                                                  
CONECT   13    8   11   16                                                  
CONECT   14    5   16   17                                                  
CONECT   15    7   18   20                                                  
CONECT   16   13   14   19                                                  
CONECT   17   12   14   20                                                  
CONECT   18   15                                                            
CONECT   19    9   16                                                       
CONECT   20   15   17                                                       
MASTER        0    0    0    0    0    0    0    0   20    0   44    0
END

Synonyms

Not Available

Molecular Formula

C₁₇H₁₆O₃

Average Mass

268.312

Monoisotopic Mass

268.109944375

IUPAC Name

4-methyl-9-(3-methylbut-2-en-1-yl)-7H-furo[3,2-g]chromen-7-one

Traditional Name

4-methyl-9-(3-methylbut-2-en-1-yl)furo[3,2-g]chromen-7-one

CAS Registry Number

Not Available

SMILES

CC(C)=CCC1=C2OC(=O)C=CC2=C(C)C2=C1OC=C2

InChI Identifier

InChI=1S/C17H16O3/c1-10(2)4-5-14-16-13(8-9-19-16)11(3)12-6-7-15(18)20-17(12)14/h4,6-9H,5H2,1-3H3

InChI Key

XWLUVSYTCOKRQM-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as psoralens. These are organic compounds containing a psoralen moiety, which consists of a furan fused to a chromenone to for 7H-furo[3,2-g]chromen-7-one.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Coumarins and derivatives

Sub Class

Furanocoumarins

Direct Parent

Psoralens

Alternative Parents

Substituents

Psoralen
Benzopyran
1-benzopyran
Benzofuran
Pyranone
Benzenoid
Pyran
Furan
Heteroaromatic compound
Lactone
Oxacycle
Organoheterocyclic compound
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.014 g/L	ALOGPS
logP	4.22	ALOGPS
logP	4.18	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	39.44 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	79.67 m³·mol⁻¹	ChemAxon
Polarizability	28.97 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	2	Human feces; Human sputum; Human	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78434904

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139586385

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for 5-methyl-8-(3-methylbut-2-enyl) furanocoumarin (MMDBc0012191)

MOL for #<Metabolite:0x00005560b1247680>

3D MOL for #<Metabolite:0x00005560b1247680>

3D SDF for #<Metabolite:0x00005560b1247680>

3D-SDF for #<Metabolite:0x00005560b1247680>

PDB for #<Metabolite:0x00005560b1247680>

3D PDB for #<Metabolite:0x00005560b1247680>

SMILES for #<Metabolite:0x00005560b1247680>

INCHI for #<Metabolite:0x00005560b1247680>

Structure for #<Metabolite:0x00005560b1247680>

3D Structure for #<Metabolite:0x00005560b1247680>