MiMeDB: Showing metabocard for Microcolin F (MMDBc0025334)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 15:03:29 UTC

Update Date

2025-10-07 16:07:31 UTC

Metabolite ID

MMDBc0025334

Metabolite Identification

Common Name

Microcolin F

Description

Microcolin F is a member of the class of metabolites known as alkaloids. There is limited literature available on Microcolin F, and further research is needed to fully understand its properties and potential biological significance.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152117032D          

 62 63  0  0  1  0            999 V2000
   10.0509    2.1530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1956   -0.3220    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.9101    0.9155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.9101    4.2155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6246    5.4530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9088    2.9780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.3377    2.9780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.2612    5.3099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.0535    2.1530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.7680    0.9155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7667    2.9780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.0535    2.9780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7654    1.7405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4798    2.1530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1943    1.7405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.3381    6.7780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.7861    7.3911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4811    0.9155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.6233    1.7405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.4660    6.7226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.3861    5.9380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1956    0.5030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6246    4.6280    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9088    2.1530    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   14.3377    2.1530    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   22.9256    6.0635    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   19.3390    1.7405    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   20.0535    0.5030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.6410    6.7226    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.4811    1.7405    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   20.7209    5.9380    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   22.0324    7.0555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6246    2.1530    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   19.3390    4.2155    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   17.1956    2.1530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0522    1.7405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.5056    5.6830    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6246    2.9780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.0535    4.6280    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.9101    1.7405    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   15.7667    2.1530    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   19.3390    3.3905    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   20.0535    5.4530    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   22.1187    6.2351    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   20.0535   -0.3220    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.1561    7.3900    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.3179    7.4680    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.1956    2.9780    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.0522    0.9155    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.6771    4.8761    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.9101    3.3905    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.7680    4.2155    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.3390    0.9155    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.1943    2.5655    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6233    2.5655    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   22.4064    5.4224    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.3390    2.5655    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.8262    6.5935    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.1956    1.3280    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   20.8500    5.1231    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.6246    1.3280    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.3390    5.0405    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
 13  1  1  0  0  0  0
 14 13  1  0  0  0  0
 15 14  1  0  0  0  0
 17 16  2  0  0  0  0
 22  2  1  0  0  0  0
 22  3  1  0  0  0  0
 22 18  2  0  0  0  0
 23  4  1  0  0  0  0
 23  5  1  0  0  0  0
 24  6  1  1  0  0  0
 24 15  1  0  0  0  0
 24 19  1  0  0  0  0
 25  7  1  1  0  0  0
 25 19  1  0  0  0  0
 26  8  1  6  0  0  0
 26 16  1  0  0  0  0
 27  9  1  1  0  0  0
 28 10  1  0  0  0  0
 29 20  1  0  0  0  0
 29 21  1  0  0  0  0
 30 18  1  0  0  0  0
 31 20  1  0  0  0  0
 32 17  1  0  0  0  0
 33 27  1  0  0  0  0
 34 23  1  0  0  0  0
 35 30  1  0  0  0  0
 36 25  1  0  0  0  0
 31 37  1  1  0  0  0
 38 33  1  0  0  0  0
 39 34  1  0  0  0  0
 33 40  1  6  0  0  0
 40 35  2  0  0  0  0
 41 11  1  0  0  0  0
 30 41  1  1  0  0  0
 41 36  1  0  0  0  0
 42 12  1  0  0  0  0
 34 42  1  6  0  0  0
 42 38  1  0  0  0  0
 43 21  1  0  0  0  0
 43 31  1  0  0  0  0
 43 39  1  0  0  0  0
 44 26  1  0  0  0  0
 44 32  1  0  0  0  0
 44 37  1  0  0  0  0
 45 28  2  0  0  0  0
 29 46  1  1  0  0  0
 47 32  2  0  0  0  0
 35 48  1  4  0  0  0
 49 36  2  0  0  0  0
 50 37  2  0  0  0  0
 51 38  2  0  0  0  0
 52 39  2  0  0  0  0
 53 27  1  0  0  0  0
 53 28  1  0  0  0  0
 24 54  1  6  0  0  0
 25 55  1  6  0  0  0
 26 56  1  1  0  0  0
 27 57  1  6  0  0  0
 29 58  1  6  0  0  0
 30 59  1  1  0  0  0
 31 60  1  6  0  0  0
 33 61  1  1  0  0  0
 34 62  1  6  0  0  0
M  END


