MiMeDB: Showing metabocard for Ergocladinine (MMDBc0015808)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 06:34:12 UTC

Update Date

2025-10-07 16:06:28 UTC

Metabolite ID

MMDBc0015808

Metabolite Identification

Common Name

Ergocladinine

Description

Ergocladinine is a metabolite belonging to the class of alkaloids. There is limited literature available on this compound, indicating that further research may be necessary to fully understand its properties and potential biological effects.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152108342D          

 46 52  0  0  1  0            999 V2000
    5.9874    2.6586    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8314    1.8187    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7891   -2.7000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7925    2.4389    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4050    2.2994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5771    2.1840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1794    1.8869    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5846    2.3856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7344   -0.7889    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5766    1.4924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3475   -1.3410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8500   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3509   -0.2549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6519    1.9049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1355    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7486    1.3770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3509    1.0799    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9059    0.0180    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5645   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2490    1.6320    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1355    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7079    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6906    0.2730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4724    0.4838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1368    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.4644    1.3770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1340    0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.4223    0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.8621    1.0799    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.2929    0.5701    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4529    2.0221    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3037   -0.2791    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0599   -0.2306    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5506    2.1975    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7499    1.7895    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1760   -2.1479    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    4.7079    0.4125    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5190   -0.5340    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645   -0.8250    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0775    0.8250    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  7  5  2  0  0  0  0
  8  5  1  0  0  0  0
  9  6  1  0  0  0  0
 11  6  1  0  0  0  0
 12 10  1  0  0  0  0
 17  1  1  0  0  0  0
 17  2  1  0  0  0  0
 18 14  1  0  0  0  0
 18 15  2  0  0  0  0
 19 13  1  0  0  0  0
 19 16  1  0  0  0  0
 20  7  1  0  0  0  0
 21 13  2  0  0  0  0
 21 20  1  0  0  0  0
 22  8  2  0  0  0  0
 23 10  1  6  0  0  0
 24 14  1  0  0  0  0
 24 21  1  0  0  0  0
 25  9  1  0  0  0  0
 26 18  1  0  0  0  0
 26 20  2  0  0  0  0
 26 22  1  0  0  0  0
 27 19  1  0  0  0  0
 28 23  1  0  0  0  0
 30 17  1  1  0  0  0
 30 29  1  0  0  0  0
 31 25  1  0  0  0  0
 32 15  1  0  0  0  0
 32 22  1  0  0  0  0
 33 27  2  0  0  0  0
 30 33  1  6  0  0  0
 34  3  1  0  0  0  0
 34 16  1  0  0  0  0
 34 24  1  0  0  0  0
 35 11  1  0  0  0  0
 35 25  1  0  0  0  0
 35 28  1  0  0  0  0
 36 23  1  0  0  0  0
 36 29  1  0  0  0  0
 36 31  1  0  0  0  0
 27 37  1  4  0  0  0
 38 28  2  0  0  0  0
 39 29  2  0  0  0  0
 40 31  1  0  0  0  0
 41 30  1  0  0  0  0
 41 31  1  0  0  0  0
 42  4  1  0  0  0  0
 42 12  1  0  0  0  0
 43 19  1  0  0  0  0
 23 44  1  1  0  0  0
 45 24  1  0  0  0  0
 25 46  1  1  0  0  0
M  END


