MiMeDB: Showing metabocard for Prenpenicillide (MMDBc0012591)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 04:06:03 UTC

Update Date

2025-10-07 16:06:01 UTC

Metabolite ID

MMDBc0012591

Metabolite Identification

Common Name

Prenpenicillide

Description

Prenpenicillide is a β-lactam antibiotic metabolite. There is limited literature available on this compound, indicating that further research may be necessary to fully understand its properties and potential applications.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152106062D          

 26 28  0  0  0  0            999 V2000
    6.4808   -3.1537    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1606   -2.6069    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6400   -1.0825    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6055    0.3343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2943   -1.7370    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7920   -1.0825    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6584   -1.9524    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8404   -2.0600    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6801   -0.5356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4936   -1.9524    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8138    0.1189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9785   -2.4992    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1779   -1.1901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9741   -1.1901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4981   -0.6433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3116   -2.0600    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3382   -1.4055    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6539   -0.6433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8138   -1.4055    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4719   -0.5356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3382    0.1189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6273   -2.8222    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9216    0.7022    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7876    0.2266    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5760    0.4346    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5760   -1.7212    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  6  5  1  0  0  0  0
  8  7  2  0  0  0  0
 12  1  1  0  0  0  0
 12  2  1  0  0  0  0
 12  5  2  0  0  0  0
 13  3  1  0  0  0  0
 13  9  2  0  0  0  0
 13 10  1  0  0  0  0
 14  6  1  0  0  0  0
 14  7  1  0  0  0  0
 15  9  1  0  0  0  0
 15 11  1  0  0  0  0
 16 10  2  0  0  0  0
 17  8  1  0  0  0  0
 18 17  2  0  0  0  0
 19 15  2  0  0  0  0
 19 16  1  0  0  0  0
 20 14  2  0  0  0  0
 20 18  1  0  0  0  0
 21 18  1  0  0  0  0
 22 16  1  0  0  0  0
 23 21  2  0  0  0  0
 24  4  1  0  0  0  0
 24 20  1  0  0  0  0
 25 11  1  0  0  0  0
 25 21  1  0  0  0  0
 26 17  1  0  0  0  0
 26 19  1  0  0  0  0
M  END


  Mrv1652305152106062D          

 26 28  0  0  0  0            999 V2000
    6.4808   -3.1537    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1606   -2.6069    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6400   -1.0825    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6055    0.3343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2943   -1.7370    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7920   -1.0825    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6584   -1.9524    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8404   -2.0600    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6801   -0.5356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4936   -1.9524    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8138    0.1189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9785   -2.4992    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1779   -1.1901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9741   -1.1901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4981   -0.6433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3116   -2.0600    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3382   -1.4055    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6539   -0.6433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8138   -1.4055    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4719   -0.5356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3382    0.1189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6273   -2.8222    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9216    0.7022    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7876    0.2266    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5760    0.4346    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5760   -1.7212    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  6  5  1  0  0  0  0
  8  7  2  0  0  0  0
 12  1  1  0  0  0  0
 12  2  1  0  0  0  0
 12  5  2  0  0  0  0
 13  3  1  0  0  0  0
 13  9  2  0  0  0  0
 13 10  1  0  0  0  0
 14  6  1  0  0  0  0
 14  7  1  0  0  0  0
 15  9  1  0  0  0  0
 15 11  1  0  0  0  0
 16 10  2  0  0  0  0
 17  8  1  0  0  0  0
 18 17  2  0  0  0  0
 19 15  2  0  0  0  0
 19 16  1  0  0  0  0
 20 14  2  0  0  0  0
 20 18  1  0  0  0  0
 21 18  1  0  0  0  0
 22 16  1  0  0  0  0
 23 21  2  0  0  0  0
 24  4  1  0  0  0  0
 24 20  1  0  0  0  0
 25 11  1  0  0  0  0
 25 21  1  0  0  0  0
 26 17  1  0  0  0  0
 26 19  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0012591

> <DATABASE_NAME>
MIME

> <SMILES>
COC1=C(CC=C(C)C)C=CC2=C1C(=O)OCC1=C(O2)C(O)=CC(C)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C21H22O5/c1-12(2)5-6-14-7-8-17-18(20(14)24-4)21(23)25-11-15-9-13(3)10-16(22)19(15)26-17/h5,7-10,22H,6,11H2,1-4H3

> <INCHI_KEY>
DAYHBPLBWJDGSZ-UHFFFAOYSA-N

> <FORMULA>
C21H22O5

> <MOLECULAR_WEIGHT>
354.402

> <EXACT_MASS>
354.146723808

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
38.49701594627227

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
16-hydroxy-7-methoxy-14-methyl-6-(3-methylbut-2-en-1-yl)-2,10-dioxatricyclo[10.4.0.0^{3,8}]hexadeca-1(12),3(8),4,6,13,15-hexaen-9-one

