MiMeDB: Showing metabocard for Pseudouridine 5'-phosphate (MMDBc0029604)

Microbial

Plant

Animal

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-11-17 23:34:07 UTC

Update Date

2024-04-30 19:38:55 UTC

Metabolite ID

MMDBc0029604

Metabolite Identification

Common Name

Pseudouridine 5'-phosphate

Description

Pseudouridine 5'-phosphate is a member of the chemical class known as Pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms. Pseudouridine 5'-phosphate is an intermediate in pseudouridine degradation pathway. In this pathway, pseudouridine is metabolised to uracil. [BiocycPWY-6019]

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0001271
     RDKit          3D
Pseudouridine 5'-phosphate
 34 35  0  0  0  0  0  0  0  0999 V2000
   -4.4828    2.7658   -1.6486 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7232    1.9334   -1.0482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3975    0.7802   -1.6562 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5968   -0.1292   -1.0581 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0947    0.1098    0.1974 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2197   -0.7730    0.9689 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0032   -0.1245    1.1138 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9928   -0.8725    0.5504 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0262   -0.1033   -0.2117 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6506    0.8063    0.6589 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8066    1.6390   -0.2652 P   0  0  0  0  0  5  0  0  0  0  0  0
    3.3778    1.7292   -1.6941 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2715    0.8035   -0.1508 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9805    3.1780    0.3710 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3264   -1.8664   -0.4060 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1023   -2.9945   -0.5087 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9651   -2.1029    0.3541 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6532   -3.0083    1.3883 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4559    1.3142    0.7911 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0374    1.6138    1.9470 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2480    2.2030    0.1869 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7793    0.6041   -2.6070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3307   -1.0490   -1.5330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6690   -0.8985    1.9834 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5083   -1.4107    1.3743 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7510   -0.8279   -0.6246 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5949    0.4513   -1.0740 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1373   -0.1755   -0.1148 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8331    3.1338    1.3565 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1574   -1.4024   -1.3826 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4307   -3.2832    0.3775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7653   -2.5145   -0.2513 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0051   -2.6404    2.0020 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5305    3.1112    0.6136 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 11 14  1  0
  8 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
  5 19  1  0
 19 20  2  0
 19 21  1  0
 21  2  1  0
 17  6  1  0
  3 22  1  0
  4 23  1  0
  6 24  1  1
  8 25  1  1
  9 26  1  0
  9 27  1  0
 13 28  1  0
 14 29  1  0
 15 30  1  6
 16 31  1  0
 17 32  1  6
 18 33  1  0
 21 34  1  0
M  END


  Mrv1652304282021312D          

 21 22  0  0  0  0            999 V2000
10000.906010001.5423    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9999.120010001.5505    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9998.6112 9999.6953    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10000.6591 9998.4594    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9997.898210000.1057    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9997.1853 9999.6953    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
10003.5096 9998.4594    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9997.5979 9998.9823    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9996.470310000.1078    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9996.7747 9998.9823    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9999.9946 9999.6113    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
10000.662010000.0963    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
10000.407110000.8809    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
 9999.582110000.8809    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
 9999.327210000.0963    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
10002.084710000.1083    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10001.3702 9999.6958    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10001.3702 9998.8707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10002.0847 9998.4583    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
10002.7992 9998.8707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10002.7992 9999.6958    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  8  2  0  0  0  0
  6  9  1  0  0  0  0
  6 10  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 11 12  1  0  0  0  0
 11 15  1  0  0  0  0
 13  1  1  1  0  0  0
 14  2  1  1  0  0  0
 15  3  1  6  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 16 21  1  0  0  0  0
 20 21  1  0  0  0  0
 12 17  1  6  0  0  0
 18  4  2  0  0  0  0
 20  7  2  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0029604

> <DATABASE_NAME>
MIME

> <SMILES>
O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COP(O)(O)=O)C1=CNC(=O)NC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C9H13N2O9P/c12-5-4(2-19-21(16,17)18)20-7(6(5)13)3-1-10-9(15)11-8(3)14/h1,4-7,12-13H,2H2,(H2,16,17,18)(H2,10,11,14,15)/t4-,5-,6-,7+/m1/s1

> <INCHI_KEY>
MOBMOJGXNHLLIR-GBNDHIKLSA-N

> <FORMULA>
C9H13N2O9P

> <MOLECULAR_WEIGHT>
324.1813

> <EXACT_MASS>
324.035866536

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
26.315367273298467

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3S,4R,5S)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}phosphonic acid