  Mrv1652305152108342D          

 46 52  0  0  1  0            999 V2000
    5.9874    2.6586    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8314    1.8187    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7891   -2.7000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7925    2.4389    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4050    2.2994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5771    2.1840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1794    1.8869    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5846    2.3856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7344   -0.7889    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5766    1.4924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3475   -1.3410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8500   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3509   -0.2549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6519    1.9049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1355    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7486    1.3770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3509    1.0799    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9059    0.0180    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5645   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2490    1.6320    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1355    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7079    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6906    0.2730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4724    0.4838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1368    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.4644    1.3770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1340    0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.4223    0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.8621    1.0799    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.2929    0.5701    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4529    2.0221    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3037   -0.2791    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0599   -0.2306    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5506    2.1975    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7499    1.7895    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1760   -2.1479    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    4.7079    0.4125    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5190   -0.5340    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645   -0.8250    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0775    0.8250    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  7  5  2  0  0  0  0
  8  5  1  0  0  0  0
  9  6  1  0  0  0  0
 11  6  1  0  0  0  0
 12 10  1  0  0  0  0
 17  1  1  0  0  0  0
 17  2  1  0  0  0  0
 18 14  1  0  0  0  0
 18 15  2  0  0  0  0
 19 13  1  0  0  0  0
 19 16  1  0  0  0  0
 20  7  1  0  0  0  0
 21 13  2  0  0  0  0
 21 20  1  0  0  0  0
 22  8  2  0  0  0  0
 23 10  1  6  0  0  0
 24 14  1  0  0  0  0
 24 21  1  0  0  0  0
 25  9  1  0  0  0  0
 26 18  1  0  0  0  0
 26 20  2  0  0  0  0
 26 22  1  0  0  0  0
 27 19  1  0  0  0  0
 28 23  1  0  0  0  0
 30 17  1  1  0  0  0
 30 29  1  0  0  0  0
 31 25  1  0  0  0  0
 32 15  1  0  0  0  0
 32 22  1  0  0  0  0
 33 27  2  0  0  0  0
 30 33  1  6  0  0  0
 34  3  1  0  0  0  0
 34 16  1  0  0  0  0
 34 24  1  0  0  0  0
 35 11  1  0  0  0  0
 35 25  1  0  0  0  0
 35 28  1  0  0  0  0
 36 23  1  0  0  0  0
 36 29  1  0  0  0  0
 36 31  1  0  0  0  0
 27 37  1  4  0  0  0
 38 28  2  0  0  0  0
 39 29  2  0  0  0  0
 40 31  1  0  0  0  0
 41 30  1  0  0  0  0
 41 31  1  0  0  0  0
 42  4  1  0  0  0  0
 42 12  1  0  0  0  0
 43 19  1  0  0  0  0
 23 44  1  1  0  0  0
 45 24  1  0  0  0  0
 25 46  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0015808

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@]12CCCN1C(=O)[C@]([H])(CCSC)N1C(=O)[C@@](OC21O)(N=C(O)C1([H])CN(C)C2([H])CC3=CNC4=CC=CC(=C34)C2=C1)C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C31H39N5O5S/c1-17(2)30(29(39)36-23(10-12-42-4)28(38)35-11-6-9-25(35)31(36,40)41-30)33-27(37)19-13-21-20-7-5-8-22-26(20)18(15-32-22)14-24(21)34(3)16-19/h5,7-8,13,15,17,19,23-25,32,40H,6,9-12,14,16H2,1-4H3,(H,33,37)/t19?,23-,24?,25-,30+,31?/m0/s1

> <INCHI_KEY>
KRNFNSQJJMDXAQ-AZIXNVGKSA-N

> <FORMULA>
C31H39N5O5S

> <MOLECULAR_WEIGHT>
593.74

> <EXACT_MASS>
593.26719055

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
81

> <JCHEM_AVERAGE_POLARIZABILITY>
64.62972646514915

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
N-[(1S,4R,7S)-2-hydroxy-7-[2-(methylsulfanyl)ethyl]-5,8-dioxo-4-(propan-2-yl)-3-oxa-6,9-diazatricyclo[7.3.0.0^{2,6}]dodecan-4-yl]-6-methyl-6,11-diazatetracyclo[7.6.1.0^{2,7}.0^{12,16}]hexadeca-1(16),2,9,12,14-pentaene-4-carboximidic acid

