MiMeDB: Showing metabocard for Yanuthone D (MMDBc0014027)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 05:10:34 UTC

Update Date

2025-10-07 16:06:13 UTC

Metabolite ID

MMDBc0014027

Metabolite Identification

Common Name

Yanuthone D

Description

Yanuthone D is a meroterpenoid belonging to the class of polyketides. It is a metabolite produced by the fungus Aspergillus niger, which has garnered attention for its biosynthetic pathways and potential applications in medicine. The synthesis of yanuthone D involves a complex genetic cluster that includes ten genes, notably yanA and yanI, which encode a 6-MSA polyketide synthase and a novel O-mevalon transferase, respectively (PMID:24684908 ). This compound has been identified alongside other metabolites such as burnettramic acid A and choline, suggesting a diverse metabolic profile within the organism (PMID:40082747 ). Research has also highlighted additional secondary metabolite clusters that may be responsible for the production of yanuthone D and related compounds, indicating its significance in the metabolic landscape of Aspergillus niger (PMID:26729047 ). The molecular characterization of yanuthone D's biosynthesis emphasizes its potential role as an antibiotic, further underscoring the importance of understanding its chemical and biological properties (PMID:24684908 ).

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152107102D          

 39 40  0  0  1  0            999 V2000
    1.4289   -7.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1914   -7.0342    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1914   -4.1763    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1914   -1.3184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0177    2.7770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164   -5.6052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164   -2.7474    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -6.3197    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.8908    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -3.4618    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.0329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164    0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164   -7.0342    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164   -4.1763    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164   -1.3184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.4302    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8427    1.3480    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2539   -3.4618    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9312   -1.2585    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164    2.3645    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  6  1  0  0  0  0
  9  6  1  0  0  0  0
 10  7  1  0  0  0  0
 11  7  1  0  0  0  0
 13 12  1  0  0  0  0
 18  1  1  0  0  0  0
 18  2  1  0  0  0  0
 18  8  2  0  0  0  0
 19  3  1  0  0  0  0
 19  9  1  0  0  0  0
 19 10  2  0  0  0  0
 20  4  1  0  0  0  0
 20 11  1  0  0  0  0
 20 12  2  0  0  0  0
 21 14  2  0  0  0  0
 21 17  1  0  0  0  0
 22 14  1  0  0  0  0
 23 15  1  0  0  0  0
 24 16  1  0  0  0  0
 25 21  1  0  0  0  0
 26 25  1  0  0  0  0
 27  5  1  0  0  0  0
 27 15  1  0  0  0  0
 27 16  1  0  0  0  0
 28 13  1  0  0  0  0
 28 22  1  0  0  0  0
 28 26  1  0  0  0  0
 29 22  2  0  0  0  0
 30 23  2  0  0  0  0
 31 23  1  0  0  0  0
 32 24  2  0  0  0  0
 33 25  2  0  0  0  0
 34 27  1  0  0  0  0
 35 17  1  0  0  0  0
 35 24  1  0  0  0  0
 36 26  1  0  0  0  0
 36 28  1  0  0  0  0
 37 10  1  0  0  0  0
 38 12  1  0  0  0  0
 26 39  1  1  0  0  0
M  END


  Mrv1652305152107102D          

 39 40  0  0  1  0            999 V2000
    1.4289   -7.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1914   -7.0342    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1914   -4.1763    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1914   -1.3184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0177    2.7770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164   -5.6052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164   -2.7474    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -6.3197    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.8908    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -3.4618    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.0329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164    0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164   -7.0342    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164   -4.1763    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164   -1.3184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.4302    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8427    1.3480    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2539   -3.4618    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9312   -1.2585    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164    2.3645    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  6  1  0  0  0  0
  9  6  1  0  0  0  0
 10  7  1  0  0  0  0
 11  7  1  0  0  0  0
 13 12  1  0  0  0  0
 18  1  1  0  0  0  0
 18  2  1  0  0  0  0
 18  8  2  0  0  0  0
 19  3  1  0  0  0  0
 19  9  1  0  0  0  0
 19 10  2  0  0  0  0
 20  4  1  0  0  0  0
 20 11  1  0  0  0  0
 20 12  2  0  0  0  0
 21 14  2  0  0  0  0
 21 17  1  0  0  0  0
 22 14  1  0  0  0  0
 23 15  1  0  0  0  0
 24 16  1  0  0  0  0
 25 21  1  0  0  0  0
 26 25  1  0  0  0  0
 27  5  1  0  0  0  0
 27 15  1  0  0  0  0
 27 16  1  0  0  0  0
 28 13  1  0  0  0  0
 28 22  1  0  0  0  0
 28 26  1  0  0  0  0
 29 22  2  0  0  0  0
 30 23  2  0  0  0  0
 31 23  1  0  0  0  0
 32 24  2  0  0  0  0
 33 25  2  0  0  0  0
 34 27  1  0  0  0  0
 35 17  1  0  0  0  0
 35 24  1  0  0  0  0
 36 26  1  0  0  0  0
 36 28  1  0  0  0  0
 37 10  1  0  0  0  0
 38 12  1  0  0  0  0
 26 39  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0014027

