MiMeDB: Showing metabocard for 4,5-didehydroacaterin (MMDBc0028248)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 17:53:03 UTC

Update Date

2025-10-07 16:07:50 UTC

Metabolite ID

MMDBc0028248

Metabolite Identification

Common Name

4,5-didehydroacaterin

Description

4,5-didehydroacaterin is a natural product belonging to the class of metabolites known as furanones. Its chemical structure features a furan ring and a conjugated double bond system, which contribute to its reactivity and biological activity. This compound has been isolated and characterized through spectroscopic methods, revealing its unique configuration as (+)-4,5-didehydroacaterin. In biological contexts, it has been shown to influence cellular processes; specifically, it accelerates the mitotic process in the organism A. (PMID:17587701 ). The presence of 4,5-didehydroacaterin in metabolic pathways suggests potential roles in regulating cell division and growth, although further research is needed to elucidate its mechanisms of action and broader biological implications.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152119532D          

 17 17  0  0  1  0            999 V2000
   -3.1255    5.6386    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7164    5.8299    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4110    5.2261    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6966    5.6386    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9821    5.2261    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2676    5.6386    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4468    5.2261    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1613    5.6386    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3439    5.3031    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8960    5.9162    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5902    5.6386    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8758    5.2261    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6765    6.4591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8758    4.4011    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0634    7.0111    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4835    6.6306    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8758    6.0511    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
 10  2  2  0  0  0  0
 10  9  1  0  0  0  0
 11  9  2  0  0  0  0
 12  8  1  0  0  0  0
 12 11  1  0  0  0  0
 13 11  1  0  0  0  0
 12 14  1  1  0  0  0
 15 13  2  0  0  0  0
 16 10  1  0  0  0  0
 16 13  1  0  0  0  0
 12 17  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0028248

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@](O)(CCCCCCC)C1=CC(=C)OC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C13H20O3/c1-3-4-5-6-7-8-12(14)11-9-10(2)16-13(11)15/h9,12,14H,2-8H2,1H3/t12-/m1/s1

> <INCHI_KEY>
MOUUOAIBUXWVBM-GFCCVEGCSA-N

> <FORMULA>
C13H20O3

> <MOLECULAR_WEIGHT>
224.3

> <EXACT_MASS>
224.141244504

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
25.774944504669836

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-[(1R)-1-hydroxyoctyl]-5-methylidene-2,5-dihydrofuran-2-one

> <ALOGPS_LOGP>
3.36

> <JCHEM_LOGP>
3.033541487999999

> <ALOGPS_LOGS>
-2.98

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.294321640518422

> <JCHEM_PKA_STRONGEST_BASIC>
-3.107463714437242

> <JCHEM_POLAR_SURFACE_AREA>
46.53

> <JCHEM_REFRACTIVITY>
64.08970000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.33e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-[(1R)-1-hydroxyoctyl]-5-methylidenefuran-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0      -5.834  10.525   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.804  10.883   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.501   9.755   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.167  10.525   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.833   9.755   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.500  10.525   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.834   9.755   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.168  10.525   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.242   9.899   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.272  11.044   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.835  10.525   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.501   9.755   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.996  12.057   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       3.501   8.215   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       3.852  13.087   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0       6.502  12.377   0.000  0.00  0.00           O+0
HETATM   17  H   UNK     0       3.501  11.295   0.000  0.00  0.00           H+0
CONECT    1    3                                                            
CONECT    2   10                                                            
CONECT    3    1    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7   12                                                       
CONECT    9   10   11                                                       
CONECT   10    2    9   16                                                  
CONECT   11    9   12   13                                                  
CONECT   12    8   11   14   17                                             
CONECT   13   11   15   16                                                  
CONECT   14   12                                                            
CONECT   15   13                                                            
CONECT   16   10   13                                                       
CONECT   17   12                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   34    0
END

Synonyms

Not Available

Molecular Formula

C₁₃H₂₀O₃

Average Mass

224.3

Monoisotopic Mass

224.141244504

IUPAC Name

3-[(1R)-1-hydroxyoctyl]-5-methylidene-2,5-dihydrofuran-2-one

Traditional Name

3-[(1R)-1-hydroxyoctyl]-5-methylidenefuran-2-one

CAS Registry Number

Not Available

SMILES

[H][C@@](O)(CCCCCCC)C1=CC(=C)OC1=O

InChI Identifier

InChI=1S/C13H20O3/c1-3-4-5-6-7-8-12(14)11-9-10(2)16-13(11)15/h9,12,14H,2-8H2,1H3/t12-/m1/s1

InChI Key

MOUUOAIBUXWVBM-GFCCVEGCSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohols

Direct Parent

Fatty alcohols

Alternative Parents

Substituents

Fatty alcohol
2-furanone
Dihydrofuran
Enol ester
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Carboxylic acid ester
Secondary alcohol
Lactone
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organic oxide
Alcohol
Organic oxygen compound
Organooxygen compound
Carbonyl group
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.23 g/L	ALOGPS
logP	3.36	ALOGPS
logP	3.03	ChemAxon
logS	-3	ALOGPS
pKa (Strongest Acidic)	14.29	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	46.53 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	64.09 m³·mol⁻¹	ChemAxon
Polarizability	25.77 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	1	Human feces; Human	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

62903017

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102121514

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for 4,5-didehydroacaterin (MMDBc0028248)

MOL for #<Metabolite:0x00007f8de8b125b0>

3D MOL for #<Metabolite:0x00007f8de8b125b0>

3D SDF for #<Metabolite:0x00007f8de8b125b0>

3D-SDF for #<Metabolite:0x00007f8de8b125b0>

PDB for #<Metabolite:0x00007f8de8b125b0>

3D PDB for #<Metabolite:0x00007f8de8b125b0>

SMILES for #<Metabolite:0x00007f8de8b125b0>

INCHI for #<Metabolite:0x00007f8de8b125b0>

Structure for #<Metabolite:0x00007f8de8b125b0>

3D Structure for #<Metabolite:0x00007f8de8b125b0>