> <ALOGPS_LOGP>
2.40

> <JCHEM_LOGP>
1.0207823057059071

> <ALOGPS_LOGS>
-3.83

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
9.718383062543154

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.386916900382773

> <JCHEM_PKA_STRONGEST_BASIC>
8.084258458076823

> <JCHEM_POLAR_SURFACE_AREA>
121.70000000000002

> <JCHEM_REFRACTIVITY>
162.0444

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
8.70e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
N-[(1S,4R,7S)-2-hydroxy-4-isopropyl-7-[2-(methylsulfanyl)ethyl]-5,8-dioxo-3-oxa-6,9-diazatricyclo[7.3.0.0^{2,6}]dodecan-4-yl]-6-methyl-6,11-diazatetracyclo[7.6.1.0^{2,7}.0^{12,16}]hexadeca-1(16),2,9,12,14-pentaene-4-carboximidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0      11.177   4.963   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.019   3.395   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.121  -2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      16.406  -5.040   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.479   4.553   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      17.556   4.292   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.944   4.077   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.335   3.522   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      16.025   4.453   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      14.438  -1.473   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      17.876   2.786   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      15.582  -2.503   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.121   2.310   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.453  -0.770   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.655  -0.476   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.454   0.000   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      10.550   3.556   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.120   0.000   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.454   1.540   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.264   2.570   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.787   1.540   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.655   2.016   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      14.758   0.034   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.787  -0.000   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      15.398   3.046   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.120   1.540   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       8.788   2.310   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      16.222   0.510   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      12.082   0.903   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      11.455   2.310   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      13.934   2.570   0.000  0.00  0.00           C+0
HETATM   32  N   UNK     0      -0.250   0.770   0.000  0.00  0.00           N+0
HETATM   33  N   UNK     0      10.122   1.540   0.000  0.00  0.00           N+0
HETATM   34  N   UNK     0       6.121  -0.770   0.000  0.00  0.00           N+0
HETATM   35  N   UNK     0      16.543   2.016   0.000  0.00  0.00           N+0
HETATM   36  N   UNK     0      13.613   1.064   0.000  0.00  0.00           N+0
HETATM   37  O   UNK     0       8.312   3.775   0.000  0.00  0.00           O+0
HETATM   38  O   UNK     0      17.367  -0.521   0.000  0.00  0.00           O+0
HETATM   39  O   UNK     0      11.312  -0.431   0.000  0.00  0.00           O+0
HETATM   40  O   UNK     0      14.094   4.102   0.000  0.00  0.00           O+0
HETATM   41  O   UNK     0      12.600   3.340   0.000  0.00  0.00           O+0
HETATM   42  S   UNK     0      15.262  -4.010   0.000  0.00  0.00           S+0
HETATM   43  H   UNK     0       8.788   0.770   0.000  0.00  0.00           H+0
HETATM   44  H   UNK     0      15.902  -0.997   0.000  0.00  0.00           H+0
HETATM   45  H   UNK     0       4.787  -1.540   0.000  0.00  0.00           H+0
HETATM   46  H   UNK     0      15.078   1.540   0.000  0.00  0.00           H+0
CONECT    1   17                                                            
CONECT    2   17                                                            
CONECT    3   34                                                            
CONECT    4   42                                                            
CONECT    5    7    8                                                       
CONECT    6    9   11                                                       
CONECT    7    5   20                                                       
CONECT    8    5   22                                                       
CONECT    9    6   25                                                       
CONECT   10   12   23                                                       
CONECT   11    6   35                                                       
CONECT   12   10   42                                                       
CONECT   13   19   21                                                       
CONECT   14   18   24                                                       
CONECT   15   18   32                                                       
CONECT   16   19   34                                                       
CONECT   17    1    2   30                                                  
CONECT   18   14   15   26                                                  
CONECT   19   13   16   27   43                                             
CONECT   20    7   21   26                                                  
CONECT   21   13   20   24                                                  
CONECT   22    8   26   32                                                  
CONECT   23   10   28   36   44                                             
CONECT   24   14   21   34   45                                             
CONECT   25    9   31   35   46                                             
CONECT   26   18   20   22                                                  
CONECT   27   19   33   37                                                  
CONECT   28   23   35   38                                                  
CONECT   29   30   36   39                                                  
CONECT   30   17   29   33   41                                             
CONECT   31   25   36   40   41                                             
CONECT   32   15   22                                                       
CONECT   33   27   30                                                       
CONECT   34    3   16   24                                                  
CONECT   35   11   25   28                                                  
CONECT   36   23   29   31                                                  
CONECT   37   27                                                            
CONECT   38   28                                                            
CONECT   39   29                                                            
CONECT   40   31                                                            
CONECT   41   30   31                                                       
CONECT   42    4   12                                                       
CONECT   43   19                                                            
CONECT   44   23                                                            
CONECT   45   24                                                            
CONECT   46   25                                                            
MASTER        0    0    0    0    0    0    0    0   46    0  104    0
END

Synonyms

Not Available

Molecular Formula

C₃₁H₃₉N₅O₅S

Average Mass

593.74

Monoisotopic Mass

593.26719055

IUPAC Name

N-[(1S,4R,7S)-2-hydroxy-7-[2-(methylsulfanyl)ethyl]-5,8-dioxo-4-(propan-2-yl)-3-oxa-6,9-diazatricyclo[7.3.0.0^{2,6}]dodecan-4-yl]-6-methyl-6,11-diazatetracyclo[7.6.1.0^{2,7}.0^{12,16}]hexadeca-1(16),2,9,12,14-pentaene-4-carboximidic acid

Traditional Name

N-[(1S,4R,7S)-2-hydroxy-4-isopropyl-7-[2-(methylsulfanyl)ethyl]-5,8-dioxo-3-oxa-6,9-diazatricyclo[7.3.0.0^{2,6}]dodecan-4-yl]-6-methyl-6,11-diazatetracyclo[7.6.1.0^{2,7}.0^{12,16}]hexadeca-1(16),2,9,12,14-pentaene-4-carboximidic acid