  Mrv1652305152117032D          

 62 63  0  0  1  0            999 V2000
   10.0509    2.1530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1956   -0.3220    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.9101    0.9155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.9101    4.2155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6246    5.4530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9088    2.9780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.3377    2.9780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.2612    5.3099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.0535    2.1530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.7680    0.9155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7667    2.9780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.0535    2.9780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7654    1.7405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4798    2.1530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1943    1.7405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.3381    6.7780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.7861    7.3911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4811    0.9155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.6233    1.7405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.4660    6.7226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.3861    5.9380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1956    0.5030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6246    4.6280    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9088    2.1530    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   14.3377    2.1530    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   22.9256    6.0635    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   19.3390    1.7405    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   20.0535    0.5030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.6410    6.7226    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.4811    1.7405    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   20.7209    5.9380    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   22.0324    7.0555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6246    2.1530    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   19.3390    4.2155    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   17.1956    2.1530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0522    1.7405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.5056    5.6830    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6246    2.9780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.0535    4.6280    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.9101    1.7405    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   15.7667    2.1530    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   19.3390    3.3905    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   20.0535    5.4530    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   22.1187    6.2351    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   20.0535   -0.3220    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.1561    7.3900    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.3179    7.4680    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.1956    2.9780    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.0522    0.9155    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.6771    4.8761    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.9101    3.3905    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.7680    4.2155    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.3390    0.9155    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.1943    2.5655    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6233    2.5655    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   22.4064    5.4224    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.3390    2.5655    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.8262    6.5935    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.1956    1.3280    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   20.8500    5.1231    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.6246    1.3280    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.3390    5.0405    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
 13  1  1  0  0  0  0
 14 13  1  0  0  0  0
 15 14  1  0  0  0  0
 17 16  2  0  0  0  0
 22  2  1  0  0  0  0
 22  3  1  0  0  0  0
 22 18  2  0  0  0  0
 23  4  1  0  0  0  0
 23  5  1  0  0  0  0
 24  6  1  1  0  0  0
 24 15  1  0  0  0  0
 24 19  1  0  0  0  0
 25  7  1  1  0  0  0
 25 19  1  0  0  0  0
 26  8  1  6  0  0  0
 26 16  1  0  0  0  0
 27  9  1  1  0  0  0
 28 10  1  0  0  0  0
 29 20  1  0  0  0  0
 29 21  1  0  0  0  0
 30 18  1  0  0  0  0
 31 20  1  0  0  0  0
 32 17  1  0  0  0  0
 33 27  1  0  0  0  0
 34 23  1  0  0  0  0
 35 30  1  0  0  0  0
 36 25  1  0  0  0  0
 31 37  1  1  0  0  0
 38 33  1  0  0  0  0
 39 34  1  0  0  0  0
 33 40  1  6  0  0  0
 40 35  2  0  0  0  0
 41 11  1  0  0  0  0
 30 41  1  1  0  0  0
 41 36  1  0  0  0  0
 42 12  1  0  0  0  0
 34 42  1  6  0  0  0
 42 38  1  0  0  0  0
 43 21  1  0  0  0  0
 43 31  1  0  0  0  0
 43 39  1  0  0  0  0
 44 26  1  0  0  0  0
 44 32  1  0  0  0  0
 44 37  1  0  0  0  0
 45 28  2  0  0  0  0
 29 46  1  1  0  0  0
 47 32  2  0  0  0  0
 35 48  1  4  0  0  0
 49 36  2  0  0  0  0
 50 37  2  0  0  0  0
 51 38  2  0  0  0  0
 52 39  2  0  0  0  0
 53 27  1  0  0  0  0
 53 28  1  0  0  0  0
 24 54  1  6  0  0  0
 25 55  1  6  0  0  0
 26 56  1  1  0  0  0
 27 57  1  6  0  0  0
 29 58  1  6  0  0  0
 30 59  1  1  0  0  0
 31 60  1  6  0  0  0
 33 61  1  1  0  0  0
 34 62  1  6  0  0  0
M  END
> <DATABASE_ID>
MMDBc0025334

