MiMeDB: Showing metabocard for Neobacillamide A (MMDBc0013464)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 04:46:37 UTC

Update Date

2025-10-07 16:06:08 UTC

Metabolite ID

MMDBc0013464

Metabolite Identification

Common Name

Neobacillamide A

Description

Neobacillamide A is a member of the bacillamide chemical class, which encompasses a group of bioactive metabolites produced by certain bacterial species. This compound has garnered attention for its algicidal properties, as evidenced by studies investigating the effects of naturally occurring bacillamides A-C, including neobacillamide A, and their synthetic analogues (PMID:28783131 ). It is notably produced by Bacillus atrophaeus C89, a strain isolated from the marine sponge Dysidea avara, highlighting its potential as a source of bioactive compounds (PMID:22843588 ). The unique structural features of neobacillamide A may contribute to its biological activities, making it a subject of interest for further research in both chemistry and biology, particularly in the context of natural product discovery and the development of new algicides.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152106462D          

 23 24  0  0  1  0            999 V2000
    3.1767    1.6769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1834   -0.5841    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    8.4777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801    8.0652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091    8.0652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801    7.2402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091    7.2402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    6.0027    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091    5.5902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5620    3.0428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9972    1.5907    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8478    0.1696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    6.8277    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    3.5277    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    4.3527    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4821    2.2581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091    4.7652    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.3327    0.8370    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2272    3.0428    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.0273    0.2558    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801    4.7652    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3071    2.2581    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    3.6616    2.3444    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  4  3  2  0  0  0  0
  5  3  1  0  0  0  0
  6  4  1  0  0  0  0
  7  5  2  0  0  0  0
  9  8  1  0  0  0  0
 11  1  1  6  0  0  0
 12  2  1  4  0  0  0
 13  6  2  0  0  0  0
 13  7  1  0  0  0  0
 13  8  1  0  0  0  0
 14 10  2  0  0  0  0
 15 14  1  0  0  0  0
 16 11  1  0  0  0  0
 17  9  1  4  0  0  0
 17 15  2  0  0  0  0
 18 11  1  0  0  0  0
 18 12  2  0  0  0  0
 19 14  1  0  0  0  0
 19 16  2  0  0  0  0
 20 12  1  0  0  0  0
 21 15  1  0  0  0  0
 22 10  1  0  0  0  0
 22 16  1  0  0  0  0
 11 23  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0013464

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@](C)(N=C(C)O)C1=NC(=CS1)C(O)=NCCC1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C16H19N3O2S/c1-11(18-12(2)20)16-19-14(10-22-16)15(21)17-9-8-13-6-4-3-5-7-13/h3-7,10-11H,8-9H2,1-2H3,(H,17,21)(H,18,20)/t11-/m1/s1

> <INCHI_KEY>
MEBSKLSELLTMAT-LLVKDONJSA-N

> <FORMULA>
C16H19N3O2S

> <MOLECULAR_WEIGHT>
317.41

> <EXACT_MASS>
317.119798038

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
41

> <JCHEM_AVERAGE_POLARIZABILITY>
34.3013055138224

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(1R)-1-[(1-hydroxyethylidene)amino]ethyl]-N-(2-phenylethyl)-1,3-thiazole-4-carboximidic acid

> <ALOGPS_LOGP>
2.93

> <JCHEM_LOGP>
3.0225239069534986

> <ALOGPS_LOGS>
-4.56

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.190890196987668

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.28006482204475

> <JCHEM_PKA_STRONGEST_BASIC>
4.030213043015922

> <JCHEM_POLAR_SURFACE_AREA>
78.07000000000001

> <JCHEM_REFRACTIVITY>
87.0186

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.70e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[(1R)-1-[(1-hydroxyethylidene)amino]ethyl]-N-(2-phenylethyl)-1,3-thiazole-4-carboximidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       5.930   3.130   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.809  -1.090   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.137  15.825   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.803  15.055   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.470  15.055   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.803  13.515   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      10.470  13.515   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.137  11.205   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.470  10.435   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.382   5.680   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.461   2.969   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.183   0.317   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.137  12.745   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.137   6.585   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.137   8.125   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.367   4.215   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0      10.470   8.895   0.000  0.00  0.00           N+0
HETATM   18  N   UNK     0       8.088   1.562   0.000  0.00  0.00           N+0
HETATM   19  N   UNK     0       7.891   5.680   0.000  0.00  0.00           N+0
HETATM   20  O   UNK     0       5.651   0.478   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       7.803   8.895   0.000  0.00  0.00           O+0
HETATM   22  S   UNK     0       9.907   4.215   0.000  0.00  0.00           S+0
HETATM   23  H   UNK     0       6.835   4.376   0.000  0.00  0.00           H+0
CONECT    1   11                                                            
CONECT    2   12                                                            
CONECT    3    4    5                                                       
CONECT    4    3    6                                                       
CONECT    5    3    7                                                       
CONECT    6    4   13                                                       
CONECT    7    5   13                                                       
CONECT    8    9   13                                                       
CONECT    9    8   17                                                       
CONECT   10   14   22                                                       
CONECT   11    1   16   18   23                                             
CONECT   12    2   18   20                                                  
CONECT   13    6    7    8                                                  
CONECT   14   10   15   19                                                  
CONECT   15   14   17   21                                                  
CONECT   16   11   19   22                                                  
CONECT   17    9   15                                                       
CONECT   18   11   12                                                       
CONECT   19   14   16                                                       
CONECT   20   12                                                            
CONECT   21   15                                                            
CONECT   22   10   16                                                       
CONECT   23   11                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   48    0
END

