MiMeDB: Showing metabocard for 10,11-epoxycurvularin (MMDBc0015889)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 06:39:09 UTC

Update Date

2025-10-07 16:06:28 UTC

Metabolite ID

MMDBc0015889

Metabolite Identification

Common Name

10,11-epoxycurvularin

Description

10,11-epoxycurvularin is a polyketide metabolite isolated from Limonium tubiflorum, a plant species found in Egypt. This compound is part of a broader class of secondary metabolites known for their diverse biological activities and complex structures. In the biosynthetic pathways, polyketides like 10,11-epoxycurvularin are synthesized through the action of polyketide synthases, which catalyze the condensation of acetyl-CoA and malonyl-CoA units, leading to the formation of various bioactive compounds. The presence of 10,11-epoxycurvularin alongside other metabolites such as penilactone and neobulgarone G suggests its potential involvement in ecological interactions, possibly contributing to the plant's defense mechanisms or interactions with other organisms. The study of such metabolites is crucial for understanding their roles in plant biology and their potential applications in pharmacology and biotechnology (PMID:21146414 ).

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152108392D          

 25 27  0  0  1  0            999 V2000
    0.8370   -2.6150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4520   -0.4665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3237   -1.2815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1896    0.0521    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5318    0.7189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6335   -0.3924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0185    2.0525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9653   -1.8001    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7618    0.4225    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6601    1.5338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2485    1.7561    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0613    0.8671    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8636   -0.6888    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1202    0.9412    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3503    0.6448    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7087    1.1634    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.4300    1.8302    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6069    2.2747    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2220   -0.1702    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7675    0.0609    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7353   -1.5037    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0671    1.6820    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1954   -2.0964    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8762    0.9954    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2273    1.8050    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0  0  0  0
  4  2  1  0  0  0  0
  8  1  1  1  0  0  0
  8  3  1  0  0  0  0
  9  5  2  0  0  0  0
  9  6  1  0  0  0  0
 10  5  1  0  0  0  0
 10  7  2  0  0  0  0
 11  7  1  0  0  0  0
 12  4  1  0  0  0  0
 13  6  1  0  0  0  0
 14  9  1  0  0  0  0
 14 11  2  0  0  0  0
 15 14  1  0  0  0  0
 16 12  1  0  0  0  0
 16 15  1  0  0  0  0
 17 10  1  0  0  0  0
 18 11  1  0  0  0  0
 19 13  2  0  0  0  0
 20 15  2  0  0  0  0
 21  8  1  0  0  0  0
 21 13  1  0  0  0  0
 22 12  1  0  0  0  0
 22 16  1  0  0  0  0
  8 23  1  6  0  0  0
 12 24  1  6  0  0  0
 16 25  1  6  0  0  0
M  END
> <DATABASE_ID>
MMDBc0015889

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@]12CCC[C@]([H])(C)OC(=O)CC3=CC(O)=CC(O)=C3C(=O)[C@]1([H])O2

> <INCHI_IDENTIFIER>
InChI=1S/C16H18O6/c1-8-3-2-4-12-16(22-12)15(20)14-9(6-13(19)21-8)5-10(17)7-11(14)18/h5,7-8,12,16-18H,2-4,6H2,1H3/t8-,12+,16+/m0/s1

> <INCHI_KEY>
BVDHPBILFRQGEC-FUEZOXIYSA-N

> <FORMULA>
C16H18O6

> <MOLECULAR_WEIGHT>
306.314

> <EXACT_MASS>
306.1103383

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
30.09348648510189

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R,5R,9S)-15,17-dihydroxy-9-methyl-4,10-dioxatricyclo[11.4.0.0^{3,5}]heptadeca-1(17),13,15-triene-2,11-dione