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@](C)(CCCC)C[C@@]([H])(C)C(=O)N(C)[C@@]([H])(C=C(C)C)C(O)=N[C@]([H])(C(=O)N(C)[C@@]([H])(C(C)C)C(=O)N1C[C@@]([H])(O)C[C@@]1([H])C(=O)N1C(=O)C=C[C@]1([H])C)[C@@]([H])(C)OC(C)=O

> <INCHI_IDENTIFIER>
InChI=1S/C39H63N5O9/c1-13-14-15-24(6)19-25(7)36(49)41(11)30(18-22(2)3)35(48)40-33(27(9)53-28(10)45)38(51)42(12)34(23(4)5)39(52)43-21-29(46)20-31(43)37(50)44-26(8)16-17-32(44)47/h16-18,23-27,29-31,33-34,46H,13-15,19-21H2,1-12H3,(H,40,48)/t24-,25-,26+,27-,29+,30+,31+,33+,34+/m1/s1

> <INCHI_KEY>
KRHBBIAEHFFEMF-PLBHUYDJSA-N

> <FORMULA>
C39H63N5O9

> <MOLECULAR_WEIGHT>
745.959

> <EXACT_MASS>
745.462578629

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
116

> <JCHEM_AVERAGE_POLARIZABILITY>
81.15095944793501

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-N-[(1S,2R)-2-(acetyloxy)-1-{[(2S)-1-[(2S,4S)-4-hydroxy-2-[(2S)-2-methyl-5-oxo-2,5-dihydro-1H-pyrrole-1-carbonyl]pyrrolidin-1-yl]-3-methyl-1-oxobutan-2-yl](methyl)carbamoyl}propyl]-4-methyl-2-[(2R,4R)-N,2,4-trimethyloctanamido]pent-3-enimidic acid

> <ALOGPS_LOGP>
3.96

> <JCHEM_LOGP>
3.6812615866666656

> <ALOGPS_LOGS>
-4.90

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.481248053409182

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.334715103568704

> <JCHEM_PKA_STRONGEST_BASIC>
0.44023476864051303

> <JCHEM_POLAR_SURFACE_AREA>
177.42999999999998

> <JCHEM_REFRACTIVITY>
200.9278000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
18

