MiMeDB: Showing metabocard for 3,3'-bis-indolyl(phenyl)methane (MMDBc0019398)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 09:28:46 UTC

Update Date

2025-10-07 16:06:57 UTC

Metabolite ID

MMDBc0019398

Metabolite Identification

Common Name

3,3'-bis-indolyl(phenyl)methane

Description

3,3'-bis-indolyl(phenyl)methane is a bis-indole derivative classified within the chemical class of indole compounds. Its structure features two indole rings linked to a phenyl group via a methylene bridge, contributing to its unique physicochemical properties. The compound has been studied for its ability to form large molecular self-aggregates in aqueous solutions, which can disaggregate in the presence of γ-cyclodextrin through inclusion complexation, as noted in previous studies (PMID:40400494 ). This self-aggregation behavior may influence its solubility and bioavailability, potentially affecting its interactions within biological systems. While the compound's specific biological pathways are not the focus here, it is known to participate in various cellular processes, including modulation of signaling pathways and interactions with cellular receptors. The unique structural features and aggregation properties of 3,3'-bis-indolyl(phenyl)methane make it a compound of interest in both chemical and biological research contexts.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152111282D          

 25 29  0  0  0  0            999 V2000
    2.5399   -1.7684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7948   -0.9838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7329   -1.9399    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2508    1.6889    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9652    1.2764    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2428   -0.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1809   -1.3268    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5363    1.2764    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9652    0.4514    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2587   -0.8543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4358   -0.5422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5363    0.4514    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0768   -0.1006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2508    0.0389    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838    0.0709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0792   -0.7681    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  3  1  1  0  0  0  0
  6  4  2  0  0  0  0
  7  5  2  0  0  0  0
  8  2  1  0  0  0  0
  9  3  2  0  0  0  0
 10  4  1  0  0  0  0
 11  5  1  0  0  0  0
 12  6  1  0  0  0  0
 13  7  1  0  0  0  0
 16  8  2  0  0  0  0
 16  9  1  0  0  0  0
 17 10  2  0  0  0  0
 18 11  2  0  0  0  0
 19 14  2  0  0  0  0
 19 17  1  0  0  0  0
 20 15  2  0  0  0  0
 20 18  1  0  0  0  0
 21 12  2  0  0  0  0
 21 17  1  0  0  0  0
 22 13  2  0  0  0  0
 22 18  1  0  0  0  0
 23 16  1  0  0  0  0
 23 19  1  0  0  0  0
 23 20  1  0  0  0  0
 24 14  1  0  0  0  0
 24 21  1  0  0  0  0
 25 15  1  0  0  0  0
 25 22  1  0  0  0  0
M  END


  Mrv1652305152111282D          

 25 29  0  0  0  0            999 V2000
    2.5399   -1.7684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7948   -0.9838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7329   -1.9399    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2508    1.6889    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9652    1.2764    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2428   -0.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1809   -1.3268    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5363    1.2764    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9652    0.4514    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2587   -0.8543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4358   -0.5422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5363    0.4514    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0768   -0.1006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2508    0.0389    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838    0.0709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0792   -0.7681    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  3  1  1  0  0  0  0
  6  4  2  0  0  0  0
  7  5  2  0  0  0  0
  8  2  1  0  0  0  0
  9  3  2  0  0  0  0
 10  4  1  0  0  0  0
 11  5  1  0  0  0  0
 12  6  1  0  0  0  0
 13  7  1  0  0  0  0
 16  8  2  0  0  0  0
 16  9  1  0  0  0  0
 17 10  2  0  0  0  0
 18 11  2  0  0  0  0
 19 14  2  0  0  0  0
 19 17  1  0  0  0  0
 20 15  2  0  0  0  0
 20 18  1  0  0  0  0
 21 12  2  0  0  0  0
 21 17  1  0  0  0  0
 22 13  2  0  0  0  0
 22 18  1  0  0  0  0
 23 16  1  0  0  0  0
 23 19  1  0  0  0  0
 23 20  1  0  0  0  0
 24 14  1  0  0  0  0
 24 21  1  0  0  0  0
 25 15  1  0  0  0  0
 25 22  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0019398

> <DATABASE_NAME>
MIME

> <SMILES>
N1C=C(C(C2=CNC3=CC=CC=C23)C2=CC=CC=C2)C2=CC=CC=C12

> <INCHI_IDENTIFIER>
InChI=1S/C23H18N2/c1-2-8-16(9-3-1)23(19-14-24-21-12-6-4-10-17(19)21)20-15-25-22-13-7-5-11-18(20)22/h1-15,23-25H