> <DATABASE_NAME>
MIME

> <SMILES>
[H]\C(CC\C(C)=C(/[H])CC12O[C@]1([H])C(=O)C(COC(=O)CC(C)(O)CC(O)=O)=CC2=O)=C(\C)CCC=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C28H38O8/c1-18(2)8-6-9-19(3)10-7-11-20(4)12-13-28-22(29)14-21(25(33)26(28)36-28)17-35-24(32)16-27(5,34)15-23(30)31/h8,10,12,14,26,34H,6-7,9,11,13,15-17H2,1-5H3,(H,30,31)/b19-10+,20-12+/t26-,27?,28?/m1/s1

> <INCHI_KEY>
NIBXHVDVUJEQPO-OFWAVEGMSA-N

> <FORMULA>
C28H38O8

> <MOLECULAR_WEIGHT>
502.604

> <EXACT_MASS>
502.256668184

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
74

> <JCHEM_AVERAGE_POLARIZABILITY>
54.748889370985225

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-{[(1S)-2,5-dioxo-6-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]-7-oxabicyclo[4.1.0]hept-3-en-3-yl]methoxy}-3-hydroxy-3-methyl-5-oxopentanoic acid

> <ALOGPS_LOGP>
3.54

> <JCHEM_LOGP>
4.474234818666666

> <ALOGPS_LOGS>
-5.29

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.802693181989241

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.893482050773206

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0083987734509385

> <JCHEM_POLAR_SURFACE_AREA>
130.5

> <JCHEM_REFRACTIVITY>
137.3455

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.55e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-{[(1S)-2,5-dioxo-6-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]-7-oxabicyclo[4.1.0]hept-3-en-3-yl]methoxy}-3-hydroxy-3-methyl-5-oxopentanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       2.667 -14.464   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.357 -13.130   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.357  -7.796   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.357  -2.461   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      11.233   5.184   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.897 -10.463   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.897  -5.128   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.667 -11.797   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667  -9.129   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.667  -6.462   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.667  -3.795   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.667  -1.127   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.897   0.206   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      13.337   4.620   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.669   3.080   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.668   3.850   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.897 -13.130   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.897  -7.796   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.897  -2.461   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.335   3.080   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.001   0.770   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      14.670   3.850   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       9.336   3.850   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.001   3.850   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.667   3.080   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      12.003   3.850   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       4.001  -0.770   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      16.004   4.620   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      14.670   2.310   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0       9.336   5.390   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0       4.001   5.390   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0      12.773   2.516   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0       8.002   3.080   0.000  0.00  0.00           O+0
HETATM   36  O   UNK     0       1.334   2.310   0.000  0.00  0.00           O+0
HETATM   37  H   UNK     0       4.207  -6.462   0.000  0.00  0.00           H+0
HETATM   38  H   UNK     0       3.605  -2.349   0.000  0.00  0.00           H+0
HETATM   39  H   UNK     0       1.897   4.414   0.000  0.00  0.00           H+0
CONECT    1   18                                                            
CONECT    2   18                                                            
CONECT    3   19                                                            
CONECT    4   20                                                            
CONECT    5   27                                                            
CONECT    6    8    9                                                       
CONECT    7   10   11                                                       
CONECT    8    6   18                                                       
CONECT    9    6   19                                                       
CONECT   10    7   19   37                                                  
CONECT   11    7   20                                                       
CONECT   12   13   20   38                                                  
CONECT   13   12   28                                                       
CONECT   14   21   22                                                       
CONECT   15   23   27                                                       
CONECT   16   24   27                                                       
CONECT   17   21   35                                                       
CONECT   18    1    2    8                                                  
CONECT   19    3    9   10                                                  
CONECT   20    4   11   12                                                  
CONECT   21   14   17   25                                                  
CONECT   22   14   28   29                                                  
CONECT   23   15   30   31                                                  
CONECT   24   16   32   35                                                  
CONECT   25   21   26   33                                                  
CONECT   26   25   28   36   39                                             
CONECT   27    5   15   16   34                                             
CONECT   28   13   22   26   36                                             
CONECT   29   22                                                            
CONECT   30   23                                                            
CONECT   31   23                                                            
CONECT   32   24                                                            
CONECT   33   25                                                            
CONECT   34   27                                                            
CONECT   35   17   24                                                       
CONECT   36   26   28                                                       
CONECT   37   10                                                            
CONECT   38   12                                                            
CONECT   39   26                                                            
MASTER        0    0    0    0    0    0    0    0   39    0   80    0
END