> <ALOGPS_LOGP>
-1.86

> <JCHEM_LOGP>
-3.2237138943333337

> <ALOGPS_LOGS>
-1.64

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
6.253241023189858

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.2291145458274322

> <JCHEM_PKA_STRONGEST_BASIC>
-3.648940885134036

> <JCHEM_POLAR_SURFACE_AREA>
174.64999999999998

> <JCHEM_REFRACTIVITY>
63.3139

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.51e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
pseudouridine 5'-phosphate

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0001271
     RDKit          3D
Pseudouridine 5'-phosphate
 34 35  0  0  0  0  0  0  0  0999 V2000
   -4.4828    2.7658   -1.6486 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7232    1.9334   -1.0482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3975    0.7802   -1.6562 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5968   -0.1292   -1.0581 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0947    0.1098    0.1974 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2197   -0.7730    0.9689 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0032   -0.1245    1.1138 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9928   -0.8725    0.5504 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0262   -0.1033   -0.2117 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6506    0.8063    0.6589 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8066    1.6390   -0.2652 P   0  0  0  0  0  5  0  0  0  0  0  0
    3.3778    1.7292   -1.6941 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2715    0.8035   -0.1508 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9805    3.1780    0.3710 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3264   -1.8664   -0.4060 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1023   -2.9945   -0.5087 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9651   -2.1029    0.3541 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6532   -3.0083    1.3883 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4559    1.3142    0.7911 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0374    1.6138    1.9470 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2480    2.2030    0.1869 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7793    0.6041   -2.6070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3307   -1.0490   -1.5330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6690   -0.8985    1.9834 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5083   -1.4107    1.3743 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7510   -0.8279   -0.6246 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5949    0.4513   -1.0740 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1373   -0.1755   -0.1148 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8331    3.1338    1.3565 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1574   -1.4024   -1.3826 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4307   -3.2832    0.3775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7653   -2.5145   -0.2513 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0051   -2.6404    2.0020 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5305    3.1112    0.6136 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 11 14  1  0
  8 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
  5 19  1  0
 19 20  2  0
 19 21  1  0
 21  2  1  0
 17  6  1  0
  3 22  1  0
  4 23  1  0
  6 24  1  1
  8 25  1  1
  9 26  1  0
  9 27  1  0
 13 28  1  0
 14 29  1  0
 15 30  1  6
 16 31  1  0
 17 32  1  6
 18 33  1  0
 21 34  1  0
M  END

HEADER    PROTEIN                                 28-APR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-20         0                                  
HETATM    1  O   UNK     0    8668.3588669.546   0.000  0.00  0.00           O+0
HETATM    2  O   UNK     0    8665.0248669.561   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0    8664.0748666.098   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0    8667.8978663.791   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0    8662.7438666.864   0.000  0.00  0.00           O+0
HETATM    6  P   UNK     0    8661.4138666.098   0.000  0.00  0.00           P+0
HETATM    7  O   UNK     0    8673.2188663.791   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0    8662.1838664.767   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0    8660.0788666.868   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0    8660.6468664.767   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0    8666.6578665.941   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0    8667.9028666.846   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0    8667.4278668.311   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0    8665.8878668.311   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0    8665.4118666.846   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0    8670.5588666.869   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0    8669.2248666.099   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0    8669.2248664.559   0.000  0.00  0.00           C+0
HETATM   19  N   UNK     0    8670.5588663.789   0.000  0.00  0.00           N+0
HETATM   20  C   UNK     0    8671.8928664.559   0.000  0.00  0.00           C+0
HETATM   21  N   UNK     0    8671.8928666.099   0.000  0.00  0.00           N+0
CONECT    1   13                                                            
CONECT    2   14                                                            
CONECT    3    5   15                                                       
CONECT    4   18                                                            
CONECT    5    3    6                                                       
CONECT    6    5    8    9   10                                             
CONECT    7   20                                                            
CONECT    8    6                                                            
CONECT    9    6                                                            
CONECT   10    6                                                            
CONECT   11   12   15                                                       
CONECT   12   13   11   17                                                  
CONECT   13   12   14    1                                                  
CONECT   14   13   15    2                                                  
CONECT   15   14   11    3                                                  
CONECT   16   17   21                                                       
CONECT   17   16   18   12                                                  
CONECT   18   17   19    4                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21    7                                                  
CONECT   21   16   20                                                       
MASTER        0    0    0    0    0    0    0    0   21    0   44    0
END

