MiMeDB: Showing metabocard for Desferrioxamine E (MMDBc0024571)

Microbial

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-15 14:22:10 UTC

Update Date

2022-08-12 20:02:39 UTC

Metabolite ID

MMDBc0024571

Metabolite Identification

Common Name

Desferrioxamine E

Description

desferrioxamine E, also known as nocardamin, belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides. desferrioxamine E is an extremely weak basic (essentially neutral) compound (based on its pKa). A cyclic hydroxamic acid siderophore that is produced by several bacterial species and exhibits antitumour activity.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
Deferrioxamine e	ChEBI
Nocardamin	ChEBI
Nocardamine	ChEBI

Molecular Formula

C₂₇H₄₈N₆O₉

Average Mass

600.714

Monoisotopic Mass

600.34827715

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

Not Available

InChI Identifier

InChI=1S/C27H48N6O9/c34-22-10-14-26(38)32(41)20-8-3-6-18-30-24(36)12-15-27(39)33(42)21-9-2-5-17-29-23(35)11-13-25(37)31(40)19-7-1-4-16-28-22/h40-42H,1-21H2,(H,28,34)(H,29,35)(H,30,36)

InChI Key

NHKCCADZVLTPPO-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Macrolactams

Sub Class

Not Available

Direct Parent

Macrolactams

Alternative Parents

Substituents

Macrolactam
Carboxamide group
Hydroxamic acid
Lactam
Secondary carboxylic acid amide
Carboxylic acid derivative
Polyol
Organoheterocyclic compound
Azacycle
Organooxygen compound
Organonitrogen compound
Organic oxide
Organopnictogen compound
Organic oxygen compound
Carbonyl group
Hydrocarbon derivative
Organic nitrogen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

macrocycle (CHEBI:50437 )
cyclic hydroxamic acid (CHEBI:50437 )
cyclic desferrioxamine (CHEBI:50437 )
a hydroxamate siderophore (CPD-11957 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Not Available

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Actinobacteria	75	Human	Metabolic reconstruction; Microbial culture
Bacteria/Eubacteria	Actinobacteria	96	Human	Metabolic reconstruction; Microbial culture
Bacteria/Eubacteria	Proteobacteria	10	Human feces; Human ; Human sputum; Human mucosa; Human subgingival plaque	Microbial culture
Bacteria/Eubacteria	Spirochaetes	1		Microbial culture
Bacteria	Proteobacteria	8	Human feces; Human ; Human sputum; Human mucosa; Human subgingival plaque	Microbial culture
Eukaryota/Fungi	Ascomycota	2	Human feces	Microbial culture

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

CPD-11957

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

161532

PDB ID

Not Available

ChEBI ID

50437

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Showing metabocard for Desferrioxamine E (MMDBc0024571)

MOL for #<Metabolite:0x00007f2e5061a208>

3D MOL for #<Metabolite:0x00007f2e5061a208>

3D SDF for #<Metabolite:0x00007f2e5061a208>

3D-SDF for #<Metabolite:0x00007f2e5061a208>

PDB for #<Metabolite:0x00007f2e5061a208>

3D PDB for #<Metabolite:0x00007f2e5061a208>

SMILES for #<Metabolite:0x00007f2e5061a208>

INCHI for #<Metabolite:0x00007f2e5061a208>

Structure for #<Metabolite:0x00007f2e5061a208>

3D Structure for #<Metabolite:0x00007f2e5061a208>