CAS Registry Number

Not Available

SMILES

[H][C@@]12CCCN1C(=O)[C@]([H])(CCSC)N1C(=O)[C@@](OC21O)(N=C(O)C1([H])CN(C)C2([H])CC3=CNC4=CC=CC(=C34)C2=C1)C(C)C

InChI Identifier

InChI=1S/C31H39N5O5S/c1-17(2)30(29(39)36-23(10-12-42-4)28(38)35-11-6-9-25(35)31(36,40)41-30)33-27(37)19-13-21-20-7-5-8-22-26(20)18(15-32-22)14-24(21)34(3)16-19/h5,7-8,13,15,17,19,23-25,32,40H,6,9-12,14,16H2,1-4H3,(H,33,37)/t19?,23-,24?,25-,30+,31?/m0/s1

InChI Key

KRNFNSQJJMDXAQ-AZIXNVGKSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as ergopeptines. These are ergoline derivatives that contain a tripeptide structure attached to the basic ergoline ring in the same location as the amide group of the lysergic acid derivatives.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Ergoline and derivatives

Sub Class

Lysergic acids and derivatives

Direct Parent

Ergopeptines

Alternative Parents

Substituents

Ergopeptine
Hybrid peptide
Alpha-dipeptide
Lysergic acid amide
Indoloquinoline
Benzoquinoline
Quinoline-3-carboxamide
Pyrroloquinoline
N-acyl-alpha amino acid or derivatives
Alpha-amino acid or derivatives
Quinoline
3-alkylindole
Indole
Indole or derivatives
Isoindole or derivatives
Aralkylamine
N-alkylpiperazine
Oxazolidinone
Piperazine
Benzenoid
1,4-diazinane
Heteroaromatic compound
Oxazolidine
Pyrrole
Pyrrolidine
Tertiary carboxylic acid amide
Tertiary aliphatic amine
Secondary carboxylic acid amide
Orthocarboxylic acid derivative
Tertiary amine
Amino acid or derivatives
Carboxamide group
Lactam
Thioether
Sulfenyl compound
Dialkylthioether
Organoheterocyclic compound
Azacycle
Oxacycle
Alkanolamine
Carboxylic acid derivative
Organic nitrogen compound
Organic oxide
Organopnictogen compound
Hydrocarbon derivative
Organonitrogen compound
Carbonyl group
Organic oxygen compound
Amine
Organooxygen compound
Organosulfur compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.087 g/L	ALOGPS
logP	2.4	ALOGPS
logP	1.02	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	4.39	ChemAxon
pKa (Strongest Basic)	8.08	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	121.7 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	162.04 m³·mol⁻¹	ChemAxon
Polarizability	64.63 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-09	View Spectrum
MS	Mass Spectrum (Electron Ionization)	Not Available	2022-08-06	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-23	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-23	198.0
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	101.4
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-23	481.8
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	436.1
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	356.6
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-23	149.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	2041.4
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (void)	2025-10-23	451.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	277.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	257.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	406.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	155.8
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	178.6
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (void)	2025-10-23	8.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	246.3
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	149.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	346.2
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	1386.9
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	1008.8