> <ALOGPS_LOGP>
1.94

> <JCHEM_LOGP>
2.5504230649999995

> <ALOGPS_LOGS>
-2.55

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.537367405751997

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.6692914136755785

> <JCHEM_PKA_STRONGEST_BASIC>
-4.260570449647193

> <JCHEM_POLAR_SURFACE_AREA>
96.36000000000001

> <JCHEM_REFRACTIVITY>
76.96

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.61e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R,5R,9S)-15,17-dihydroxy-9-methyl-4,10-dioxatricyclo[11.4.0.0^{3,5}]heptadeca-1(17),13,15-triene-2,11-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       1.562  -4.881   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.844  -0.871   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.604  -2.392   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.354   0.097   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.593   1.342   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.916  -0.733   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.635   3.831   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.802  -3.360   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.155   0.789   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.832   2.863   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.197   3.278   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.114   1.619   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.479  -1.286   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.958   1.757   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.521   1.204   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.323   2.172   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       8.269   3.416   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       3.000   4.246   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       2.281  -0.318   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       1.433   0.114   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       3.239  -2.807   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0       0.125   3.140   0.000  0.00  0.00           O+0
HETATM   23  H   UNK     0       0.365  -3.913   0.000  0.00  0.00           H+0
HETATM   24  H   UNK     0      -1.636   1.858   0.000  0.00  0.00           H+0
HETATM   25  H   UNK     0       2.291   3.369   0.000  0.00  0.00           H+0
CONECT    1    8                                                            
CONECT    2    3    4                                                       
CONECT    3    2    8                                                       
CONECT    4    2   12                                                       
CONECT    5    9   10                                                       
CONECT    6    9   13                                                       
CONECT    7   10   11                                                       
CONECT    8    1    3   21   23                                             
CONECT    9    5    6   14                                                  
CONECT   10    5    7   17                                                  
CONECT   11    7   14   18                                                  
CONECT   12    4   16   22   24                                             
CONECT   13    6   19   21                                                  
CONECT   14    9   11   15                                                  
CONECT   15   14   16   20                                                  
CONECT   16   12   15   22   25                                             
CONECT   17   10                                                            
CONECT   18   11                                                            
CONECT   19   13                                                            
CONECT   20   15                                                            
CONECT   21    8   13                                                       
CONECT   22   12   16                                                       
CONECT   23    8                                                            
CONECT   24   12                                                            
CONECT   25   16                                                            
MASTER        0    0    0    0    0    0    0    0   25    0   54    0
END

Synonyms

Not Available

Molecular Formula

C₁₆H₁₈O₆

Average Mass

306.314

Monoisotopic Mass

306.1103383

IUPAC Name

(3R,5R,9S)-15,17-dihydroxy-9-methyl-4,10-dioxatricyclo[11.4.0.0^{3,5}]heptadeca-1(17),13,15-triene-2,11-dione

Traditional Name

(3R,5R,9S)-15,17-dihydroxy-9-methyl-4,10-dioxatricyclo[11.4.0.0^{3,5}]heptadeca-1(17),13,15-triene-2,11-dione

CAS Registry Number

Not Available

SMILES

[H][C@@]12CCC[C@]([H])(C)OC(=O)CC3=CC(O)=CC(O)=C3C(=O)[C@]1([H])O2

InChI Identifier

InChI=1S/C16H18O6/c1-8-3-2-4-12-16(22-12)15(20)14-9(6-13(19)21-8)5-10(17)7-11(14)18/h5,7-8,12,16-18H,2-4,6H2,1H3/t8-,12+,16+/m0/s1

InChI Key

BVDHPBILFRQGEC-FUEZOXIYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as aryl alkyl ketones. These are ketones have the generic structure RC(=O)R', where R = aryl group and R'=alkyl group.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbonyl compounds

Direct Parent

Aryl alkyl ketones

Alternative Parents

Substituents

Aryl alkyl ketone
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Benzenoid
Vinylogous acid
Carboxylic acid ester
Lactone
Carboxylic acid derivative
Dialkyl ether
Oxirane
Organoheterocyclic compound
Oxacycle
Monocarboxylic acid or derivatives
Ether
Organic oxide
Hydrocarbon derivative
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.86 g/L	ALOGPS
logP	1.94	ALOGPS
logP	2.55	ChemAxon
logS	-2.6	ALOGPS
pKa (Strongest Acidic)	7.67	ChemAxon
pKa (Strongest Basic)	-4.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	96.36 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	76.96 m³·mol⁻¹	ChemAxon
Polarizability	30.09 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

62816743

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

98050296

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for 10,11-epoxycurvularin (MMDBc0015889)

MOL for #<Metabolite:0x00007f8de404c760>

3D MOL for #<Metabolite:0x00007f8de404c760>

3D SDF for #<Metabolite:0x00007f8de404c760>

3D-SDF for #<Metabolite:0x00007f8de404c760>

PDB for #<Metabolite:0x00007f8de404c760>

3D PDB for #<Metabolite:0x00007f8de404c760>

SMILES for #<Metabolite:0x00007f8de404c760>

INCHI for #<Metabolite:0x00007f8de404c760>

Structure for #<Metabolite:0x00007f8de404c760>

3D Structure for #<Metabolite:0x00007f8de404c760>