MiMeDB: Showing metabocard for Feigrisolide A (MMDBc0018646)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 08:48:49 UTC

Update Date

2025-10-07 16:06:51 UTC

Metabolite ID

MMDBc0018646

Metabolite Identification

Common Name

Feigrisolide A

Description

Feigrisolide A is a secondary metabolite belonging to the class of polyketides. Its chemical structure is characterized by a complex arrangement of carbon rings and functional groups, which are integral to its biological activity. The stereoselective synthesis of the proposed structure of feigrisolide A has been documented, revealing insights into its intricate molecular architecture (PMID:16839161 ). However, subsequent research has indicated that the originally published structure of feigrisolide A is erroneous, highlighting the need for careful validation in chemical characterization (PMID:16839161 ). In terms of biological pathways, Feigrisolide A is involved in various metabolic processes, although specific pathways remain to be fully elucidated. The synthesis and structural analysis of Feigrisolide A contribute to the broader understanding of polyketides, which are known for their diverse pharmacological properties and roles in natural product chemistry. Further investigation into its correct structure and biological implications may provide valuable insights into its potential applications in drug discovery and development.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152110482D          

 18 18  0  0  1  0            999 V2000
    2.8077   -1.9923    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5317    1.5196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7834    0.2009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5999    1.0053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6270   -1.1874    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4497   -1.2490    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1133    1.0053    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2691   -0.4441    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8566    1.3632    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0703    0.2009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9145   -0.5674    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8566    2.1882    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8746    0.0174    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4441   -0.4441    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9850   -1.9307    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2056    1.8251    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8301   -1.1426    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5551    1.8021    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  4  3  1  0  0  0  0
  6  1  1  0  0  0  0
  6  5  1  0  0  0  0
  7  2  1  6  0  0  0
  8  3  1  0  0  0  0
  8  5  1  1  0  0  0
  9  4  1  0  0  0  0
  9  7  1  0  0  0  0
 10  7  1  0  0  0  0
  6 11  1  6  0  0  0
  9 12  1  1  0  0  0
 13 10  2  0  0  0  0
 14  8  1  0  0  0  0
 14 10  1  0  0  0  0
  6 15  1  6  0  0  0
  7 16  1  1  0  0  0
  8 17  1  6  0  0  0
  9 18  1  6  0  0  0
M  END
> <DATABASE_ID>
MMDBc0018646

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@](C)(O)C[C@]1([H])CC[C@]([H])(O)[C@@]([H])(C)C(=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C10H18O4/c1-6(11)5-8-3-4-9(12)7(2)10(13)14-8/h6-9,11-12H,3-5H2,1-2H3/t6-,7+,8-,9-/m0/s1

> <INCHI_KEY>
FZPDDULMNZBINH-KZVJFYERSA-N

> <FORMULA>
C10H18O4

> <MOLECULAR_WEIGHT>
202.25

> <EXACT_MASS>
202.12050906

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
21.465655557277174

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R,4S,7S)-4-hydroxy-7-[(2S)-2-hydroxypropyl]-3-methyloxepan-2-one

> <ALOGPS_LOGP>
0.16

> <JCHEM_LOGP>
0.19706366866666641

> <ALOGPS_LOGS>
-0.12

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.632752574240758

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.646138581573513

> <JCHEM_PKA_STRONGEST_BASIC>
-2.5456214964159694

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
50.846799999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.52e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R,4S,7S)-4-hydroxy-7-[(2S)-2-hydroxypropyl]-3-methyloxepan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       5.241  -3.719   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.993   2.837   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.329   0.375   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.986   1.876   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.037  -2.216   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.573  -2.331   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.211   1.876   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.369  -0.829   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.599   2.545   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.131   0.375   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       5.440  -1.059   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0       1.599   4.085   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      -1.633   0.032   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       0.829  -0.829   0.000  0.00  0.00           O+0
HETATM   15  H   UNK     0       3.705  -3.604   0.000  0.00  0.00           H+0
HETATM   16  H   UNK     0       0.384   3.407   0.000  0.00  0.00           H+0
HETATM   17  H   UNK     0       1.550  -2.133   0.000  0.00  0.00           H+0
HETATM   18  H   UNK     0       2.903   3.364   0.000  0.00  0.00           H+0
CONECT    1    6                                                            
CONECT    2    7                                                            
CONECT    3    4    8                                                       
CONECT    4    3    9                                                       
CONECT    5    6    8                                                       
CONECT    6    1    5   11   15                                             
CONECT    7    2    9   10   16                                             
CONECT    8    3    5   14   17                                             
CONECT    9    4    7   12   18                                             
CONECT   10    7   13   14                                                  
CONECT   11    6                                                            
CONECT   12    9                                                            
CONECT   13   10                                                            
CONECT   14    8   10                                                       
CONECT   15    6                                                            
CONECT   16    7                                                            
CONECT   17    8                                                            
CONECT   18    9                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   36    0
END

Synonyms

Not Available

Molecular Formula

C₁₀H₁₈O₄

Average Mass

202.25

Monoisotopic Mass

202.12050906

IUPAC Name

(3R,4S,7S)-4-hydroxy-7-[(2S)-2-hydroxypropyl]-3-methyloxepan-2-one

Traditional Name

(3R,4S,7S)-4-hydroxy-7-[(2S)-2-hydroxypropyl]-3-methyloxepan-2-one

CAS Registry Number

Not Available

SMILES

[H][C@@](C)(O)C[C@]1([H])CC[C@]([H])(O)[C@@]([H])(C)C(=O)O1

InChI Identifier

InChI=1S/C10H18O4/c1-6(11)5-8-3-4-9(12)7(2)10(13)14-8/h6-9,11-12H,3-5H2,1-2H3/t6-,7+,8-,9-/m0/s1

InChI Key

FZPDDULMNZBINH-KZVJFYERSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as lactones. These are cyclic esters of hydroxy carboxylic acids, containing a 1-oxacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Lactones

Sub Class

Not Available

Direct Parent

Lactones

Alternative Parents

Substituents

Caprolactone
Oxepane
Secondary alcohol
Lactone
Carboxylic acid ester
Oxacycle
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	152 g/L	ALOGPS
logP	0.16	ALOGPS
logP	0.2	ChemAxon
logS	-0.12	ALOGPS
pKa (Strongest Acidic)	14.65	ChemAxon
pKa (Strongest Basic)	-2.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	50.85 m³·mol⁻¹	ChemAxon
Polarizability	21.47 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Actinobacteria	1		Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

C00015664

Chemspider ID

9994811

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11820158

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Feigrisolide A (MMDBc0018646)

MOL for #<Metabolite:0x00007f8de87dbd38>

3D MOL for #<Metabolite:0x00007f8de87dbd38>

3D SDF for #<Metabolite:0x00007f8de87dbd38>

3D-SDF for #<Metabolite:0x00007f8de87dbd38>

PDB for #<Metabolite:0x00007f8de87dbd38>

3D PDB for #<Metabolite:0x00007f8de87dbd38>

SMILES for #<Metabolite:0x00007f8de87dbd38>

INCHI for #<Metabolite:0x00007f8de87dbd38>

Structure for #<Metabolite:0x00007f8de87dbd38>

3D Structure for #<Metabolite:0x00007f8de87dbd38>