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	Ergocladinine_TMS_1	CSCC[C@H]1C(=O)N2CCC[C@H]2C2(O[Si](C)(C)C)O[C@](N=C(O)C3C=C4C5=CC=CC6=C5C(=C[NH]6)CC4N(C)C3)(C(C)C)C(=O)N12	standard non polar	2025-10-23	2492.77
Gas Chromatography	Ergocladinine_TMS_2	CSCC[C@H]1C(=O)N2CCC[C@H]2C2(O)O[C@](N=C(O[Si](C)(C)C)C3C=C4C5=CC=CC6=C5C(=C[NH]6)CC4N(C)C3)(C(C)C)C(=O)N12	standard non polar	2025-10-23	2371.58
Gas Chromatography	Ergocladinine_TMS_3	CSCC[C@H]1C(=O)N2CCC[C@H]2C2(O)O[C@](N=C(O)C3C=C4C5=CC=CC6=C5C(=CN6[Si](C)(C)C)CC4N(C)C3)(C(C)C)C(=O)N12	standard non polar	2025-10-23	2861.4
Gas Chromatography	Ergocladinine_TMS_4	CSCC[C@H]1C(=O)N2CCC[C@H]2C2(O[Si](C)(C)C)O[C@](N=C(O[Si](C)(C)C)C3C=C4C5=CC=CC6=C5C(=C[NH]6)CC4N(C)C3)(C(C)C)C(=O)N12	standard non polar	2025-10-23	3341.04
Gas Chromatography	Ergocladinine_TMS_5	CSCC[C@H]1C(=O)N2CCC[C@H]2C2(O[Si](C)(C)C)O[C@](N=C(O)C3C=C4C5=CC=CC6=C5C(=CN6[Si](C)(C)C)CC4N(C)C3)(C(C)C)C(=O)N12	standard non polar	2025-10-23	3520.31
Gas Chromatography	Ergocladinine_TMS_6	CSCC[C@H]1C(=O)N2CCC[C@H]2C2(O)O[C@](N=C(O[Si](C)(C)C)C3C=C4C5=CC=CC6=C5C(=CN6[Si](C)(C)C)CC4N(C)C3)(C(C)C)C(=O)N12	standard non polar	2025-10-23	2043.47
Gas Chromatography	Ergocladinine_TMS_7	CSCC[C@H]1C(=O)N2CCC[C@H]2C2(O[Si](C)(C)C)O[C@](N=C(O[Si](C)(C)C)C3C=C4C5=CC=CC6=C5C(=CN6[Si](C)(C)C)CC4N(C)C3)(C(C)C)C(=O)N12	standard non polar	2025-10-23	1545.47
Gas Chromatography	Ergocladinine_TMS_1	CSCC[C@H]1C(=O)N2CCC[C@H]2C2(O[Si](C)(C)C)O[C@](N=C(O)C3C=C4C5=CC=CC6=C5C(=C[NH]6)CC4N(C)C3)(C(C)C)C(=O)N12	standard polar	2025-10-23	237.414
Gas Chromatography	Ergocladinine_TMS_2	CSCC[C@H]1C(=O)N2CCC[C@H]2C2(O)O[C@](N=C(O[Si](C)(C)C)C3C=C4C5=CC=CC6=C5C(=C[NH]6)CC4N(C)C3)(C(C)C)C(=O)N12	standard polar	2025-10-23	2898.94
Gas Chromatography	Ergocladinine_TMS_3	CSCC[C@H]1C(=O)N2CCC[C@H]2C2(O)O[C@](N=C(O)C3C=C4C5=CC=CC6=C5C(=CN6[Si](C)(C)C)CC4N(C)C3)(C(C)C)C(=O)N12	standard polar	2025-10-23	3374.36
Gas Chromatography	Ergocladinine_TMS_4	CSCC[C@H]1C(=O)N2CCC[C@H]2C2(O[Si](C)(C)C)O[C@](N=C(O[Si](C)(C)C)C3C=C4C5=CC=CC6=C5C(=C[NH]6)CC4N(C)C3)(C(C)C)C(=O)N12	standard polar	2025-10-23	536.407
Gas Chromatography	Ergocladinine_TMS_5	CSCC[C@H]1C(=O)N2CCC[C@H]2C2(O[Si](C)(C)C)O[C@](N=C(O)C3C=C4C5=CC=CC6=C5C(=CN6[Si](C)(C)C)CC4N(C)C3)(C(C)C)C(=O)N12	standard polar	2025-10-23	1203.84
Gas Chromatography	Ergocladinine_TMS_6	CSCC[C@H]1C(=O)N2CCC[C@H]2C2(O)O[C@](N=C(O[Si](C)(C)C)C3C=C4C5=CC=CC6=C5C(=CN6[Si](C)(C)C)CC4N(C)C3)(C(C)C)C(=O)N12	standard polar	2025-10-23	2343.32
Gas Chromatography	Ergocladinine_TMS_7	CSCC[C@H]1C(=O)N2CCC[C@H]2C2(O[Si](C)(C)C)O[C@](N=C(O[Si](C)(C)C)C3C=C4C5=CC=CC6=C5C(=CN6[Si](C)(C)C)CC4N(C)C3)(C(C)C)C(=O)N12	standard polar	2025-10-23	3713.44

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78445290

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139587440

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Ergocladinine (MMDBc0015808)

MOL for #<Metabolite:0x00007f9a7ed4c450>

3D MOL for #<Metabolite:0x00007f9a7ed4c450>

3D SDF for #<Metabolite:0x00007f9a7ed4c450>

3D-SDF for #<Metabolite:0x00007f9a7ed4c450>

PDB for #<Metabolite:0x00007f9a7ed4c450>

3D PDB for #<Metabolite:0x00007f9a7ed4c450>

SMILES for #<Metabolite:0x00007f9a7ed4c450>

INCHI for #<Metabolite:0x00007f9a7ed4c450>

Structure for #<Metabolite:0x00007f9a7ed4c450>

3D Structure for #<Metabolite:0x00007f9a7ed4c450>