MiMeDB: Showing metabocard for Paenilarvin A (MMDBc0020300)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 10:17:40 UTC

Update Date

2025-10-07 16:07:04 UTC

Metabolite ID

MMDBc0020300

Metabolite Identification

Common Name

Paenilarvin A

Description

Paenilarvin A is a polyketide metabolite. There is limited literature available on this compound, and specific studies detailing its properties and biological activities are scarce.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152112172D          

 88 90  0  0  1  0            999 V2000
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M  END


  Mrv1652305152112172D          

 88 90  0  0  1  0            999 V2000
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    6.4218   -2.3569    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6551    0.0511    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1718   -0.6143    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3237   -0.2484    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7521    1.7232    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5113    1.7671    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2699   -2.7228    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4576   -0.7073    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6095   -0.3415    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8484   -2.2330    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7163   -2.2330    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1630   -1.1352    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9309    1.4322    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4916   -0.1839    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1360   -2.2639    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7523   -0.2794    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0290   -0.6763    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8913   -2.3119    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  5  4  1  0  0  0  0
  6  4  1  0  0  0  0
  7  5  1  0  0  0  0
  8  6  1  0  0  0  0
  9  7  1  0  0  0  0
 10  8  1  0  0  0  0
 11  9  1  0  0  0  0
 13 10  1  0  0  0  0
 14 11  1  0  0  0  0
 15 12  1  0  0  0  0
 18 16  1  0  0  0  0
 19 17  2  0  0  0  0
 21 20  1  0  0  0  0
 22 12  1  0  0  0  0
 29  2  1  0  0  0  0
 29  3  1  0  0  0  0
 29 13  1  0  0  0  0
 30 16  2  0  0  0  0
 30 17  1  0  0  0  0
 30 23  1  0  0  0  0
 31 14  1  1  0  0  0
 31 24  1  0  0  0  0
 32 18  2  0  0  0  0
 32 19  1  0  0  0  0
 33 20  1  6  0  0  0
 34 23  1  6  0  0  0
 35 25  1  6  0  0  0
 36 26  1  1  0  0  0
 37 27  1  1  0  0  0
 38 28  1  1  0  0  0
 39 15  1  0  0  0  0
 40 21  1  0  0  0  0
 41 25  1  0  0  0  0
 42 26  1  0  0  0  0
 43 27  1  0  0  0  0
 44 28  1  0  0  0  0
 45 24  1  0  0  0  0
 46 36  1  0  0  0  0
 47 34  1  0  0  0  0
 48 35  1  0  0  0  0
 49 37  1  0  0  0  0
 50 38  1  0  0  0  0
 51 39  1  0  0  0  0
 52 33  1  0  0  0  0
 53 40  2  0  0  0  0
 54 41  2  0  0  0  0
 55 42  2  0  0  0  0
 56 43  2  0  0  0  0
 57 44  2  0  0  0  0
 58 31  1  0  0  0  0
 58 46  2  0  0  0  0
 59 35  1  0  0  0  0
 59 45  2  0  0  0  0
 60 33  1  0  0  0  0
 60 49  2  0  0  0  0
 61 34  1  0  0  0  0
 61 48  2  0  0  0  0
 62 36  1  0  0  0  0
 62 50  2  0  0  0  0
 63 37  1  0  0  0  0
 63 47  2  0  0  0  0
 64 38  1  0  0  0  0
 64 51  2  0  0  0  0
 65 22  1  0  0  0  0
 65 39  1  0  0  0  0
 65 52  1  0  0  0  0
 66 32  1  0  0  0  0
 67 40  1  0  0  0  0
 68 41  1  0  0  0  0
 69 42  1  0  0  0  0
 70 43  1  0  0  0  0
 71 44  1  0  0  0  0
 45 72  1  4  0  0  0
 46 73  1  4  0  0  0
 47 74  1  4  0  0  0
 48 75  1  4  0  0  0
 49 76  1  4  0  0  0
 50 77  1  4  0  0  0
 51 78  1  4  0  0  0
 79 52  2  0  0  0  0
 80 29  1  0  0  0  0
 31 81  1  6  0  0  0
 33 82  1  6  0  0  0
 34 83  1  1  0  0  0
 35 84  1  6  0  0  0
 36 85  1  6  0  0  0
 37 86  1  1  0  0  0
 38 87  1  1  0  0  0
 39 88  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0020300