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.35e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-N-[(1S,2R)-2-(acetyloxy)-1-{[(2S)-1-[(2S,4S)-4-hydroxy-2-[(2S)-2-methyl-5-oxo-2H-pyrrole-1-carbonyl]pyrrolidin-1-yl]-3-methyl-1-oxobutan-2-yl](methyl)carbamoyl}propyl]-4-methyl-2-[(2R,4R)-N,2,4-trimethyloctanamido]pent-3-enimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0      18.762   4.019   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      32.098  -0.601   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      33.432   1.709   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      33.432   7.869   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      34.766  10.179   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      24.096   5.559   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      26.764   5.559   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      43.421   9.912   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      37.433   4.019   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      38.767   1.709   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      29.431   5.559   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      37.433   5.559   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      20.095   3.249   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      21.429   4.019   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      22.763   3.249   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      43.565  12.652   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      42.534  13.797   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      30.765   1.709   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      25.430   3.249   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      38.203  12.549   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      36.187  11.084   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      32.098   0.939   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      34.766   8.639   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      24.096   4.019   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      26.764   4.019   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      42.795  11.319   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      36.100   3.249   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      37.433   0.939   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      36.663  12.549   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      30.765   3.249   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      38.679  11.084   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      41.127  13.170   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      34.766   4.019   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      36.100   7.869   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      32.098   4.019   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      28.097   3.249   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      40.144  10.608   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      34.766   5.559   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      37.433   8.639   0.000  0.00  0.00           C+0
HETATM   40  N   UNK     0      33.432   3.249   0.000  0.00  0.00           N+0
HETATM   41  N   UNK     0      29.431   4.019   0.000  0.00  0.00           N+0
HETATM   42  N   UNK     0      36.100   6.329   0.000  0.00  0.00           N+0
HETATM   43  N   UNK     0      37.433  10.179   0.000  0.00  0.00           N+0
HETATM   44  N   UNK     0      41.288  11.639   0.000  0.00  0.00           N+0
HETATM   45  O   UNK     0      37.433  -0.601   0.000  0.00  0.00           O+0
HETATM   46  O   UNK     0      35.758  13.795   0.000  0.00  0.00           O+0
HETATM   47  O   UNK     0      39.794  13.940   0.000  0.00  0.00           O+0
HETATM   48  O   UNK     0      32.098   5.559   0.000  0.00  0.00           O+0
HETATM   49  O   UNK     0      28.097   1.709   0.000  0.00  0.00           O+0
HETATM   50  O   UNK     0      40.464   9.102   0.000  0.00  0.00           O+0
HETATM   51  O   UNK     0      33.432   6.329   0.000  0.00  0.00           O+0
HETATM   52  O   UNK     0      38.767   7.869   0.000  0.00  0.00           O+0
HETATM   53  O   UNK     0      36.100   1.709   0.000  0.00  0.00           O+0
HETATM   54  H   UNK     0      22.763   4.789   0.000  0.00  0.00           H+0
HETATM   55  H   UNK     0      25.430   4.789   0.000  0.00  0.00           H+0
HETATM   56  H   UNK     0      41.825  10.122   0.000  0.00  0.00           H+0
HETATM   57  H   UNK     0      36.100   4.789   0.000  0.00  0.00           H+0
HETATM   58  H   UNK     0      35.142  12.308   0.000  0.00  0.00           H+0
HETATM   59  H   UNK     0      32.098   2.479   0.000  0.00  0.00           H+0
HETATM   60  H   UNK     0      38.920   9.563   0.000  0.00  0.00           H+0
HETATM   61  H   UNK     0      34.766   2.479   0.000  0.00  0.00           H+0
HETATM   62  H   UNK     0      36.100   9.409   0.000  0.00  0.00           H+0
CONECT    1   13                                                            
CONECT    2   22                                                            
CONECT    3   22                                                            
CONECT    4   23                                                            
CONECT    5   23                                                            
CONECT    6   24                                                            
CONECT    7   25                                                            
CONECT    8   26                                                            
CONECT    9   27                                                            
CONECT   10   28                                                            
CONECT   11   41                                                            
CONECT   12   42                                                            
CONECT   13    1   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   24                                                       
CONECT   16   17   26                                                       
CONECT   17   16   32                                                       
CONECT   18   22   30                                                       
CONECT   19   24   25                                                       
CONECT   20   29   31                                                       
CONECT   21   29   43                                                       
CONECT   22    2    3   18                                                  
CONECT   23    4    5   34                                                  
CONECT   24    6   15   19   54                                             
CONECT   25    7   19   36   55                                             
CONECT   26    8   16   44   56                                             
CONECT   27    9   33   53   57                                             
CONECT   28   10   45   53                                                  
CONECT   29   20   21   46   58                                             
CONECT   30   18   35   41   59                                             
CONECT   31   20   37   43   60                                             
CONECT   32   17   44   47                                                  
CONECT   33   27   38   40   61                                             
CONECT   34   23   39   42   62                                             
CONECT   35   30   40   48                                                  
CONECT   36   25   41   49                                                  
CONECT   37   31   44   50                                                  
CONECT   38   33   42   51                                                  
CONECT   39   34   43   52                                                  
CONECT   40   33   35                                                       
CONECT   41   11   30   36                                                  
CONECT   42   12   34   38                                                  
CONECT   43   21   31   39                                                  
CONECT   44   26   32   37                                                  
CONECT   45   28                                                            
CONECT   46   29                                                            
CONECT   47   32                                                            
CONECT   48   35                                                            
CONECT   49   36                                                            
CONECT   50   37                                                            
CONECT   51   38                                                            
CONECT   52   39                                                            
CONECT   53   27   28                                                       
CONECT   54   24                                                            
CONECT   55   25                                                            
CONECT   56   26                                                            
CONECT   57   27                                                            
CONECT   58   29                                                            
CONECT   59   30                                                            
CONECT   60   31                                                            
CONECT   61   33                                                            
CONECT   62   34                                                            
MASTER        0    0    0    0    0    0    0    0   62    0  126    0
END

