MiMeDB: Showing metabocard for Trichobrasilenol (MMDBc0025548)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 15:17:48 UTC

Update Date

2025-10-07 16:07:32 UTC

Metabolite ID

MMDBc0025548

Metabolite Identification

Common Name

Trichobrasilenol

Description

Trichobrasilenol is a brasilane-type sesquiterpene, belonging to the chemical class of terpenes. Its chemical structure is derived from farnesyl diphosphate (FPP) through a unique skeletal rearrangement, which involves a multistep carbocation cascade where cyclopropylcarbinyl cations and homoallyl cations are key intermediates (PMID:31418991 , PMID:33124823 ). The biosynthesis of trichobrasilenol has been characterized through isotopic labeling experiments, revealing a plausible pathway that highlights the complexity of its formation (PMID:33124823 ). Additionally, computational chemistry has been utilized to explore various terpene compounds, including trichobrasilenol, providing insights into its biosynthetic mechanisms (PMID:38825452 ). The unusual skeletal rearrangement that leads to trichobrasilenol production emphasizes the intricate enzymatic processes involved in sesquiterpene biosynthesis, showcasing the diversity of metabolic pathways in organisms like Trichoderma (PMID:31418991 ). Overall, trichobrasilenol exemplifies the fascinating chemistry underlying terpene biosynthesis and the potential for novel structural configurations arising from unique enzymatic transformations.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152117172D          

 19 20  0  0  1  0            999 V2000
    0.8838    0.7541    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -2.7604    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6345    0.4898    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1648   -0.4287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -1.3654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -2.7604    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -0.0305    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6378   -2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -1.1104    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9233   -0.2854    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6378   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668   -2.3479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7221    0.5529    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8371   -1.9309    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -0.6979    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  5  1  0  0  0  0
 10  1  1  6  0  0  0
 10  5  1  0  0  0  0
 11  2  1  0  0  0  0
 11  9  1  0  0  0  0
 12  6  1  0  0  0  0
 13  7  1  0  0  0  0
 13 10  1  0  0  0  0
 13 12  1  0  0  0  0
 14  8  1  0  0  0  0
 14 11  2  0  0  0  0
 14 12  1  0  0  0  0
 15  3  1  0  0  0  0
 15  4  1  0  0  0  0
 15  7  1  0  0  0  0
 15  8  1  0  0  0  0
 16  9  1  0  0  0  0
 10 17  1  1  0  0  0
 12 18  1  6  0  0  0
 13 19  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0025548

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@]1(C)CC[C@]2([H])\C(CC(C)(C)C[C@@]12[H])=C(/C)CO

> <INCHI_IDENTIFIER>
InChI=1S/C15H26O/c1-10-5-6-12-13(10)7-15(3,4)8-14(12)11(2)9-16/h10,12-13,16H,5-9H2,1-4H3/b14-11+/t10-,12-,13-/m0/s1

> <INCHI_KEY>
DJBXKQSFHIRXRM-JRYBIPSHSA-N

> <FORMULA>
C15H26O

> <MOLECULAR_WEIGHT>
222.372

> <EXACT_MASS>
222.198365457

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
27.686978102208446

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(1S,3aS,4E,7aS)-1,6,6-trimethyl-octahydro-1H-inden-4-ylidene]propan-1-ol

> <ALOGPS_LOGP>
3.80

> <JCHEM_LOGP>
3.3849766526666665

> <ALOGPS_LOGS>
-3.52

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.882092301362484

> <JCHEM_PKA_STRONGEST_BASIC>
-1.9755728273840498

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
69.13059999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.76e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[(1S,3aS,4E,7aS)-1,6,6-trimethyl-hexahydro-1H-inden-4-ylidene]propan-1-ol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       1.650   1.408   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.590  -5.153   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.784   0.914   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.774  -0.800   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.220  -1.303   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.126  -2.549   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.924   0.237   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.258  -2.073   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.258  -5.153   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.126  -0.057   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.924  -4.383   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.590  -2.073   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.590  -0.533   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.924  -2.843   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.258  -0.533   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       7.591  -4.383   0.000  0.00  0.00           O+0
HETATM   17  H   UNK     0       3.215   1.032   0.000  0.00  0.00           H+0
HETATM   18  H   UNK     0       3.429  -3.604   0.000  0.00  0.00           H+0
HETATM   19  H   UNK     0       4.924  -1.303   0.000  0.00  0.00           H+0
CONECT    1   10                                                            
CONECT    2   11                                                            
CONECT    3   15                                                            
CONECT    4   15                                                            
CONECT    5    6   10                                                       
CONECT    6    5   12                                                       
CONECT    7   13   15                                                       
CONECT    8   14   15                                                       
CONECT    9   11   16                                                       
CONECT   10    1    5   13   17                                             
CONECT   11    2    9   14                                                  
CONECT   12    6   13   14   18                                             
CONECT   13    7   10   12   19                                             
CONECT   14    8   11   12                                                  
CONECT   15    3    4    7    8                                             
CONECT   16    9                                                            
CONECT   17   10                                                            
CONECT   18   12                                                            
CONECT   19   13                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   40    0
END

Synonyms

Value	Source
2-[(1S,3AS,4E,7as)-1,6,6-trimethyl-hexahydro-1H-inden-4-ylidene]propan-1-ol	ChEBI
2-[(1S,3AS,4E,7as)-1,6,6-trimethyl-octahydro-1H-inden-4-ylidene]propan-1-ol	ChEBI

Molecular Formula

C₁₅H₂₆O

Average Mass

222.372

Monoisotopic Mass

222.198365457

IUPAC Name

2-[(1S,3aS,4E,7aS)-1,6,6-trimethyl-octahydro-1H-inden-4-ylidene]propan-1-ol

Traditional Name

2-[(1S,3aS,4E,7aS)-1,6,6-trimethyl-hexahydro-1H-inden-4-ylidene]propan-1-ol

CAS Registry Number

Not Available

SMILES

[H][C@]1(C)CC[C@]2([H])\C(CC(C)(C)C[C@@]12[H])=C(/C)CO

InChI Identifier

InChI=1S/C15H26O/c1-10-5-6-12-13(10)7-15(3,4)8-14(12)11(2)9-16/h10,12-13,16H,5-9H2,1-4H3/b14-11+/t10-,12-,13-/m0/s1

InChI Key

DJBXKQSFHIRXRM-JRYBIPSHSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Brasilane sesquiterpenoid
Sesquiterpenoid
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.068 g/L	ALOGPS
logP	3.8	ALOGPS
logP	3.38	ChemAxon
logS	-3.5	ALOGPS
pKa (Strongest Acidic)	16.88	ChemAxon
pKa (Strongest Basic)	-2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	69.13 m³·mol⁻¹	ChemAxon
Polarizability	27.69 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	2	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

146682173

PDB ID

Not Available

ChEBI ID

167379

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for Trichobrasilenol (MMDBc0025548)

MOL for #<Metabolite:0x00007f8d96003428>

3D MOL for #<Metabolite:0x00007f8d96003428>

3D SDF for #<Metabolite:0x00007f8d96003428>

3D-SDF for #<Metabolite:0x00007f8d96003428>

PDB for #<Metabolite:0x00007f8d96003428>

3D PDB for #<Metabolite:0x00007f8d96003428>

SMILES for #<Metabolite:0x00007f8d96003428>

INCHI for #<Metabolite:0x00007f8d96003428>

Structure for #<Metabolite:0x00007f8d96003428>

3D Structure for #<Metabolite:0x00007f8d96003428>