COMPND    HMDB0001271
HETATM    1  O1  UNL     1      -4.483   2.766  -1.649  1.00  0.00           O  
HETATM    2  C1  UNL     1      -3.723   1.933  -1.048  1.00  0.00           C  
HETATM    3  N1  UNL     1      -3.398   0.780  -1.656  1.00  0.00           N  
HETATM    4  C2  UNL     1      -2.597  -0.129  -1.058  1.00  0.00           C  
HETATM    5  C3  UNL     1      -2.095   0.110   0.197  1.00  0.00           C  
HETATM    6  C4  UNL     1      -1.220  -0.773   0.969  1.00  0.00           C  
HETATM    7  O2  UNL     1      -0.003  -0.124   1.114  1.00  0.00           O  
HETATM    8  C5  UNL     1       0.993  -0.873   0.550  1.00  0.00           C  
HETATM    9  C6  UNL     1       2.026  -0.103  -0.212  1.00  0.00           C  
HETATM   10  O3  UNL     1       2.651   0.806   0.659  1.00  0.00           O  
HETATM   11  P1  UNL     1       3.807   1.639  -0.265  1.00  0.00           P  
HETATM   12  O4  UNL     1       3.378   1.729  -1.694  1.00  0.00           O  
HETATM   13  O5  UNL     1       5.271   0.803  -0.151  1.00  0.00           O  
HETATM   14  O6  UNL     1       3.980   3.178   0.371  1.00  0.00           O  
HETATM   15  C7  UNL     1       0.326  -1.866  -0.406  1.00  0.00           C  
HETATM   16  O7  UNL     1       1.102  -2.995  -0.509  1.00  0.00           O  
HETATM   17  C8  UNL     1      -0.965  -2.103   0.354  1.00  0.00           C  
HETATM   18  O8  UNL     1      -0.653  -3.008   1.388  1.00  0.00           O  
HETATM   19  C9  UNL     1      -2.456   1.314   0.791  1.00  0.00           C  
HETATM   20  O9  UNL     1      -2.037   1.614   1.947  1.00  0.00           O  
HETATM   21  N2  UNL     1      -3.248   2.203   0.187  1.00  0.00           N  
HETATM   22  H1  UNL     1      -3.779   0.604  -2.607  1.00  0.00           H  
HETATM   23  H2  UNL     1      -2.331  -1.049  -1.533  1.00  0.00           H  
HETATM   24  H3  UNL     1      -1.669  -0.898   1.983  1.00  0.00           H  
HETATM   25  H4  UNL     1       1.508  -1.411   1.374  1.00  0.00           H  
HETATM   26  H5  UNL     1       2.751  -0.828  -0.625  1.00  0.00           H  
HETATM   27  H6  UNL     1       1.595   0.451  -1.074  1.00  0.00           H  
HETATM   28  H7  UNL     1       5.137  -0.176  -0.115  1.00  0.00           H  
HETATM   29  H8  UNL     1       3.833   3.134   1.356  1.00  0.00           H  
HETATM   30  H9  UNL     1       0.157  -1.402  -1.383  1.00  0.00           H  
HETATM   31  H10 UNL     1       1.431  -3.283   0.377  1.00  0.00           H  
HETATM   32  H11 UNL     1      -1.765  -2.515  -0.251  1.00  0.00           H  
HETATM   33  H12 UNL     1       0.005  -2.640   2.002  1.00  0.00           H  
HETATM   34  H13 UNL     1      -3.531   3.111   0.614  1.00  0.00           H  
CONECT    1    2    2
CONECT    2    3   21
CONECT    3    4   22
CONECT    4    5    5   23
CONECT    5    6   19
CONECT    6    7   17   24
CONECT    7    8
CONECT    8    9   15   25
CONECT    9   10   26   27
CONECT   10   11
CONECT   11   12   12   13   14
CONECT   13   28
CONECT   14   29
CONECT   15   16   17   30
CONECT   16   31
CONECT   17   18   32
CONECT   18   33
CONECT   19   20   20   21
CONECT   21   34
END