Synonyms

Not Available

Molecular Formula

C₃₉H₆₃N₅O₉

Average Mass

745.959

Monoisotopic Mass

745.462578629

IUPAC Name

(2S)-N-[(1S,2R)-2-(acetyloxy)-1-{[(2S)-1-[(2S,4S)-4-hydroxy-2-[(2S)-2-methyl-5-oxo-2,5-dihydro-1H-pyrrole-1-carbonyl]pyrrolidin-1-yl]-3-methyl-1-oxobutan-2-yl](methyl)carbamoyl}propyl]-4-methyl-2-[(2R,4R)-N,2,4-trimethyloctanamido]pent-3-enimidic acid

Traditional Name

(2S)-N-[(1S,2R)-2-(acetyloxy)-1-{[(2S)-1-[(2S,4S)-4-hydroxy-2-[(2S)-2-methyl-5-oxo-2H-pyrrole-1-carbonyl]pyrrolidin-1-yl]-3-methyl-1-oxobutan-2-yl](methyl)carbamoyl}propyl]-4-methyl-2-[(2R,4R)-N,2,4-trimethyloctanamido]pent-3-enimidic acid

CAS Registry Number

Not Available

SMILES

[H][C@@](C)(CCCC)C[C@@]([H])(C)C(=O)N(C)[C@@]([H])(C=C(C)C)C(O)=N[C@]([H])(C(=O)N(C)[C@@]([H])(C(C)C)C(=O)N1C[C@@]([H])(O)C[C@@]1([H])C(=O)N1C(=O)C=C[C@]1([H])C)[C@@]([H])(C)OC(C)=O

InChI Identifier

InChI=1S/C39H63N5O9/c1-13-14-15-24(6)19-25(7)36(49)41(11)30(18-22(2)3)35(48)40-33(27(9)53-28(10)45)38(51)42(12)34(23(4)5)39(52)43-21-29(46)20-31(43)37(50)44-26(8)16-17-32(44)47/h16-18,23-27,29-31,33-34,46H,13-15,19-21H2,1-12H3,(H,40,48)/t24-,25-,26+,27-,29+,30+,31+,33+,34+/m1/s1

InChI Key

KRHBBIAEHFFEMF-PLBHUYDJSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Peptidomimetics

Sub Class

Hybrid peptides

Direct Parent

Hybrid peptides

Alternative Parents

Substituents

Hybrid peptide
Valine or derivatives
N-acyl-alpha amino acid or derivatives
Alpha-amino acid amide
Alpha-amino acid or derivatives
Pyrrolidine-2-carboxamide
Pyrrolidine carboxylic acid or derivatives
N-acylpyrrolidine
Carboxylic acid imide, n-substituted
N-acyl-amine
Tertiary carboxylic acid amide
Pyrroline
Pyrrolidine
Dicarboximide
Carboxylic acid imide
Secondary alcohol
Carboxylic acid ester
Carboxamide group
Azacycle
Organoheterocyclic compound
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Carboximidic acid derivative
Carboximidic acid
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.0094 g/L	ALOGPS
logP	3.96	ALOGPS
logP	3.68	ChemAxon
logS	-4.9	ALOGPS
pKa (Strongest Acidic)	4.33	ChemAxon
pKa (Strongest Basic)	0.44	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	177.43 Å²	ChemAxon
Rotatable Bond Count	18	ChemAxon
Refractivity	200.93 m³·mol⁻¹	ChemAxon
Polarizability	81.15 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-09	View Spectrum
MS	Mass Spectrum (Electron Ionization)	Not Available	2022-08-06	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-21	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-21	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-23	32.5
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	79.7
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-23	751.3
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	765.2
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	707.1
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (void)	2025-10-23	135.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	3775.5
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (void)	2025-10-23	131.1
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	350.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	588.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	140.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	139.9
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	255.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	9.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	97.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	164.3
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	572.6
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	2211.9
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	1560.3