> <DATABASE_NAME>
MIME

> <SMILES>
[H]C(C)(CC)CCCCCCCCCC[C@@]1([H])CC(O)=N[C@@]([H])(CC(O)=N)C(O)=N[C@]([H])(CC2=CC=C(O)C=C2)C(O)=N[C@]([H])(CC(O)=N)C(O)=N[C@@]([H])(CCC(O)=N)C(=O)N2CCC[C@]2([H])C(O)=N[C@]([H])(CC(O)=N)C(O)=N[C@@]([H])(CC(O)=N)C(O)=N1

> <INCHI_IDENTIFIER>
InChI=1S/C52H81N13O14/c1-3-29(2)13-10-8-6-4-5-7-9-11-14-31-24-45(72)59-35(25-41(54)68)48(75)61-34(23-30-16-18-32(66)19-17-30)47(74)63-37(27-43(56)70)49(76)60-33(20-21-40(53)67)52(79)65-22-12-15-39(65)51(78)64-38(28-44(57)71)50(77)62-36(26-42(55)69)46(73)58-31/h16-19,29,31,33-39,66H,3-15,20-28H2,1-2H3,(H2,53,67)(H2,54,68)(H2,55,69)(H2,56,70)(H2,57,71)(H,58,73)(H,59,72)(H,60,76)(H,61,75)(H,62,77)(H,63,74)(H,64,78)/t29?,31-,33-,34+,35-,36-,37+,38+,39+/m0/s1

> <INCHI_KEY>
XKKADACNPRYILN-GMDHZIEOSA-N

> <FORMULA>
C52H81N13O14

> <MOLECULAR_WEIGHT>
1112.297

> <EXACT_MASS>
1111.60259434

> <JCHEM_ACCEPTOR_COUNT>
26

> <JCHEM_ATOM_COUNT>
160

> <JCHEM_AVERAGE_POLARIZABILITY>
117.5046194046669

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
18

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-[(3R,6S,9S,13S,16R,19R,22S,27aR)-1,4,7,11,14,17,20-heptahydroxy-3,6,13,19-tetrakis[(C-hydroxycarbonimidoyl)methyl]-16-[(4-hydroxyphenyl)methyl]-9-(11-methyltridecyl)-23-oxo-3H,6H,9H,10H,13H,16H,19H,22H,23H,25H,26H,27H,27aH-pyrrolo[2,1-i]1,4,7,10,13,16,19,22-octaazacyclopentacosan-22-yl]propanimidic acid

> <ALOGPS_LOGP>
1.65

> <JCHEM_LOGP>
5.9980330806666675

> <ALOGPS_LOGS>
-4.37

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
3.235491079449077

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.7911529681476566

> <JCHEM_POLAR_SURFACE_AREA>
489.0700000000003

> <JCHEM_REFRACTIVITY>
339.3539999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
25