> <INCHI_KEY>
PHXLXBRHTYYWJW-UHFFFAOYSA-N

> <FORMULA>
C23H18N2

> <MOLECULAR_WEIGHT>
322.411

> <EXACT_MASS>
322.146998588

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
36.684400336985334

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-[(1H-indol-3-yl)(phenyl)methyl]-1H-indole

> <ALOGPS_LOGP>
5.89

> <JCHEM_LOGP>
5.683386897999999

> <ALOGPS_LOGS>
-7.09

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
16.713864147001498

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.057067904242675

> <JCHEM_POLAR_SURFACE_AREA>
31.58

> <JCHEM_REFRACTIVITY>
102.61180000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.63e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-[1H-indol-3-yl(phenyl)methyl]-1H-indole

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       4.741  -3.301   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.217  -1.836   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.235  -3.621   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.335   3.153   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.258   2.073   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -3.668   2.383   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.258   3.613   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.187  -0.692   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.204  -2.477   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.001   2.383   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.924   1.303   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.668   0.843   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.924   4.383   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.483  -1.595   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.220   2.843   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.680  -1.012   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.001   0.843   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.590   2.073   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.143  -0.188   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.126   1.597   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -2.335   0.073   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       3.590   3.613   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.650   0.132   0.000  0.00  0.00           C+0
HETATM   24  N   UNK     0      -2.015  -1.434   0.000  0.00  0.00           N+0
HETATM   25  N   UNK     0       2.126   4.089   0.000  0.00  0.00           N+0
CONECT    1    2    3                                                       
CONECT    2    1    8                                                       
CONECT    3    1    9                                                       
CONECT    4    6   10                                                       
CONECT    5    7   11                                                       
CONECT    6    4   12                                                       
CONECT    7    5   13                                                       
CONECT    8    2   16                                                       
CONECT    9    3   16                                                       
CONECT   10    4   17                                                       
CONECT   11    5   18                                                       
CONECT   12    6   21                                                       
CONECT   13    7   22                                                       
CONECT   14   19   24                                                       
CONECT   15   20   25                                                       
CONECT   16    8    9   23                                                  
CONECT   17   10   19   21                                                  
CONECT   18   11   20   22                                                  
CONECT   19   14   17   23                                                  
CONECT   20   15   18   23                                                  
CONECT   21   12   17   24                                                  
CONECT   22   13   18   25                                                  
CONECT   23   16   19   20                                                  
CONECT   24   14   21                                                       
CONECT   25   15   22                                                       
MASTER        0    0    0    0    0    0    0    0   25    0   58    0
END

Synonyms

Not Available

Molecular Formula

C₂₃H₁₈N₂

Average Mass

322.411

Monoisotopic Mass

322.146998588

IUPAC Name

3-[(1H-indol-3-yl)(phenyl)methyl]-1H-indole

Traditional Name

3-[1H-indol-3-yl(phenyl)methyl]-1H-indole

CAS Registry Number

Not Available

SMILES

N1C=C(C(C2=CNC3=CC=CC=C23)C2=CC=CC=C2)C2=CC=CC=C12

InChI Identifier

InChI=1S/C23H18N2/c1-2-8-16(9-3-1)23(19-14-24-21-12-6-4-10-17(19)21)20-15-25-22-13-7-5-11-18(20)22/h1-15,23-25H

InChI Key

PHXLXBRHTYYWJW-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 3-alkylindoles. 3-Alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 3-position.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Indoles

Direct Parent

3-alkylindoles

Alternative Parents

Substituents

3-alkylindole
Benzenoid
Substituted pyrrole
Monocyclic benzene moiety
Heteroaromatic compound
Pyrrole
Azacycle
Organic nitrogen compound
Hydrocarbon derivative
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	2.6e-05 g/L	ALOGPS
logP	5.89	ALOGPS
logP	5.68	ChemAxon
logS	-7.1	ALOGPS
pKa (Strongest Acidic)	16.06	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	31.58 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	102.61 m³·mol⁻¹	ChemAxon
Polarizability	36.68 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	1		Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8120649

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

9945037

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for 3,3'-bis-indolyl(phenyl)methane (MMDBc0019398)

MOL for #<Metabolite:0x00005560b0f021f0>

3D MOL for #<Metabolite:0x00005560b0f021f0>

3D SDF for #<Metabolite:0x00005560b0f021f0>

3D-SDF for #<Metabolite:0x00005560b0f021f0>

PDB for #<Metabolite:0x00005560b0f021f0>

3D PDB for #<Metabolite:0x00005560b0f021f0>

SMILES for #<Metabolite:0x00005560b0f021f0>

INCHI for #<Metabolite:0x00005560b0f021f0>

Structure for #<Metabolite:0x00005560b0f021f0>

3D Structure for #<Metabolite:0x00005560b0f021f0>