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	Microcolin F_TMS_1	CCCC[C@@H](C)C[C@@H](C)C(=O)N(C)[C@@H](C=C(C)C)C(=N[C@H](C(=O)N(C)[C@H](C(=O)N1C[C@@H](O)C[C@H]1C(=O)N1C(=O)C=C[C@@H]1C)C(C)C)[C@@H](C)OC(C)=O)O[Si](C)(C)C	standard non polar	2025-10-23	1067.23
Gas Chromatography	Microcolin F_TMS_2	CCCC[C@@H](C)C[C@@H](C)C(=O)N(C)[C@@H](C=C(C)C)C(O)=N[C@H](C(=O)N(C)[C@H](C(=O)N1C[C@@H](O[Si](C)(C)C)C[C@H]1C(=O)N1C(=O)C=C[C@@H]1C)C(C)C)[C@@H](C)OC(C)=O	standard non polar	2025-10-23	2935.76
Gas Chromatography	Microcolin F_TMS_3	CCCC[C@@H](C)C[C@@H](C)C(=O)N(C)[C@@H](C=C(C)C)C(=N[C@H](C(=O)N(C)[C@H](C(=O)N1C[C@@H](O[Si](C)(C)C)C[C@H]1C(=O)N1C(=O)C=C[C@@H]1C)C(C)C)[C@@H](C)OC(C)=O)O[Si](C)(C)C	standard non polar	2025-10-23	1913.4
Gas Chromatography	Microcolin F_TMS_1	CCCC[C@@H](C)C[C@@H](C)C(=O)N(C)[C@@H](C=C(C)C)C(=N[C@H](C(=O)N(C)[C@H](C(=O)N1C[C@@H](O)C[C@H]1C(=O)N1C(=O)C=C[C@@H]1C)C(C)C)[C@@H](C)OC(C)=O)O[Si](C)(C)C	standard polar	2025-10-23	2864.07
Gas Chromatography	Microcolin F_TMS_2	CCCC[C@@H](C)C[C@@H](C)C(=O)N(C)[C@@H](C=C(C)C)C(O)=N[C@H](C(=O)N(C)[C@H](C(=O)N1C[C@@H](O[Si](C)(C)C)C[C@H]1C(=O)N1C(=O)C=C[C@@H]1C)C(C)C)[C@@H](C)OC(C)=O	standard polar	2025-10-23	801.385
Gas Chromatography	Microcolin F_TMS_3	CCCC[C@@H](C)C[C@@H](C)C(=O)N(C)[C@@H](C=C(C)C)C(=N[C@H](C(=O)N(C)[C@H](C(=O)N1C[C@@H](O[Si](C)(C)C)C[C@H]1C(=O)N1C(=O)C=C[C@@H]1C)C(C)C)[C@@H](C)OC(C)=O)O[Si](C)(C)C	standard polar	2025-10-23	376.583

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Cyanobacteria	1	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

81163318

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139291932

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Microcolin F (MMDBc0025334)

MOL for #<Metabolite:0x00007f9aca1c92f8>

3D MOL for #<Metabolite:0x00007f9aca1c92f8>

3D SDF for #<Metabolite:0x00007f9aca1c92f8>

3D-SDF for #<Metabolite:0x00007f9aca1c92f8>

PDB for #<Metabolite:0x00007f9aca1c92f8>

3D PDB for #<Metabolite:0x00007f9aca1c92f8>

SMILES for #<Metabolite:0x00007f9aca1c92f8>

INCHI for #<Metabolite:0x00007f9aca1c92f8>

Structure for #<Metabolite:0x00007f9aca1c92f8>

3D Structure for #<Metabolite:0x00007f9aca1c92f8>