HMDB0001271
     RDKit          3D
Pseudouridine 5'-phosphate
 34 35  0  0  0  0  0  0  0  0999 V2000
   -4.4828    2.7658   -1.6486 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7232    1.9334   -1.0482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3975    0.7802   -1.6562 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5968   -0.1292   -1.0581 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0947    0.1098    0.1974 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2197   -0.7730    0.9689 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0032   -0.1245    1.1138 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9928   -0.8725    0.5504 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0262   -0.1033   -0.2117 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6506    0.8063    0.6589 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8066    1.6390   -0.2652 P   0  0  0  0  0  5  0  0  0  0  0  0
    3.3778    1.7292   -1.6941 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2715    0.8035   -0.1508 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9805    3.1780    0.3710 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3264   -1.8664   -0.4060 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1023   -2.9945   -0.5087 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9651   -2.1029    0.3541 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6532   -3.0083    1.3883 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4559    1.3142    0.7911 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0374    1.6138    1.9470 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2480    2.2030    0.1869 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7793    0.6041   -2.6070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3307   -1.0490   -1.5330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6690   -0.8985    1.9834 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5083   -1.4107    1.3743 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7510   -0.8279   -0.6246 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5949    0.4513   -1.0740 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1373   -0.1755   -0.1148 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8331    3.1338    1.3565 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1574   -1.4024   -1.3826 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4307   -3.2832    0.3775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7653   -2.5145   -0.2513 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0051   -2.6404    2.0020 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5305    3.1112    0.6136 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 11 14  1  0
  8 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
  5 19  1  0
 19 20  2  0
 19 21  1  0
 21  2  1  0
 17  6  1  0
  3 22  1  0
  4 23  1  0
  6 24  1  1
  8 25  1  1
  9 26  1  0
  9 27  1  0
 13 28  1  0
 14 29  1  0
 15 30  1  6
 16 31  1  0
 17 32  1  6
 18 33  1  0
 21 34  1  0
M  END

Synonyms

Value	Source
(1S)-1,4-Anhydro-1-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-5-O-phosphono-D-ribitol	ChEBI
5-(5-O-Phosphono-beta-D-ribofuranosyl)pyrimidine-2,4(1H,3H)-dione	ChEBI
5-(5-O-Phosphono-b-D-ribofuranosyl)pyrimidine-2,4(1H,3H)-dione	Generator
5-(5-O-Phosphono-β-D-ribofuranosyl)pyrimidine-2,4(1H,3H)-dione	Generator
Pseudouridine 5'-phosphoric acid	Generator
Pseudouridylic acid	MeSH, HMDB
5-(5-O-Phosphono-beta-D-ribofuranosyl)-2,4(1H,3H)-pyrimidinedione	HMDB
5-(5-O-Phosphono-β-D-ribofuranosyl)-2,4(1H,3H)-pyrimidinedione	HMDB
Pseudouridine 5'-phosphate	HMDB
Pseudouridine 5’-phosphate	HMDB
Pseudouridine monophosphate	HMDB

Molecular Formula

C₉H₁₃N₂O₉P

Average Mass

324.1813

Monoisotopic Mass

324.035866536

IUPAC Name

{[(2R,3S,4R,5S)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}phosphonic acid

Traditional Name

pseudouridine 5'-phosphate

CAS Registry Number

1157-60-4

SMILES

O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COP(O)(O)=O)C1=CNC(=O)NC1=O

InChI Identifier

InChI=1S/C9H13N2O9P/c12-5-4(2-19-21(16,17)18)20-7(6(5)13)3-1-10-9(15)11-8(3)14/h1,4-7,12-13H,2H2,(H2,16,17,18)(H2,10,11,14,15)/t4-,5-,6-,7+/m1/s1

InChI Key

MOBMOJGXNHLLIR-GBNDHIKLSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Pentose phosphates

Alternative Parents

Substituents

Pentose phosphate
Pentose-5-phosphate
C-glycosyl compound
Glycosyl compound
Monosaccharide phosphate
Pyrimidone
Monoalkyl phosphate
Hydropyrimidine
Organic phosphoric acid derivative
Phosphoric acid ester
Pyrimidine
Alkyl phosphate
Tetrahydrofuran
Vinylogous amide
Heteroaromatic compound
Secondary alcohol
Urea
1,2-diol
Lactam
Dialkyl ether
Azacycle
Ether
Organoheterocyclic compound
Oxacycle
Organonitrogen compound
Alcohol
Organic oxide
Organopnictogen compound
Hydrocarbon derivative
Organic nitrogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

C-nucleoside phosphate (CHEBI:18116 )

