MiMeDB: Showing metabocard for Malformin B4 (MMDBc0013506)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 04:48:29 UTC

Update Date

2025-10-07 16:06:09 UTC

Metabolite ID

MMDBc0013506

Metabolite Identification

Common Name

Malformin B4

Description

Malformin B4 is a cyclic peptide belonging to the class of metabolites. There is limited literature available on Malformin B4, indicating that research on this specific metabolite is sparse.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152106482D          

 42 43  0  0  1  0            999 V2000
    3.5483    2.8807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8226   -0.6708    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2478   -4.0842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8654   -4.4458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5791    1.5923    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9157   -2.0493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2481    2.1123    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9990   -0.6228    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3634   -0.1826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2474   -2.1710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4522   -3.8659    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7635    1.4681    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5455   -1.3120    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1870   -0.2307    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0710   -2.2190    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2434   -3.0678    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4633    0.6996    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7219   -1.2639    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7354   -0.8471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6509   -2.8058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9807   -2.6976    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6492    0.8335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5977   -0.4483    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6873   -1.6706    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8511    0.6247    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.4193   -3.1061    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.5037   -2.0596    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1525    0.2462    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5147   -0.5763    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1974   -3.4951    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4961   -3.3418    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6109    1.6576    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3697   -0.1573    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2530   -0.7310    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3010   -1.5546    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    4.0637    2.2365    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3691   -1.3601    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8274   -0.9732    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7309   -2.9707    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0346   -2.2696    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1631   -0.0688    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8983   -1.2159    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  7  1  1  0  0  0  0
  8  2  1  0  0  0  0
 11  3  1  0  0  0  0
 11  4  1  0  0  0  0
 12  5  1  6  0  0  0
 12  7  1  0  0  0  0
 13  6  1  1  0  0  0
 13  8  1  0  0  0  0
 14  9  1  0  0  0  0
 15 10  1  0  0  0  0
 16 11  1  1  0  0  0
 17 12  1  1  0  0  0
 18 13  1  6  0  0  0
 19 14  1  0  0  0  0
 20 15  1  0  0  0  0
 21 16  1  0  0  0  0
 22 17  1  0  0  0  0
 23 18  1  0  0  0  0
 24 15  1  0  0  0  0
 24 19  2  0  0  0  0
 25 14  1  0  0  0  0
 25 22  2  0  0  0  0
 26 16  1  0  0  0  0
 26 20  2  0  0  0  0
 27 18  1  0  0  0  0
 27 21  2  0  0  0  0
 28 17  1  0  0  0  0
 28 23  2  0  0  0  0
 19 29  1  4  0  0  0
 20 30  1  4  0  0  0
 21 31  1  4  0  0  0
 22 32  1  4  0  0  0
 23 33  1  4  0  0  0
 34  9  1  0  0  0  0
 35 10  1  0  0  0  0
 35 34  1  0  0  0  0
 12 36  1  1  0  0  0
 13 37  1  6  0  0  0
 14 38  1  6  0  0  0
 15 39  1  6  0  0  0
 16 40  1  1  0  0  0
 17 41  1  1  0  0  0
 18 42  1  6  0  0  0
M  END


  Mrv1652305152106482D          

 42 43  0  0  1  0            999 V2000
    3.5483    2.8807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8226   -0.6708    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2478   -4.0842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8654   -4.4458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5791    1.5923    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9157   -2.0493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2481    2.1123    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9990   -0.6228    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3634   -0.1826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2474   -2.1710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4522   -3.8659    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7635    1.4681    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5455   -1.3120    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1870   -0.2307    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0710   -2.2190    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2434   -3.0678    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4633    0.6996    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7219   -1.2639    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7354   -0.8471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6509   -2.8058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9807   -2.6976    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6492    0.8335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5977   -0.4483    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6873   -1.6706    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8511    0.6247    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.4193   -3.1061    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.5037   -2.0596    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1525    0.2462    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5147   -0.5763    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1974   -3.4951    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4961   -3.3418    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6109    1.6576    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3697   -0.1573    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2530   -0.7310    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3010   -1.5546    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    4.0637    2.2365    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3691   -1.3601    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8274   -0.9732    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7309   -2.9707    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0346   -2.2696    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1631   -0.0688    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8983   -1.2159    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  7  1  1  0  0  0  0
  8  2  1  0  0  0  0
 11  3  1  0  0  0  0
 11  4  1  0  0  0  0
 12  5  1  6  0  0  0
 12  7  1  0  0  0  0
 13  6  1  1  0  0  0
 13  8  1  0  0  0  0
 14  9  1  0  0  0  0
 15 10  1  0  0  0  0
 16 11  1  1  0  0  0
 17 12  1  1  0  0  0
 18 13  1  6  0  0  0
 19 14  1  0  0  0  0
 20 15  1  0  0  0  0
 21 16  1  0  0  0  0
 22 17  1  0  0  0  0
 23 18  1  0  0  0  0
 24 15  1  0  0  0  0
 24 19  2  0  0  0  0
 25 14  1  0  0  0  0
 25 22  2  0  0  0  0
 26 16  1  0  0  0  0
 26 20  2  0  0  0  0
 27 18  1  0  0  0  0
 27 21  2  0  0  0  0
 28 17  1  0  0  0  0
 28 23  2  0  0  0  0
 19 29  1  4  0  0  0
 20 30  1  4  0  0  0
 21 31  1  4  0  0  0
 22 32  1  4  0  0  0
 23 33  1  4  0  0  0
 34  9  1  0  0  0  0
 35 10  1  0  0  0  0
 35 34  1  0  0  0  0
 12 36  1  1  0  0  0
 13 37  1  6  0  0  0
 14 38  1  6  0  0  0
 15 39  1  6  0  0  0
 16 40  1  1  0  0  0
 17 41  1  1  0  0  0
 18 42  1  6  0  0  0
M  END
> <DATABASE_ID>
MMDBc0013506

