MiMeDB: Showing metabocard for WB2838 (MMDBc0013194)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 04:32:24 UTC

Update Date

2025-10-07 16:06:05 UTC

Metabolite ID

MMDBc0013194

Metabolite Identification

Common Name

WB2838

Description

WB2838 is a non-steroidal androgen-receptor antagonist belonging to the chemical class of pyrroles, specifically identified as 3-chloro-4-(2-amino-3-chlorophenyl)-pyrrole. This compound was isolated from a Pseudomonas species and has been characterized in biomedical literature for its biological activity. The IC50 value of WB2838 for partially purified rat prostate cytosol receptor is reported to be 8.0 x 10(-7) M, indicating its potency as an androgen-receptor antagonist (PMID:8226310 ). Notably, its IC50 value against estrogen-receptor binding is approximately 90-fold greater than that against androgen-receptor binding, highlighting its selectivity (PMID:8226310 ). Furthermore, WB2838 inhibits the growth of androgen-responsive mouse mammary carcinoma SC-3 cells in the presence of testosterone, with an IC50 value of 4.1 x 10(-7) M (PMID:8226310 ). It also demonstrates inhibitory activity against the growth of the ventral prostate induced by testosterone propionate in castrated immature rats (PMID:8226310 ). These findings collectively support the conclusion that WB2838 functions as a non-steroidal androgen-receptor antagonist (PMID:8226310 ).

Structure

MOL SDF PDB SMILES InChI


  Mrv1533004261505342D          

 14 15  0  0  0  0            999 V2000
    1.3222    0.7634    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0367    1.1759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0367    2.0009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3222    2.4134    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    2.7512    2.4134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    2.0009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    1.1759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7512    0.7634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7512   -0.0616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4186   -0.5465    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1637   -1.3312    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.3387   -1.3312    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0837   -0.5465    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2991   -0.2916    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  2  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
  9 13  1  0  0  0  0
 13 14  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0013194

> <DATABASE_NAME>
MIME

> <SMILES>
NC1=C(Cl)C=CC=C1C1=CNC=C1Cl

> <INCHI_IDENTIFIER>
InChI=1S/C10H8Cl2N2/c11-8-3-1-2-6(10(8)13)7-4-14-5-9(7)12/h1-5,14H,13H2

> <INCHI_KEY>
RWAXAHFFXZKMPA-UHFFFAOYSA-N

> <FORMULA>
C10H8Cl2N2

> <MOLECULAR_WEIGHT>
227.09

> <EXACT_MASS>
226.0064537

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
22

> <JCHEM_AVERAGE_POLARIZABILITY>
21.695216165336653

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-chloro-6-(4-chloro-1H-pyrrol-3-yl)aniline

> <ALOGPS_LOGP>
3.56

> <JCHEM_LOGP>
3.079518689333333

> <ALOGPS_LOGS>
-2.74

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.35428892225527

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.06606596889617

> <JCHEM_PKA_STRONGEST_BASIC>
1.9909769447785055

> <JCHEM_POLAR_SURFACE_AREA>
41.81

> <JCHEM_REFRACTIVITY>
60.263000000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.17e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-chloro-6-(4-chloro-1H-pyrrol-3-yl)aniline

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 26-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-APR-15         0                                  
HETATM    1  N   UNK     0       2.468   1.425   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0       3.802   2.195   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.802   3.735   0.000  0.00  0.00           C+0
HETATM    4 Cl   UNK     0       2.468   4.505   0.000  0.00  0.00          Cl+0
HETATM    5  C   UNK     0       5.136   4.505   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.469   3.735   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.469   2.195   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.136   1.425   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.136  -0.115   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.381  -1.020   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       5.906  -2.485   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0       4.366  -2.485   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.890  -1.020   0.000  0.00  0.00           C+0
HETATM   14 Cl   UNK     0       2.425  -0.544   0.000  0.00  0.00          Cl+0
CONECT    1    2                                                            
CONECT    2    1    3    8                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    2    9                                                  
CONECT    9    8   10   13                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12    9   14                                                  
CONECT   14   13                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   30    0
END

Synonyms

Value	Source
3-Chloro-4-(2-amino-3-chlorophenyl)pyrrole	ChEBI
WB 2838	ChEBI
WB-2838	ChEBI

Molecular Formula

C₁₀H₈Cl₂N₂

Average Mass

227.09

Monoisotopic Mass

226.0064537

IUPAC Name

2-chloro-6-(4-chloro-1H-pyrrol-3-yl)aniline

Traditional Name

2-chloro-6-(4-chloro-1H-pyrrol-3-yl)aniline

CAS Registry Number

Not Available

SMILES

NC1=C(Cl)C=CC=C1C1=CNC=C1Cl

InChI Identifier

InChI=1S/C10H8Cl2N2/c11-8-3-1-2-6(10(8)13)7-4-14-5-9(7)12/h1-5,14H,13H2

InChI Key

RWAXAHFFXZKMPA-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenylpyrroles. These are polycyclic aromatic compounds containing a benzene ring linked to a pyrrole ring through a CC or CN bond.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyrroles

Sub Class

Substituted pyrroles

Direct Parent

Phenylpyrroles

Alternative Parents

Substituents

3-phenylpyrrole
Aniline or substituted anilines
Chlorobenzene
Halobenzene
Aryl chloride
Aryl halide
Monocyclic benzene moiety
Benzenoid
Heteroaromatic compound
Azacycle
Hydrocarbon derivative
Organonitrogen compound
Organochloride
Organohalogen compound
Organopnictogen compound
Organic nitrogen compound
Amine
Primary amine
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

substituted aniline (CHEBI:85786 )
indole alkaloid (CHEBI:85786 )
monochlorobenzenes (CHEBI:85786 )
ring assembly (CHEBI:85786 )
pyrroles (CHEBI:85786 )
a chloroaromatic compound (CPD-12775 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.42 g/L	ALOGPS
logP	3.56	ALOGPS
logP	3.08	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	16.07	ChemAxon
pKa (Strongest Basic)	1.99	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	41.81 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	60.26 m³·mol⁻¹	ChemAxon
Polarizability	21.7 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

This table shows at most 5 pathways. For the full list of associated pathways:

See All Associated Bacterial Pathways

Name	SMPDB/PathBank	Species

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Proteobacteria	2	Human feces; Human sputum; Human urine; Human supragingival plaque; Human ; Human saliva; Human mucosa; Human subgingival plaque	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

CPD-12775

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

161174

PDB ID

Not Available

ChEBI ID

85786

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for WB2838 (MMDBc0013194)

MOL for #<Metabolite:0x00007f2ad1721e08>

3D MOL for #<Metabolite:0x00007f2ad1721e08>

3D SDF for #<Metabolite:0x00007f2ad1721e08>

3D-SDF for #<Metabolite:0x00007f2ad1721e08>

PDB for #<Metabolite:0x00007f2ad1721e08>

3D PDB for #<Metabolite:0x00007f2ad1721e08>

SMILES for #<Metabolite:0x00007f2ad1721e08>

INCHI for #<Metabolite:0x00007f2ad1721e08>

Structure for #<Metabolite:0x00007f2ad1721e08>

3D Structure for #<Metabolite:0x00007f2ad1721e08>