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Property	Value	Source
Water Solubility	7.51 g/L	ALOGPS
logP	-1.9	ALOGPS
logP	-3.2	ChemAxon
logS	-1.6	ALOGPS
pKa (Strongest Acidic)	1.23	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	174.65 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	63.31 m³·mol⁻¹	ChemAxon
Polarizability	26.32 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	splash10-0092-7921000000-3b484f48c79da75d22b9	2016-09-22	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (2 TMS) - 70eV, Positive	splash10-0zor-5984100000-c1d4654dc77f1a2defc3	2017-10-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-004i-0669000000-0b19df9acf8df54d0c28	2015-09-14	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-004j-4493000000-38400e5991956cb67184	2015-09-14	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-000l-3900000000-ebfc1c181ae3a767f1d5	2015-09-14	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-0096-9022000000-61eca04124385371e070	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-004l-9000000000-d8f1a9a373cb543c5a50	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-004i-9000000000-7662d761a5f16134b340	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-00fr-9007000000-706b8bb8bcb6e1f088ab	2021-09-23	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-004i-9000000000-a5e502a2627af2048a1f	2021-09-23	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-004i-9000000000-a5e502a2627af2048a1f	2021-09-23	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-004i-0191000000-d8971429f6e3bcedb1b2	2021-09-24	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-056r-0960000000-db21c37dfcf9636eeeb4	2021-09-24	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-03di-2900000000-8e2c2edc3141326a4fb1	2021-09-24	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)		2021-09-16	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (retained)	2025-10-23	545.2
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	412.2
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (void)	2025-10-23	48.4
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	257.2
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	314.7
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-23	261.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	395.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	878.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	755.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	149.4
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	418.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	161.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	36.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	471.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	841.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (void)	2025-10-23	52.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	267.8
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	653.3
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	566.1