> <ALOGPS_LOGP>
3.84

> <JCHEM_LOGP>
4.808989065666667

> <ALOGPS_LOGS>
-4.66

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.228709251218937

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.395559146549804

> <JCHEM_PKA_STRONGEST_BASIC>
-3.752838625467916

> <JCHEM_POLAR_SURFACE_AREA>
64.99000000000001

> <JCHEM_REFRACTIVITY>
100.60679999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
7.75e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
16-hydroxy-7-methoxy-14-methyl-6-(3-methylbut-2-en-1-yl)-2,10-dioxatricyclo[10.4.0.0^{3,8}]hexadeca-1(12),3(8),4,6,13,15-hexaen-9-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0      12.097  -5.887   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.633  -4.866   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.195  -2.021   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.464   0.624   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      11.749  -3.242   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.812  -2.021   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.696  -3.644   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.169  -3.845   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.270  -1.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.921  -3.644   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.386   0.222   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      11.160  -4.665   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.332  -2.222   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.285  -2.222   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.796  -1.201   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.448  -3.845   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.231  -2.624   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.821  -1.201   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.386  -2.624   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.347  -1.000   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.231   0.222   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       3.038  -5.268   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       7.320   1.311   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0       8.937   0.423   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       4.809   0.811   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       4.809  -3.213   0.000  0.00  0.00           O+0
CONECT    1   12                                                            
CONECT    2   12                                                            
CONECT    3   13                                                            
CONECT    4   24                                                            
CONECT    5    6   12                                                       
CONECT    6    5   14                                                       
CONECT    7    8   14                                                       
CONECT    8    7   17                                                       
CONECT    9   13   15                                                       
CONECT   10   13   16                                                       
CONECT   11   15   25                                                       
CONECT   12    1    2    5                                                  
CONECT   13    3    9   10                                                  
CONECT   14    6    7   20                                                  
CONECT   15    9   11   19                                                  
CONECT   16   10   19   22                                                  
CONECT   17    8   18   26                                                  
CONECT   18   17   20   21                                                  
CONECT   19   15   16   26                                                  
CONECT   20   14   18   24                                                  
CONECT   21   18   23   25                                                  
CONECT   22   16                                                            
CONECT   23   21                                                            
CONECT   24    4   20                                                       
CONECT   25   11   21                                                       
CONECT   26   17   19                                                       
MASTER        0    0    0    0    0    0    0    0   26    0   56    0
END

Synonyms

Not Available

Molecular Formula

C₂₁H₂₂O₅

Average Mass

354.402

Monoisotopic Mass

354.146723808

IUPAC Name

16-hydroxy-7-methoxy-14-methyl-6-(3-methylbut-2-en-1-yl)-2,10-dioxatricyclo[10.4.0.0^{3,8}]hexadeca-1(12),3(8),4,6,13,15-hexaen-9-one

Traditional Name

16-hydroxy-7-methoxy-14-methyl-6-(3-methylbut-2-en-1-yl)-2,10-dioxatricyclo[10.4.0.0^{3,8}]hexadeca-1(12),3(8),4,6,13,15-hexaen-9-one

CAS Registry Number

Not Available

SMILES

COC1=C(CC=C(C)C)C=CC2=C1C(=O)OCC1=C(O2)C(O)=CC(C)=C1

InChI Identifier

InChI=1S/C21H22O5/c1-12(2)5-6-14-7-8-17-18(20(14)24-4)21(23)25-11-15-9-13(3)10-16(22)19(15)26-17/h5,7-10,22H,6,11H2,1-4H3

InChI Key

DAYHBPLBWJDGSZ-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diarylethers. These are organic compounds containing the dialkyl ether functional group, with the formula ROR', where R and R' are aryl groups.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Ethers

Direct Parent

Diarylethers

Alternative Parents

Substituents

Diaryl ether
Anisole
Phenol ether
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Phenol
Benzenoid
Carboxylic acid ester
Lactone
Oxacycle
Carboxylic acid derivative
Organoheterocyclic compound
Organic oxide
Hydrocarbon derivative
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.0078 g/L	ALOGPS
logP	3.84	ALOGPS
logP	4.81	ChemAxon
logS	-4.7	ALOGPS
pKa (Strongest Acidic)	8.4	ChemAxon
pKa (Strongest Basic)	-3.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	64.99 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	100.61 m³·mol⁻¹	ChemAxon
Polarizability	38.5 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

This table shows at most 5 pathways. For the full list of associated pathways:

See All Associated Bacterial Pathways

Name	SMPDB/PathBank	Species

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

29215533

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

71569925

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Prenpenicillide (MMDBc0012591)

MOL for #<Metabolite:0x00007f2a92bbde88>

3D MOL for #<Metabolite:0x00007f2a92bbde88>

3D SDF for #<Metabolite:0x00007f2a92bbde88>

3D-SDF for #<Metabolite:0x00007f2a92bbde88>

PDB for #<Metabolite:0x00007f2a92bbde88>

3D PDB for #<Metabolite:0x00007f2a92bbde88>

SMILES for #<Metabolite:0x00007f2a92bbde88>

INCHI for #<Metabolite:0x00007f2a92bbde88>

Structure for #<Metabolite:0x00007f2a92bbde88>

3D Structure for #<Metabolite:0x00007f2a92bbde88>