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.79e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-[(3R,6S,9S,13S,16R,19R,22S,27aR)-1,4,7,11,14,17,20-heptahydroxy-3,6,13,19-tetrakis(C-hydroxycarbonimidoylmethyl)-16-[(4-hydroxyphenyl)methyl]-9-(11-methyltridecyl)-23-oxo-3H,6H,9H,10H,13H,16H,19H,22H,25H,26H,27H,27aH-pyrrolo[2,1-i]1,4,7,10,13,16,19,22-octaazacyclopentacosan-22-yl]propanimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0     -15.984  -3.398   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -13.317  -4.938   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -14.650  -2.628   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.648  -2.628   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.315  -3.398   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -7.982  -3.398   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.981  -2.628   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -9.316  -2.628   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.647  -3.398   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0     -10.649  -3.398   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.314  -2.628   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      15.153  -5.366   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -11.983  -2.628   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.020  -3.398   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      13.625  -5.172   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.538   5.753   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.154   3.472   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.221   6.552   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.838   4.271   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      14.754   0.161   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      14.788   1.701   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      15.809  -3.973   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.821   3.414   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.317  -0.944   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.435   2.717   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.304  -5.025   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      10.804   2.558   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       9.321  -4.342   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -13.317  -3.398   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       5.504   4.213   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       1.354  -2.628   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       2.871   5.811   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      13.404  -0.579   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       6.788   1.875   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       2.610   1.187   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       5.337  -3.485   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      10.771   1.018   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       9.354  -2.802   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      13.337  -3.659   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      16.138   2.442   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       1.023   3.331   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       3.954  -5.766   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       9.488   3.356   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      10.637  -5.140   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       0.312   0.223   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0       4.021  -2.686   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0       8.104   1.076   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0       4.121   1.933   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      12.121   1.759   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0       8.004  -3.543   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      12.021  -2.860   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      14.721  -1.378   0.000  0.00  0.00           C+0
HETATM   53  N   UNK     0      17.455   1.643   0.000  0.00  0.00           N+0
HETATM   54  N   UNK     0      -0.215   2.414   0.000  0.00  0.00           N+0
HETATM   55  N   UNK     0       2.637  -4.967   0.000  0.00  0.00           N+0
HETATM   56  N   UNK     0       9.521   4.896   0.000  0.00  0.00           N+0
HETATM   57  N   UNK     0      10.604  -6.680   0.000  0.00  0.00           N+0
HETATM   58  N   UNK     0       2.671  -3.427   0.000  0.00  0.00           N+0
HETATM   59  N   UNK     0       1.111   1.540   0.000  0.00  0.00           N+0
HETATM   60  N   UNK     0      13.438   0.960   0.000  0.00  0.00           N+0
HETATM   61  N   UNK     0       5.438   1.134   0.000  0.00  0.00           N+0
HETATM   62  N   UNK     0       6.687  -2.744   0.000  0.00  0.00           N+0
HETATM   63  N   UNK     0       9.454   1.817   0.000  0.00  0.00           N+0
HETATM   64  N   UNK     0      10.671  -3.601   0.000  0.00  0.00           N+0
HETATM   65  N   UNK     0      14.688  -2.918   0.000  0.00  0.00           N+0
HETATM   66  O   UNK     0       1.554   6.609   0.000  0.00  0.00           O+0
HETATM   67  O   UNK     0      16.171   3.982   0.000  0.00  0.00           O+0
HETATM   68  O   UNK     0       0.848   4.861   0.000  0.00  0.00           O+0
HETATM   69  O   UNK     0       3.920  -7.305   0.000  0.00  0.00           O+0
HETATM   70  O   UNK     0       8.138   2.616   0.000  0.00  0.00           O+0
HETATM   71  O   UNK     0      11.987  -4.400   0.000  0.00  0.00           O+0
HETATM   72  O   UNK     0      -1.223   0.095   0.000  0.00  0.00           O+0
HETATM   73  O   UNK     0       4.054  -1.147   0.000  0.00  0.00           O+0
HETATM   74  O   UNK     0       8.071  -0.464   0.000  0.00  0.00           O+0
HETATM   75  O   UNK     0       3.271   3.217   0.000  0.00  0.00           O+0
HETATM   76  O   UNK     0      12.155   3.299   0.000  0.00  0.00           O+0
HETATM   77  O   UNK     0       7.971  -5.083   0.000  0.00  0.00           O+0
HETATM   78  O   UNK     0      12.054  -1.320   0.000  0.00  0.00           O+0
HETATM   79  O   UNK     0      16.071  -0.637   0.000  0.00  0.00           O+0
HETATM   80  H   UNK     0     -14.650  -4.168   0.000  0.00  0.00           H+0
HETATM   81  H   UNK     0       1.337  -4.168   0.000  0.00  0.00           H+0
HETATM   82  H   UNK     0      13.371  -2.119   0.000  0.00  0.00           H+0
HETATM   83  H   UNK     0       5.471   2.674   0.000  0.00  0.00           H+0
HETATM   84  H   UNK     0       2.784  -0.343   0.000  0.00  0.00           H+0
HETATM   85  H   UNK     0       3.987  -4.226   0.000  0.00  0.00           H+0
HETATM   86  H   UNK     0      10.738  -0.522   0.000  0.00  0.00           H+0