Synonyms

Not Available

Molecular Formula

C₂₈H₃₈O₈

Average Mass

502.604

Monoisotopic Mass

502.256668184

IUPAC Name

5-{[(1S)-2,5-dioxo-6-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]-7-oxabicyclo[4.1.0]hept-3-en-3-yl]methoxy}-3-hydroxy-3-methyl-5-oxopentanoic acid

Traditional Name

5-{[(1S)-2,5-dioxo-6-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]-7-oxabicyclo[4.1.0]hept-3-en-3-yl]methoxy}-3-hydroxy-3-methyl-5-oxopentanoic acid

CAS Registry Number

Not Available

SMILES

[H]\C(CC\C(C)=C(/[H])CC12O[C@]1([H])C(=O)C(COC(=O)CC(C)(O)CC(O)=O)=CC2=O)=C(\C)CCC=C(C)C

InChI Identifier

InChI=1S/C28H38O8/c1-18(2)8-6-9-19(3)10-7-11-20(4)12-13-28-22(29)14-21(25(33)26(28)36-28)17-35-24(32)16-27(5,34)15-23(30)31/h8,10,12,14,26,34H,6-7,9,11,13,15-17H2,1-5H3,(H,30,31)/b19-10+,20-12+/t26-,27?,28?/m1/s1

InChI Key

NIBXHVDVUJEQPO-OFWAVEGMSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Diterpenoids

Alternative Parents

Substituents

Diterpenoid
Cyclohexenone
Methyl-branched fatty acid
Short-chain hydroxy acid
Hydroxy fatty acid
Heterocyclic fatty acid
Fatty acid ester
Branched fatty acid
Fatty acyl
Dicarboxylic acid or derivatives
Tertiary alcohol
Ketone
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Ether
Oxirane
Dialkyl ether
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.0026 g/L	ALOGPS
logP	3.54	ALOGPS
logP	4.47	ChemAxon
logS	-5.3	ALOGPS
pKa (Strongest Acidic)	3.89	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	130.5 Å²	ChemAxon
Rotatable Bond Count	15	ChemAxon
Refractivity	137.35 m³·mol⁻¹	ChemAxon
Polarizability	54.75 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-09	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-18	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (void)	2025-10-23	19.3
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (void)	2025-10-23	41.4
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-23	577.5
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	698.0
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	705.7
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-23	168.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	3398.6
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (void)	2025-10-23	84.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	356.7
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	564.5
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (void)	2025-10-23	189.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	155.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	216.4
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (void)	2025-10-23	8.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	204.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	92.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	479.9
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	1432.1
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	1276.6