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_1	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@@H]1COP(=O)(O)O	standard non polar	2025-10-23	2367.27
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_2	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O)[C@H]1O	standard non polar	2025-10-23	2263.85
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_3	C[Si](C)(C)OP(=O)(O)OC[C@H]1O[C@@H](C2=C[NH]C(=O)[NH]C2=O)[C@H](O)[C@@H]1O	standard non polar	2025-10-23	2157.94
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_4	C[Si](C)(C)N1C=C([C@@H]2O[C@H](COP(=O)(O)O)[C@@H](O)[C@H]2O)C(=O)[NH]C1=O	standard non polar	2025-10-23	1399.62
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_5	C[Si](C)(C)N1C(=O)[NH]C=C([C@@H]2O[C@H](COP(=O)(O)O)[C@@H](O)[C@H]2O)C1=O	standard non polar	2025-10-23	2009.98
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_6	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-23	1959.72
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_7	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@@H]1COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	1766.37
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_8	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@@H]1COP(=O)(O)O	standard non polar	2025-10-23	2042.71
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_9	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@@H]1COP(=O)(O)O	standard non polar	2025-10-23	1871.44
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_10	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O	standard non polar	2025-10-23	1351.36
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_11	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O)[C@H]1O	standard non polar	2025-10-23	2332.52
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_12	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O)[C@H]1O	standard non polar	2025-10-23	1646.07
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_13	C[Si](C)(C)OP(=O)(OC[C@H]1O[C@@H](C2=C[NH]C(=O)[NH]C2=O)[C@H](O)[C@@H]1O)O[Si](C)(C)C	standard non polar	2025-10-23	2078.07
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_14	C[Si](C)(C)OP(=O)(O)OC[C@H]1O[C@@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)[C@H](O)[C@@H]1O	standard non polar	2025-10-23	2030.52
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_15	C[Si](C)(C)OP(=O)(O)OC[C@H]1O[C@@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)[C@H](O)[C@@H]1O	standard non polar	2025-10-23	1588.58
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_16	C[Si](C)(C)N1C=C([C@@H]2O[C@H](COP(=O)(O)O)[C@@H](O)[C@H]2O)C(=O)N([Si](C)(C)C)C1=O	standard non polar	2025-10-23	1769.46
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_17	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-23	1996.01
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_18	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-23	2330.52
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_19	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-23	1710.08
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_20	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@@H]1COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1909.55
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_21	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@@H]1COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	846.959
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_22	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@@H]1COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	2301.4
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_23	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@@H]1COP(=O)(O)O	standard non polar	2025-10-23	2487.65
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_24	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O	standard non polar	2025-10-23	1984.16
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_25	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O	standard non polar	2025-10-23	1911.94
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_26	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O	standard non polar	2025-10-23	1577.21
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_27	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O)[C@H]1O	standard non polar	2025-10-23	1842.84
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_28	C[Si](C)(C)OP(=O)(OC[C@H]1O[C@@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)[C@H](O)[C@@H]1O)O[Si](C)(C)C	standard non polar	2025-10-23	2051.46
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_29	C[Si](C)(C)OP(=O)(OC[C@H]1O[C@@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)[C@H](O)[C@@H]1O)O[Si](C)(C)C	standard non polar	2025-10-23	1769.14
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_30	C[Si](C)(C)OP(=O)(O)OC[C@H]1O[C@@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)[C@H](O)[C@@H]1O	standard non polar	2025-10-23	2328.06
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_31	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-23	3177.39
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_32	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-23	2420.81
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_33	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-23	1781.97
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_34	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-23	1957.93
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_35	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@@H]1COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2000.48
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_36	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@@H]1COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1281.36
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_37	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@@H]1COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	2354.54
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_38	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O	standard non polar	2025-10-23	2114.77
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_39	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O	standard non polar	2025-10-23	2475.2
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_40	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O	standard non polar	2025-10-23	1032.72
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_41	C[Si](C)(C)OP(=O)(OC[C@H]1O[C@@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)[C@H](O)[C@@H]1O)O[Si](C)(C)C	standard non polar	2025-10-23	1984.17
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_42	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-23	1576.84
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_43	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-23	2469.63
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_44	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-23	1483.29
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_45	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@@H]1COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1344.05
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_46	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O	standard non polar	2025-10-23	1981.17
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_47	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-23	2613.89
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_1	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@@H]1COP(=O)(O)O	standard polar	2025-10-23	2523.58