HETATM   87  H   UNK     0       9.387  -1.262   0.000  0.00  0.00           H+0
HETATM   88  H   UNK     0      14.730  -4.316   0.000  0.00  0.00           H+0
CONECT    1    3                                                            
CONECT    2   29                                                            
CONECT    3    1   29                                                       
CONECT    4    5    6                                                       
CONECT    5    4    7                                                       
CONECT    6    4    8                                                       
CONECT    7    5    9                                                       
CONECT    8    6   10                                                       
CONECT    9    7   11                                                       
CONECT   10    8   13                                                       
CONECT   11    9   14                                                       
CONECT   12   15   22                                                       
CONECT   13   10   29                                                       
CONECT   14   11   31                                                       
CONECT   15   12   39                                                       
CONECT   16   18   30                                                       
CONECT   17   19   30                                                       
CONECT   18   16   32                                                       
CONECT   19   17   32                                                       
CONECT   20   21   33                                                       
CONECT   21   20   40                                                       
CONECT   22   12   65                                                       
CONECT   23   30   34                                                       
CONECT   24   31   45                                                       
CONECT   25   35   41                                                       
CONECT   26   36   42                                                       
CONECT   27   37   43                                                       
CONECT   28   38   44                                                       
CONECT   29    2    3   13   80                                             
CONECT   30   16   17   23                                                  
CONECT   31   14   24   58   81                                             
CONECT   32   18   19   66                                                  
CONECT   33   20   52   60   82                                             
CONECT   34   23   47   61   83                                             
CONECT   35   25   48   59   84                                             
CONECT   36   26   46   62   85                                             
CONECT   37   27   49   63   86                                             
CONECT   38   28   50   64   87                                             
CONECT   39   15   51   65   88                                             
CONECT   40   21   53   67                                                  
CONECT   41   25   54   68                                                  
CONECT   42   26   55   69                                                  
CONECT   43   27   56   70                                                  
CONECT   44   28   57   71                                                  
CONECT   45   24   59   72                                                  
CONECT   46   36   58   73                                                  
CONECT   47   34   63   74                                                  
CONECT   48   35   61   75                                                  
CONECT   49   37   60   76                                                  
CONECT   50   38   62   77                                                  
CONECT   51   39   64   78                                                  
CONECT   52   33   65   79                                                  
CONECT   53   40                                                            
CONECT   54   41                                                            
CONECT   55   42                                                            
CONECT   56   43                                                            
CONECT   57   44                                                            
CONECT   58   31   46                                                       
CONECT   59   35   45                                                       
CONECT   60   33   49                                                       
CONECT   61   34   48                                                       
CONECT   62   36   50                                                       
CONECT   63   37   47                                                       
CONECT   64   38   51                                                       
CONECT   65   22   39   52                                                  
CONECT   66   32                                                            
CONECT   67   40                                                            
CONECT   68   41                                                            
CONECT   69   42                                                            
CONECT   70   43                                                            
CONECT   71   44                                                            
CONECT   72   45                                                            
CONECT   73   46                                                            
CONECT   74   47                                                            
CONECT   75   48                                                            
CONECT   76   49                                                            
CONECT   77   50                                                            
CONECT   78   51                                                            
CONECT   79   52                                                            
CONECT   80   29                                                            
CONECT   81   31                                                            
CONECT   82   33                                                            
CONECT   83   34                                                            
CONECT   84   35                                                            
CONECT   85   36                                                            
CONECT   86   37                                                            
CONECT   87   38                                                            
CONECT   88   39                                                            
MASTER        0    0    0    0    0    0    0    0   88    0  180    0
END