Synonyms

Not Available

Molecular Formula

C₁₆H₁₉N₃O₂S

Average Mass

317.41

Monoisotopic Mass

317.119798038

IUPAC Name

2-[(1R)-1-[(1-hydroxyethylidene)amino]ethyl]-N-(2-phenylethyl)-1,3-thiazole-4-carboximidic acid

Traditional Name

2-[(1R)-1-[(1-hydroxyethylidene)amino]ethyl]-N-(2-phenylethyl)-1,3-thiazole-4-carboximidic acid

CAS Registry Number

Not Available

SMILES

[H][C@](C)(N=C(C)O)C1=NC(=CS1)C(O)=NCCC1=CC=CC=C1

InChI Identifier

InChI=1S/C16H19N3O2S/c1-11(18-12(2)20)16-19-14(10-22-16)15(21)17-9-8-13-6-4-3-5-7-13/h3-7,10-11H,8-9H2,1-2H3,(H,17,21)(H,18,20)/t11-/m1/s1

InChI Key

MEBSKLSELLTMAT-LLVKDONJSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as thiazolecarboxamides. These are heterocyclic compounds containing a thiazole ring which bears a carboxylic acid amide group.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Azoles

Sub Class

Thiazoles

Direct Parent

Thiazolecarboxamides

Alternative Parents

Substituents

2-heteroaryl carboxamide
Thiazolecarboxamide
2,4-disubstituted 1,3-thiazole
Monocyclic benzene moiety
Benzenoid
Heteroaromatic compound
Acetamide
Carboxamide group
Secondary carboxylic acid amide
Carboxylic acid derivative
Azacycle
Organic oxide
Organooxygen compound
Organonitrogen compound
Organic nitrogen compound
Organopnictogen compound
Carbonyl group
Organic oxygen compound
Hydrocarbon derivative
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.0087 g/L	ALOGPS
logP	2.93	ALOGPS
logP	3.02	ChemAxon
logS	-4.6	ALOGPS
pKa (Strongest Acidic)	5.28	ChemAxon
pKa (Strongest Basic)	4.03	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	78.07 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	87.02 m³·mol⁻¹	ChemAxon
Polarizability	34.3 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-23	133.5
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	31.5
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-23	422.3
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	484.8
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	440.4
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-23	258.8
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	1615.1
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (void)	2025-10-23	66.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	319.9
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	338.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	153.3
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	165.7
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	155.4
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	8.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	259.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	107.7
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	328.5
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	1095.4
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	942.5

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	Neobacillamide A_TMS_1	CC(=N[C@H](C)C1=NC(C(O)=NCCC2=CC=CC=C2)=CS1)O[Si](C)(C)C	standard non polar	2025-10-23	2331.53
Gas Chromatography	Neobacillamide A_TMS_2	CC(O)=N[C@H](C)C1=NC(C(=NCCC2=CC=CC=C2)O[Si](C)(C)C)=CS1	standard non polar	2025-10-23	2364.04
Gas Chromatography	Neobacillamide A_TMS_3	CC(=N[C@H](C)C1=NC(C(=NCCC2=CC=CC=C2)O[Si](C)(C)C)=CS1)O[Si](C)(C)C	standard non polar	2025-10-23	1728.93
Gas Chromatography	Neobacillamide A_TMS_1	CC(=N[C@H](C)C1=NC(C(O)=NCCC2=CC=CC=C2)=CS1)O[Si](C)(C)C	standard polar	2025-10-23	2640.47
Gas Chromatography	Neobacillamide A_TMS_2	CC(O)=N[C@H](C)C1=NC(C(=NCCC2=CC=CC=C2)O[Si](C)(C)C)=CS1	standard polar	2025-10-23	2584.7
Gas Chromatography	Neobacillamide A_TMS_3	CC(=N[C@H](C)C1=NC(C(=NCCC2=CC=CC=C2)O[Si](C)(C)C)=CS1)O[Si](C)(C)C	standard polar	2025-10-23	2192.5

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Firmicutes	1		Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

27024119

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102422570

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Neobacillamide A (MMDBc0013464)

MOL for #<Metabolite:0x00007fc92c5b7f00>

3D MOL for #<Metabolite:0x00007fc92c5b7f00>

3D SDF for #<Metabolite:0x00007fc92c5b7f00>

3D-SDF for #<Metabolite:0x00007fc92c5b7f00>

PDB for #<Metabolite:0x00007fc92c5b7f00>

3D PDB for #<Metabolite:0x00007fc92c5b7f00>

SMILES for #<Metabolite:0x00007fc92c5b7f00>

INCHI for #<Metabolite:0x00007fc92c5b7f00>

Structure for #<Metabolite:0x00007fc92c5b7f00>

3D Structure for #<Metabolite:0x00007fc92c5b7f00>