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_2	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O)[C@H]1O	standard polar	2025-10-23	1979.6
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_3	C[Si](C)(C)OP(=O)(O)OC[C@H]1O[C@@H](C2=C[NH]C(=O)[NH]C2=O)[C@H](O)[C@@H]1O	standard polar	2025-10-23	2404.05
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_4	C[Si](C)(C)N1C=C([C@@H]2O[C@H](COP(=O)(O)O)[C@@H](O)[C@H]2O)C(=O)[NH]C1=O	standard polar	2025-10-23	2314.14
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_5	C[Si](C)(C)N1C(=O)[NH]C=C([C@@H]2O[C@H](COP(=O)(O)O)[C@@H](O)[C@H]2O)C1=O	standard polar	2025-10-23	1976.51
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_6	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O)[C@H]1O[Si](C)(C)C	standard polar	2025-10-23	2183.98
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_7	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@@H]1COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	2663.42
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_8	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@@H]1COP(=O)(O)O	standard polar	2025-10-23	1445.63
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_9	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@@H]1COP(=O)(O)O	standard polar	2025-10-23	819.055
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_10	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O	standard polar	2025-10-23	2217.54
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_11	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O)[C@H]1O	standard polar	2025-10-23	2172.73
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_12	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O)[C@H]1O	standard polar	2025-10-23	2109.17
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_13	C[Si](C)(C)OP(=O)(OC[C@H]1O[C@@H](C2=C[NH]C(=O)[NH]C2=O)[C@H](O)[C@@H]1O)O[Si](C)(C)C	standard polar	2025-10-23	1849.3
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_14	C[Si](C)(C)OP(=O)(O)OC[C@H]1O[C@@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)[C@H](O)[C@@H]1O	standard polar	2025-10-23	1885.0
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_15	C[Si](C)(C)OP(=O)(O)OC[C@H]1O[C@@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)[C@H](O)[C@@H]1O	standard polar	2025-10-23	1198.77
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_16	C[Si](C)(C)N1C=C([C@@H]2O[C@H](COP(=O)(O)O)[C@@H](O)[C@H]2O)C(=O)N([Si](C)(C)C)C1=O	standard polar	2025-10-23	1792.85
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_17	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard polar	2025-10-23	2059.04
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_18	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O)[C@H]1O[Si](C)(C)C	standard polar	2025-10-23	2766.68
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_19	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O)[C@H]1O[Si](C)(C)C	standard polar	2025-10-23	2032.77
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_20	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@@H]1COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2746.92
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_21	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@@H]1COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	1543.46
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_22	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@@H]1COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	2164.76
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_23	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@@H]1COP(=O)(O)O	standard polar	2025-10-23	2195.13
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_24	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O	standard polar	2025-10-23	1582.86
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_25	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O	standard polar	2025-10-23	2646.5
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_26	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O	standard polar	2025-10-23	1967.99
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_27	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O)[C@H]1O	standard polar	2025-10-23	2716.97
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_28	C[Si](C)(C)OP(=O)(OC[C@H]1O[C@@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)[C@H](O)[C@@H]1O)O[Si](C)(C)C	standard polar	2025-10-23	2234.75
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_29	C[Si](C)(C)OP(=O)(OC[C@H]1O[C@@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)[C@H](O)[C@@H]1O)O[Si](C)(C)C	standard polar	2025-10-23	2714.57
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_30	C[Si](C)(C)OP(=O)(O)OC[C@H]1O[C@@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)[C@H](O)[C@@H]1O	standard polar	2025-10-23	1750.0
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_31	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)[NH]C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard polar	2025-10-23	3115.14
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_32	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard polar	2025-10-23	1857.85
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_33	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard polar	2025-10-23	2562.0
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_34	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O)[C@H]1O[Si](C)(C)C	standard polar	2025-10-23	2030.07
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_35	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@@H]1COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2762.44
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_36	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@@H]1COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1444.81
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_37	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@@H]1COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	3171.09
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_38	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O	standard polar	2025-10-23	1838.8
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_39	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O	standard polar	2025-10-23	2088.56
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_40	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O	standard polar	2025-10-23	2149.45
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_41	C[Si](C)(C)OP(=O)(OC[C@H]1O[C@@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)[C@H](O)[C@@H]1O)O[Si](C)(C)C	standard polar	2025-10-23	2674.15
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_42	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)[NH]C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard polar	2025-10-23	2384.19
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_43	C[Si](C)(C)O[C@H]1[C@H](C2=C[NH]C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard polar	2025-10-23	1892.47
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_44	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard polar	2025-10-23	2481.36
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_45	C[Si](C)(C)O[C@H]1[C@@H](O)[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@@H]1COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	3617.98
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_46	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O	standard polar	2025-10-23	1482.65
Gas Chromatography	Pseudouridine 5'-phosphate_TMS_47	C[Si](C)(C)O[C@H]1[C@H](C2=CN([Si](C)(C)C)C(=O)N([Si](C)(C)C)C2=O)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard polar	2025-10-23	2492.38