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@](C)(CC)[C@]1([H])N=C(O)[C@]([H])(N=C(O)[C@@]([H])(N=C(O)[C@@]2([H])CSSC[C@@]([H])(N=C1O)C(O)=N2)C(C)C)[C@]([H])(C)CC

> <INCHI_IDENTIFIER>
InChI=1S/C23H39N5O5S2/c1-7-12(5)17-22(32)25-14-9-34-35-10-15(24-19(14)29)20(30)26-16(11(3)4)21(31)27-18(13(6)8-2)23(33)28-17/h11-18H,7-10H2,1-6H3,(H,24,29)(H,25,32)(H,26,30)(H,27,31)(H,28,33)/t12-,13+,14+,15+,16-,17-,18+/m0/s1

> <INCHI_KEY>
PIXYPRXKMCTYQV-RJBILPHGSA-N

> <FORMULA>
C23H39N5O5S2

> <MOLECULAR_WEIGHT>
529.72

> <EXACT_MASS>
529.239261724

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
74

> <JCHEM_AVERAGE_POLARIZABILITY>
55.0701035194063

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,4S,7R,10S,13S)-7-[(2R)-butan-2-yl]-4-[(2S)-butan-2-yl]-10-(propan-2-yl)-15,16-dithia-2,5,8,11,19-pentaazabicyclo[11.4.2]nonadeca-2,5,8,11,18-pentaene-3,6,9,12,18-pentol

> <ALOGPS_LOGP>
2.60

> <JCHEM_LOGP>
0.005563501819209803

> <ALOGPS_LOGS>
-3.82

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
2.228091605964535

> <JCHEM_PKA_STRONGEST_ACIDIC>
-8.864184874335283

> <JCHEM_PKA_STRONGEST_BASIC>
14.617004831264536

> <JCHEM_POLAR_SURFACE_AREA>
162.95

> <JCHEM_REFRACTIVITY>
139.1615

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.96e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4S,7R,10S,13S)-7-[(2R)-butan-2-yl]-4-[(2S)-butan-2-yl]-10-isopropyl-15,16-dithia-2,5,8,11,19-pentaazabicyclo[11.4.2]nonadeca-2,5,8,11,18-pentaene-3,6,9,12,18-pentol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       6.624   5.377   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      12.735  -1.252   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.929  -7.624   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.349  -8.299   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.548   2.972   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      11.043  -3.825   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.063   3.943   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      11.198  -1.163   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.678  -0.341   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.462  -4.052   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.444  -7.216   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.025   2.740   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.352  -2.449   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.216  -0.431   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.999  -4.142   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.054  -5.727   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.465   1.306   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       8.814  -2.359   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.239  -1.581   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.082  -5.238   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       7.431  -5.036   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.945   1.556   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       8.582  -0.837   0.000  0.00  0.00           C+0
HETATM   24  N   UNK     0       3.150  -3.119   0.000  0.00  0.00           N+0
HETATM   25  N   UNK     0       3.455   1.166   0.000  0.00  0.00           N+0
HETATM   26  N   UNK     0       4.516  -5.798   0.000  0.00  0.00           N+0
HETATM   27  N   UNK     0       8.407  -3.844   0.000  0.00  0.00           N+0
HETATM   28  N   UNK     0       7.751   0.460   0.000  0.00  0.00           N+0
HETATM   29  O   UNK     0       4.694  -1.076   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0       2.235  -6.524   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0       8.393  -6.238   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0       4.874   3.094   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0      10.023  -0.294   0.000  0.00  0.00           O+0
HETATM   34  S   UNK     0      -0.472  -1.365   0.000  0.00  0.00           S+0
HETATM   35  S   UNK     0      -0.562  -2.902   0.000  0.00  0.00           S+0
HETATM   36  H   UNK     0       7.586   4.175   0.000  0.00  0.00           H+0
HETATM   37  H   UNK     0      11.889  -2.539   0.000  0.00  0.00           H+0
HETATM   38  H   UNK     0       1.545  -1.817   0.000  0.00  0.00           H+0
HETATM   39  H   UNK     0       1.364  -5.545   0.000  0.00  0.00           H+0
HETATM   40  H   UNK     0       5.665  -4.237   0.000  0.00  0.00           H+0
HETATM   41  H   UNK     0       5.904  -0.128   0.000  0.00  0.00           H+0
HETATM   42  H   UNK     0       7.277  -2.270   0.000  0.00  0.00           H+0
CONECT    1    7                                                            
CONECT    2    8                                                            
CONECT    3   11                                                            
CONECT    4   11                                                            
CONECT    5   12                                                            
CONECT    6   13                                                            
CONECT    7    1   12                                                       
CONECT    8    2   13                                                       
CONECT    9   14   34                                                       
CONECT   10   15   35                                                       
CONECT   11    3    4   16                                                  
CONECT   12    5    7   17   36                                             
CONECT   13    6    8   18   37                                             
CONECT   14    9   19   25   38                                             
CONECT   15   10   20   24   39                                             
CONECT   16   11   21   26   40                                             
CONECT   17   12   22   28   41                                             
CONECT   18   13   23   27   42                                             
CONECT   19   14   24   29                                                  
CONECT   20   15   26   30                                                  
CONECT   21   16   27   31                                                  
CONECT   22   17   25   32                                                  
CONECT   23   18   28   33                                                  
CONECT   24   15   19                                                       
CONECT   25   14   22                                                       
CONECT   26   16   20                                                       
CONECT   27   18   21                                                       
CONECT   28   17   23                                                       
CONECT   29   19                                                            
CONECT   30   20                                                            
CONECT   31   21                                                            
CONECT   32   22                                                            
CONECT   33   23                                                            
CONECT   34    9   35                                                       
CONECT   35   10   34                                                       
CONECT   36   12                                                            
CONECT   37   13                                                            
CONECT   38   14                                                            
CONECT   39   15                                                            
CONECT   40   16                                                            
CONECT   41   17                                                            
CONECT   42   18                                                            
MASTER        0    0    0    0    0    0    0    0   42    0   86    0
END