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	Yanuthone D_TMS_1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CC12O[C@@H]1C(=O)C(COC(=O)CC(C)(CC(=O)O)O[Si](C)(C)C)=CC2=O	standard non polar	2025-10-23	1413.7
Gas Chromatography	Yanuthone D_TMS_2	CC(C)=CCC/C(C)=C/CC/C(C)=C/CC12O[C@@H]1C(=O)C(COC(=O)CC(C)(O)CC(=O)O[Si](C)(C)C)=CC2=O	standard non polar	2025-10-23	1521.05
Gas Chromatography	Yanuthone D_TMS_3	CC(C)=CCC/C(C)=C/CC/C(C)=C/CC12OC1=C(O[Si](C)(C)C)C(COC(=O)CC(C)(O)CC(=O)O)=CC2=O	standard non polar	2025-10-23	1942.5
Gas Chromatography	Yanuthone D_TMS_4	CC(C)=CCC/C(C)=C/CC/C(C)=C/CC12O[C@@H]1C(=O)C(COC(=O)CC(C)(CC(=O)O[Si](C)(C)C)O[Si](C)(C)C)=CC2=O	standard non polar	2025-10-23	2200.38
Gas Chromatography	Yanuthone D_TMS_5	CC(C)=CCC/C(C)=C/CC/C(C)=C/CC12OC1=C(O[Si](C)(C)C)C(COC(=O)CC(C)(CC(=O)O)O[Si](C)(C)C)=CC2=O	standard non polar	2025-10-23	1435.54
Gas Chromatography	Yanuthone D_TMS_6	CC(C)=CCC/C(C)=C/CC/C(C)=C/CC12OC1=C(O[Si](C)(C)C)C(COC(=O)CC(C)(O)CC(=O)O[Si](C)(C)C)=CC2=O	standard non polar	2025-10-23	1288.81
Gas Chromatography	Yanuthone D_TMS_7	CC(C)=CCC/C(C)=C/CC/C(C)=C/CC12OC1=C(O[Si](C)(C)C)C(COC(=O)CC(C)(CC(=O)O[Si](C)(C)C)O[Si](C)(C)C)=CC2=O	standard non polar	2025-10-23	1341.84
Gas Chromatography	Yanuthone D_TMS_1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CC12O[C@@H]1C(=O)C(COC(=O)CC(C)(CC(=O)O)O[Si](C)(C)C)=CC2=O	standard polar	2025-10-23	1506.1
Gas Chromatography	Yanuthone D_TMS_2	CC(C)=CCC/C(C)=C/CC/C(C)=C/CC12O[C@@H]1C(=O)C(COC(=O)CC(C)(O)CC(=O)O[Si](C)(C)C)=CC2=O	standard polar	2025-10-23	2757.86
Gas Chromatography	Yanuthone D_TMS_3	CC(C)=CCC/C(C)=C/CC/C(C)=C/CC12OC1=C(O[Si](C)(C)C)C(COC(=O)CC(C)(O)CC(=O)O)=CC2=O	standard polar	2025-10-23	2347.21
Gas Chromatography	Yanuthone D_TMS_4	CC(C)=CCC/C(C)=C/CC/C(C)=C/CC12O[C@@H]1C(=O)C(COC(=O)CC(C)(CC(=O)O[Si](C)(C)C)O[Si](C)(C)C)=CC2=O	standard polar	2025-10-23	3444.83
Gas Chromatography	Yanuthone D_TMS_5	CC(C)=CCC/C(C)=C/CC/C(C)=C/CC12OC1=C(O[Si](C)(C)C)C(COC(=O)CC(C)(CC(=O)O)O[Si](C)(C)C)=CC2=O	standard polar	2025-10-23	2103.29
Gas Chromatography	Yanuthone D_TMS_6	CC(C)=CCC/C(C)=C/CC/C(C)=C/CC12OC1=C(O[Si](C)(C)C)C(COC(=O)CC(C)(O)CC(=O)O[Si](C)(C)C)=CC2=O	standard polar	2025-10-23	1641.06
Gas Chromatography	Yanuthone D_TMS_7	CC(C)=CCC/C(C)=C/CC/C(C)=C/CC12OC1=C(O[Si](C)(C)C)C(COC(=O)CC(C)(CC(=O)O[Si](C)(C)C)O[Si](C)(C)C)=CC2=O	standard polar	2025-10-23	1239.06

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78440342

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139586902

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Yanuthone D (MMDBc0014027)

MOL for #<Metabolite:0x00007f9af032f7c0>

3D MOL for #<Metabolite:0x00007f9af032f7c0>

3D SDF for #<Metabolite:0x00007f9af032f7c0>

3D-SDF for #<Metabolite:0x00007f9af032f7c0>

PDB for #<Metabolite:0x00007f9af032f7c0>

3D PDB for #<Metabolite:0x00007f9af032f7c0>

SMILES for #<Metabolite:0x00007f9af032f7c0>

INCHI for #<Metabolite:0x00007f9af032f7c0>

Structure for #<Metabolite:0x00007f9af032f7c0>

3D Structure for #<Metabolite:0x00007f9af032f7c0>