MiMeDB: Showing metabocard for Berkeleydione (MMDBc0028724)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-05-15 18:28:17 UTC

Update Date

2025-10-07 16:07:51 UTC

Metabolite ID

MMDBc0028724

Metabolite Identification

Common Name

Berkeleydione

Description

Berkeleydione is a meroterpenoid, a class of compounds that combines features of terpenes and polyketides. Its chemical structure is characterized by a complex arrangement, specifically identified as (5aS,7R,9S,11R,11aS)-methyl 9-hydroxy-1,1,5,7,9,11a-hexa-methyl-14-methyl-idene-3,8,10-trioxo-1,3,4,5a,6,7,8,9,10,11,11a,12-dodeca-hydro-7,11-methano-cycloocta-[4,5]cyclo-hepta-[1,2-c]pyran-11-carboxyl-ate, with the molecular formula C26H32O7 (PMID:26029438 ). Berkeleydione is synthesized through a biosynthetic gene cluster in the fungus Penicillium rubrum, where it acts as a key intermediate in the formation of various meroterpenoids (PMID:27602587 ). The compound has been isolated alongside other metabolites, including berkeleytrione, and its structure has been elucidated using mass spectrometry and NMR techniques (PMID:17970594 ). Notably, berkeleydione has demonstrated bioactivity by inhibiting matrix metalloproteinase-3 and caspase-1, as well as showing potential antitumor activity against non-small-cell lung cancer cell lines (PMID:15012097 ). Additionally, its biosynthetic pathway involves unique transformations, such as a retro-Claisen migration of methyl carbonate (PMID:18237180 ).

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152120282D          

 34 37  0  0  1  0            999 V2000
    3.5453    1.9885    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7431    0.3043    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9164   -0.7417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8822   -0.9770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4209    2.5024    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4784   -0.8114    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1141   -0.1581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5579   -2.5894    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9561   -0.6441    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1311   -0.6436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8930    1.3657    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3628    1.5048    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5448    1.1635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0041    0.6711    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2878    0.8050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4709    0.0006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8012    0.8060    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.6812    1.1220    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8597    1.2505    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1141   -0.2525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0559   -1.2501    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2591   -0.2431    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5586    1.6890    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6171    0.0018    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6756    0.4463    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9183   -0.4366    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.2863    1.6828    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1872    1.7284    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6362   -0.9250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8292   -1.5376    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0535    0.8323    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4203   -1.7760    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8642    0.3176    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4732    0.3273    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
 10  9  1  0  0  0  0
 13  1  1  0  0  0  0
 14  2  2  0  0  0  0
 15 11  1  0  0  0  0
 15 13  2  0  0  0  0
 16  9  2  0  0  0  0
 16 15  1  0  0  0  0
 17 12  1  0  0  0  0
 17 13  1  0  0  0  0
 18 11  1  0  0  0  0
 22  3  1  0  0  0  0
 22  4  1  0  0  0  0
 22 16  1  0  0  0  0
 23  5  1  1  0  0  0
 23 12  1  0  0  0  0
 23 14  1  0  0  0  0
 23 19  1  0  0  0  0
 24  6  1  1  0  0  0
 24 10  1  0  0  0  0
 24 17  1  0  0  0  0
 25  7  1  6  0  0  0
 25 19  1  0  0  0  0
 25 20  1  0  0  0  0
 26 14  1  0  0  0  0
 26 20  1  0  0  0  0
 26 21  1  1  0  0  0
 26 24  1  0  0  0  0
 27 18  2  0  0  0  0
 28 19  2  0  0  0  0
 29 20  2  0  0  0  0
 30 21  2  0  0  0  0
 25 31  1  1  0  0  0
 32  8  1  0  0  0  0
 32 21  1  0  0  0  0
 33 18  1  0  0  0  0
 33 22  1  0  0  0  0
 17 34  1  6  0  0  0
M  END