Synonyms

Not Available

Molecular Formula

C₅₂H₈₁N₁₃O₁₄

Average Mass

1112.297

Monoisotopic Mass

1111.60259434

IUPAC Name

3-[(3R,6S,9S,13S,16R,19R,22S,27aR)-1,4,7,11,14,17,20-heptahydroxy-3,6,13,19-tetrakis[(C-hydroxycarbonimidoyl)methyl]-16-[(4-hydroxyphenyl)methyl]-9-(11-methyltridecyl)-23-oxo-3H,6H,9H,10H,13H,16H,19H,22H,23H,25H,26H,27H,27aH-pyrrolo[2,1-i]1,4,7,10,13,16,19,22-octaazacyclopentacosan-22-yl]propanimidic acid

Traditional Name

3-[(3R,6S,9S,13S,16R,19R,22S,27aR)-1,4,7,11,14,17,20-heptahydroxy-3,6,13,19-tetrakis(C-hydroxycarbonimidoylmethyl)-16-[(4-hydroxyphenyl)methyl]-9-(11-methyltridecyl)-23-oxo-3H,6H,9H,10H,13H,16H,19H,22H,25H,26H,27H,27aH-pyrrolo[2,1-i]1,4,7,10,13,16,19,22-octaazacyclopentacosan-22-yl]propanimidic acid

CAS Registry Number

Not Available

SMILES

[H]C(C)(CC)CCCCCCCCCC[C@@]1([H])CC(O)=N[C@@]([H])(CC(O)=N)C(O)=N[C@]([H])(CC2=CC=C(O)C=C2)C(O)=N[C@]([H])(CC(O)=N)C(O)=N[C@@]([H])(CCC(O)=N)C(=O)N2CCC[C@]2([H])C(O)=N[C@]([H])(CC(O)=N)C(O)=N[C@@]([H])(CC(O)=N)C(O)=N1

InChI Identifier

InChI=1S/C52H81N13O14/c1-3-29(2)13-10-8-6-4-5-7-9-11-14-31-24-45(72)59-35(25-41(54)68)48(75)61-34(23-30-16-18-32(66)19-17-30)47(74)63-37(27-43(56)70)49(76)60-33(20-21-40(53)67)52(79)65-22-12-15-39(65)51(78)64-38(28-44(57)71)50(77)62-36(26-42(55)69)46(73)58-31/h16-19,29,31,33-39,66H,3-15,20-28H2,1-2H3,(H2,53,67)(H2,54,68)(H2,55,69)(H2,56,70)(H2,57,71)(H,58,73)(H,59,72)(H,60,76)(H,61,75)(H,62,77)(H,63,74)(H,64,78)/t29?,31-,33-,34+,35-,36-,37+,38+,39+/m0/s1

InChI Key

XKKADACNPRYILN-GMDHZIEOSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Cyclic peptides

Alternative Parents

Substituents

Cyclic alpha peptide
Alpha-amino acid or derivatives
1-hydroxy-2-unsubstituted benzenoid
Phenol
Benzenoid
Monocyclic benzene moiety
Cyclic carboximidic acid
Tertiary carboxylic acid amide
Pyrrolidine
Lactam
Carboxamide group
Azacycle
Organoheterocyclic compound
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Polyol
Carboximidic acid derivative
Carboximidic acid
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.048 g/L	ALOGPS
logP	1.65	ALOGPS
logP	6	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Acidic)	2.79	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	26	ChemAxon
Hydrogen Donor Count	18	ChemAxon
Polar Surface Area	489.07 Å²	ChemAxon
Rotatable Bond Count	25	ChemAxon
Refractivity	339.35 m³·mol⁻¹	ChemAxon
Polarizability	117.5 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Spectra

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-23	708.4
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	374.5
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-23	667.4
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	547.7
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	510.9
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-23	169.7
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	2021.1
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (void)	2025-10-23	899.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	174.3
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	205.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	280.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	204.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	199.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	26.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	230.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	269.9
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	496.9
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	1080.1
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	1022.7

Retention Indices

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Firmicutes	1		Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78442839

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139588779

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Paenilarvin A (MMDBc0020300)

MOL for #<Metabolite:0x00007f2e2d994050>

3D MOL for #<Metabolite:0x00007f2e2d994050>

3D SDF for #<Metabolite:0x00007f2e2d994050>

3D-SDF for #<Metabolite:0x00007f2e2d994050>

PDB for #<Metabolite:0x00007f2e2d994050>

3D PDB for #<Metabolite:0x00007f2e2d994050>

SMILES for #<Metabolite:0x00007f2e2d994050>

INCHI for #<Metabolite:0x00007f2e2d994050>

Structure for #<Metabolite:0x00007f2e2d994050>

3D Structure for #<Metabolite:0x00007f2e2d994050>