Synonyms

Not Available

Molecular Formula

C₂₃H₃₉N₅O₅S₂

Average Mass

529.72

Monoisotopic Mass

529.239261724

IUPAC Name

(1S,4S,7R,10S,13S)-7-[(2R)-butan-2-yl]-4-[(2S)-butan-2-yl]-10-(propan-2-yl)-15,16-dithia-2,5,8,11,19-pentaazabicyclo[11.4.2]nonadeca-2,5,8,11,18-pentaene-3,6,9,12,18-pentol

Traditional Name

(1S,4S,7R,10S,13S)-7-[(2R)-butan-2-yl]-4-[(2S)-butan-2-yl]-10-isopropyl-15,16-dithia-2,5,8,11,19-pentaazabicyclo[11.4.2]nonadeca-2,5,8,11,18-pentaene-3,6,9,12,18-pentol

CAS Registry Number

Not Available

SMILES

[H][C@](C)(CC)[C@]1([H])N=C(O)[C@]([H])(N=C(O)[C@@]([H])(N=C(O)[C@@]2([H])CSSC[C@@]([H])(N=C1O)C(O)=N2)C(C)C)[C@]([H])(C)CC

InChI Identifier

InChI=1S/C23H39N5O5S2/c1-7-12(5)17-22(32)25-14-9-34-35-10-15(24-19(14)29)20(30)26-16(11(3)4)21(31)27-18(13(6)8-2)23(33)28-17/h11-18H,7-10H2,1-6H3,(H,24,29)(H,25,32)(H,26,30)(H,27,31)(H,28,33)/t12-,13+,14+,15+,16-,17-,18+/m0/s1

InChI Key

PIXYPRXKMCTYQV-RJBILPHGSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Cyclic peptides

Alternative Parents

Substituents

Cyclic alpha peptide
Cyclic carboximidic acid
Organic disulfide
Azacycle
Organoheterocyclic compound
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Polyol
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.08 g/L	ALOGPS
logP	2.6	ALOGPS
logP	0.0056	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	-8.9	ChemAxon
pKa (Strongest Basic)	14.62	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	162.95 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	139.16 m³·mol⁻¹	ChemAxon
Polarizability	55.07 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_5) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-10	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-23	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

62490280

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

38350263

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

PIXYPRXKMCTYQV-RJBILPHGSA-N

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Malformin B4 (MMDBc0013506)

MOL for #<Metabolite:0x00007f8dc454e378>

3D MOL for #<Metabolite:0x00007f8dc454e378>

3D SDF for #<Metabolite:0x00007f8dc454e378>

3D-SDF for #<Metabolite:0x00007f8dc454e378>

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3D PDB for #<Metabolite:0x00007f8dc454e378>

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INCHI for #<Metabolite:0x00007f8dc454e378>

Structure for #<Metabolite:0x00007f8dc454e378>

3D Structure for #<Metabolite:0x00007f8dc454e378>