  Mrv1652305152120282D          

 34 37  0  0  1  0            999 V2000
    3.5453    1.9885    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7431    0.3043    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9164   -0.7417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8822   -0.9770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4209    2.5024    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4784   -0.8114    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1141   -0.1581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5579   -2.5894    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9561   -0.6441    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1311   -0.6436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8930    1.3657    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3628    1.5048    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5448    1.1635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0041    0.6711    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2878    0.8050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4709    0.0006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8012    0.8060    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.6812    1.1220    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8597    1.2505    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1141   -0.2525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0559   -1.2501    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2591   -0.2431    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5586    1.6890    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6171    0.0018    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6756    0.4463    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9183   -0.4366    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.2863    1.6828    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1872    1.7284    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6362   -0.9250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8292   -1.5376    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0535    0.8323    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4203   -1.7760    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8642    0.3176    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4732    0.3273    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
 10  9  1  0  0  0  0
 13  1  1  0  0  0  0
 14  2  2  0  0  0  0
 15 11  1  0  0  0  0
 15 13  2  0  0  0  0
 16  9  2  0  0  0  0
 16 15  1  0  0  0  0
 17 12  1  0  0  0  0
 17 13  1  0  0  0  0
 18 11  1  0  0  0  0
 22  3  1  0  0  0  0
 22  4  1  0  0  0  0
 22 16  1  0  0  0  0
 23  5  1  1  0  0  0
 23 12  1  0  0  0  0
 23 14  1  0  0  0  0
 23 19  1  0  0  0  0
 24  6  1  1  0  0  0
 24 10  1  0  0  0  0
 24 17  1  0  0  0  0
 25  7  1  6  0  0  0
 25 19  1  0  0  0  0
 25 20  1  0  0  0  0
 26 14  1  0  0  0  0
 26 20  1  0  0  0  0
 26 21  1  1  0  0  0
 26 24  1  0  0  0  0
 27 18  2  0  0  0  0
 28 19  2  0  0  0  0
 29 20  2  0  0  0  0
 30 21  2  0  0  0  0
 25 31  1  1  0  0  0
 32  8  1  0  0  0  0
 32 21  1  0  0  0  0
 33 18  1  0  0  0  0
 33 22  1  0  0  0  0
 17 34  1  6  0  0  0
M  END
> <DATABASE_ID>
MMDBc0028724

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@]12C[C@]3(C)C(=C)[C@@](C(=O)OC)(C(=O)[C@@](C)(O)C3=O)[C@@]1(C)CC=C1C(CC(=O)OC1(C)C)=C2C

> <INCHI_IDENTIFIER>
InChI=1S/C26H32O7/c1-13-15-11-18(27)33-22(3,4)16(15)9-10-24(6)17(13)12-23(5)14(2)26(24,21(30)32-8)20(29)25(7,31)19(23)28/h9,17,31H,2,10-12H2,1,3-8H3/t17-,23+,24-,25-,26-/m0/s1

> <INCHI_KEY>
RBGYOLFHIDJTOX-VMXKAMJHSA-N

> <FORMULA>
C26H32O7

> <MOLECULAR_WEIGHT>
456.535

> <EXACT_MASS>
456.21480337

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
65

> <JCHEM_AVERAGE_POLARIZABILITY>
47.77440161905501

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (1R,2S,12S,14R,16S)-16-hydroxy-2,6,6,11,14,16-hexamethyl-18-methylidene-8,15,17-trioxo-7-oxatetracyclo[12.3.1.0^{2,12}.0^{5,10}]octadeca-4,10-diene-1-carboxylate

> <ALOGPS_LOGP>
3.40

> <JCHEM_LOGP>
2.949806659666668

> <ALOGPS_LOGS>
-4.50

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.48223874415579

> <JCHEM_PKA_STRONGEST_BASIC>
-4.337468773306257

> <JCHEM_POLAR_SURFACE_AREA>
106.97000000000001

> <JCHEM_REFRACTIVITY>
121.01249999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.43e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1R,2S,12S,14R,16S)-16-hydroxy-2,6,6,11,14,16-hexamethyl-18-methylidene-8,15,17-trioxo-7-oxatetracyclo[12.3.1.0^{2,12}.0^{5,10}]octadeca-4,10-diene-1-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       6.618   3.712   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.120   0.568   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      11.044  -1.385   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.113  -1.824   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.652   4.671   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.626  -1.515   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.213  -0.295   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.908  -4.834   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.385  -1.202   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.845  -1.201   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.134   2.549   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.411   2.809   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.617   2.172   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.741   1.253   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.004   1.503   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.346   0.001   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.229   1.505   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.605   2.094   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.605   2.334   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.080  -0.471   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.838  -2.333   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.817  -0.454   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.909   3.153   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.885   0.003   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       1.261   0.833   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.581  -0.815   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      11.734   3.141   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0       0.349   3.226   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       1.188  -1.727   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0       5.281  -2.870   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      -0.100   1.554   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0       2.651  -3.315   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0      10.947   0.593   0.000  0.00  0.00           O+0
HETATM   34  H   UNK     0       6.483   0.611   0.000  0.00  0.00           H+0
CONECT    1   13                                                            
CONECT    2   14                                                            
CONECT    3   22                                                            
CONECT    4   22                                                            
CONECT    5   23                                                            
CONECT    6   24                                                            
CONECT    7   25                                                            
CONECT    8   32                                                            
CONECT    9   10   16                                                       
CONECT   10    9   24                                                       
CONECT   11   15   18                                                       
CONECT   12   17   23                                                       
CONECT   13    1   15   17                                                  
CONECT   14    2   23   26                                                  
CONECT   15   11   13   16                                                  
CONECT   16    9   15   22                                                  
CONECT   17   12   13   24   34                                             
CONECT   18   11   27   33                                                  
CONECT   19   23   25   28                                                  
CONECT   20   25   26   29                                                  
CONECT   21   26   30   32                                                  
CONECT   22    3    4   16   33                                             
CONECT   23    5   12   14   19                                             
CONECT   24    6   10   17   26                                             
CONECT   25    7   19   20   31                                             
CONECT   26   14   20   21   24                                             
CONECT   27   18                                                            
CONECT   28   19                                                            
CONECT   29   20                                                            
CONECT   30   21                                                            
CONECT   31   25                                                            
CONECT   32    8   21                                                       
CONECT   33   18   22                                                       
CONECT   34   17                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   74    0
END

Synonyms

Not Available

Molecular Formula

C₂₆H₃₂O₇

Average Mass

456.535

Monoisotopic Mass

456.21480337

IUPAC Name

methyl (1R,2S,12S,14R,16S)-16-hydroxy-2,6,6,11,14,16-hexamethyl-18-methylidene-8,15,17-trioxo-7-oxatetracyclo[12.3.1.0^{2,12}.0^{5,10}]octadeca-4,10-diene-1-carboxylate

Traditional Name

methyl (1R,2S,12S,14R,16S)-16-hydroxy-2,6,6,11,14,16-hexamethyl-18-methylidene-8,15,17-trioxo-7-oxatetracyclo[12.3.1.0^{2,12}.0^{5,10}]octadeca-4,10-diene-1-carboxylate

CAS Registry Number

Not Available

SMILES

[H][C@@]12C[C@]3(C)C(=C)[C@@](C(=O)OC)(C(=O)[C@@](C)(O)C3=O)[C@@]1(C)CC=C1C(CC(=O)OC1(C)C)=C2C

InChI Identifier

InChI=1S/C26H32O7/c1-13-15-11-18(27)33-22(3,4)16(15)9-10-24(6)17(13)12-23(5)14(2)26(24,21(30)32-8)20(29)25(7,31)19(23)28/h9,17,31H,2,10-12H2,1,3-8H3/t17-,23+,24-,25-,26-/m0/s1

InChI Key

RBGYOLFHIDJTOX-VMXKAMJHSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as delta valerolactones. These are cyclic organic compounds containing an oxan-2- one moiety.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Lactones

Sub Class

Delta valerolactones

Direct Parent

Delta valerolactones

Alternative Parents

Substituents

Delta valerolactone
Delta_valerolactone
Acyloin
Dicarboxylic acid or derivatives
Oxane
Cyclic alcohol
Methyl ester
Tertiary alcohol
Carboxylic acid ester
Ketone
Oxacycle
Carboxylic acid derivative
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Alcohol
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

tertiary alcohol (CHEBI:69021 )
organic heterotetracyclic compound (CHEBI:69021 )
methyl ester (CHEBI:69021 )
beta-diketone (CHEBI:69021 )
meroterpenoid (CHEBI:69021 )
cyclic terpene ketone (CHEBI:69021 )
terpene lactone (CHEBI:69021 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.014 g/L	ALOGPS
logP	3.4	ALOGPS
logP	2.95	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Acidic)	11.48	ChemAxon
pKa (Strongest Basic)	-4.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	106.97 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	121.01 m³·mol⁻¹	ChemAxon
Polarizability	47.77 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	2	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

10193089

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Berkeleydione

METLIN ID

Not Available

PubChem Compound

21580417

PDB ID

Not Available

ChEBI ID

69021

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for Berkeleydione (MMDBc0028724)

MOL for #<Metabolite:0x00007fadccba4290>

3D MOL for #<Metabolite:0x00007fadccba4290>

3D SDF for #<Metabolite:0x00007fadccba4290>

3D-SDF for #<Metabolite:0x00007fadccba4290>

PDB for #<Metabolite:0x00007fadccba4290>

3D PDB for #<Metabolite:0x00007fadccba4290>

SMILES for #<Metabolite:0x00007fadccba4290>

INCHI for #<Metabolite:0x00007fadccba4290>

Structure for #<Metabolite:0x00007fadccba4290>

3D Structure for #<Metabolite:0x00007fadccba4290>