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Feces

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Name	SMPDB/PathBank	Species
Purine Degradation		Escherichia coli Pseudomonas aeruginosa Escherichia coli SMS-3-5 Escherichia coli UTI89 Escherichia coli 55989 Escherichia coli SE11 Pseudomonas aeruginosa PA7 Actinobacillus succinogenes 130Z Escherichia coli CFT073 Myxococcus xanthus DK 1622 Bacillus subtilis Pseudomonas stutzeri Klebsiella pneumoniae Bacillus cereus Pseudomonas fluorescens Pf-5 Bacillus amyloliquefaciens Streptococcus pneumoniae Roseburia intestinalis L1-82 Clostridium saccharoperbutylacetonicum N1-4(HMT) Salmonella enterica Staphylococcus aureus Clostridium perfringens Clostridium sporogenes Lactobacillus fermentum IFO 3956 Streptococcus pneumoniae TIGR4 Aromatoleum aromaticum EbN1 Saccharopolyspora erythraea NRRL 2338 Streptomyces avermitilis MA-4680 Shewanella denitrificans OS217 Acidaminococcus fermentans DSM 20731 Anaerococcus prevotii DSM 20548 Anaerostipes caccae Anaerostipes hadrus Bacillus cereus AH187 (F4810/72) Bacillus halodurans C-125 Alkalihalobacillus pseudofirmus OF4 Bacillus timonensis 10403023 Bacteroides caccae Bacteroides cellulosilyticus Bacteroides eggerthii Bacteroides fragilis Bacteroides fragilis 638R Bacteroides fragilis YCH46 Bacteroides ovatus Bacteroides stercoris Bacteroides stercoris ATCC 43183 Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 Bacteroides vulgatus Bacteroides xylanisolvens XB1A Bifidobacterium adolescentis Bifidobacterium adolescentis ATCC 15703 Bifidobacterium animalis subsp. lactis Bifidobacterium longum subsp. longum JDM301 Bifidobacterium thermophilum RBL67 Blautia obeum A2-162 Blautia obeum ATCC 29174 Brevibacillus brevis NBRC 100599 Clostridium beijerinckii NCIMB 8052 Clostridium botulinum Clostridium perfringens ATCC 13124 Clostridium saccharolyticum Clostridium sticklandii Dorea formicigenerans ATCC 27755 Dysgonomonas gadei ATCC BAA-286 Eggerthella lenta DSM 2243 Enterococcus faecalis Enterococcus hirae ATCC 9790 Eubacterium rectale ATCC 33656 Eubacterium siraeum 70/3 Geobacter metallireducens Haemophilus parainfluenzae T3T1 Limosilactobacillus fermentum Lactobacillus paracasei Lactobacillus reuteri Odoribacter splanchnicus DSM 20712 Parabacteroides distasonis Parabacteroides distasonis ATCC 8503 Parabacteroides goldsteinii dnLKV18 Porphyromonas asaccharolytica DSM 20707 Porphyromonas endodontalis ATCC 35406 Porphyromonas gingivalis ATCC 33277 Prevotella ruminicola 23 Roseburia hominis A2-183 Ruminococcus torques L2-14 Streptococcus salivarius lactobacillus crispatus lactobacillus jensenii lactobacillus vaginalis Pelobacter carbinolicus Spirochaeta thermophila Thermus thermophilus Burkholderia cepacia Pseudomonas fluorescens Pseudomonas mendocina Pseudomonas putida Pseudomonas syringae Xanthomonas campestris Bradyrhizobium japonicum Mesorhizobium loti Neisseria mucosa Chromobacterium violaceum Citrobacter koseri Shigella boydii Shigella dysenteriae Shigella flexneri Shigella sonnei Aeromonas hydrophila Vibrio cholerae Vibrio vulnificus Bacteroides uniformis Fusobacterium ulcerans Acidithiobacillus ferrooxidans Cytophaga hutchinsonii Capnocytophaga sputigena Chlorobium phaeobacteroides Ruminococcus albus Staphylococcus epidermidis Deinococcus radiodurans Streptococcus gordonii Streptococcus oralis Streptococcus sanguinis Streptococcus mutans Streptococcus agalactiae Streptococcus pyogenes Streptococcus dysgalactiae Streptococcus equinus Streptococcus equi Streptococcus uberis Enterococcus gallinarum Bacillus licheniformis Priestia megaterium Bacillus mycoides Bacillus pumilus Bacillus thuringiensis Clostridium butyricum Moorella thermoacetica Weissella confusa Lactobacillus delbrueckii Lactobacillus helveticus Lactobacillus plantarum Lactobacillus gasseri Lactobacillus sakei Lactobacillus amylovorus Listeria monocytogenes Bifidobacterium angulatum Cellulomonas flavigena Corynebacterium diphtheriae Corynebacterium glutamicum Methanococcus vannielii Desulfobacterium autotrophicum Thermotoga neapolitana Roseobacter denitrificans Bifidobacterium pseudocatenulatum Staphylococcus lugdunensis Acidothermus cellulolyticus Neisseria subflava Staphylococcus saprophyticus Pelobacter propionicus Enterococcus avium Lactobacillus johnsonii Enterococcus casseliflavus Eubacterium eligens Eubacterium ventriosum Stenotrophomonas maltophilia Leptotrichia buccalis Actinosynnema mirum Enterococcus cecorum Streptococcus cristatus Enterococcus durans Blautia hydrogenotrophica Holdemania filiformis Sodalis glossinidius Streptococcus peroris Enterobacter cancerogenus Alloprevotella tannerae Streptococcus constellatus Bifidobacterium gallicum Bacillus clausii Bacillus pseudofirmus Lactobacillus amylolyticus Clostridium methylpentosum Bacillus selenitireducens Achromobacter xylosoxidans Burkholderia cenocepacia Methylibium petroleiphilum Pelotomaculum thermopropionicum Syntrophobacter fumaroxidans Citrobacter youngae Ureaplasma parvum Leuconostoc kimchii Lactobacillus iners Streptococcus lutetiensis Ilyobacter polytropus Marvinbryantia formatexigens Anaerotruncus colihominis Alicycliphilus denitrificans Desulfovibrio magneticus Shewanella denitrificans Bacteroides massiliensis Escherichia albertii Subdoligranulum variabile Geobacter bemidjiensis Lactobacillus gastricus Lactobacillus ultunensis Streptococcus pseudopneumoniae Bacteroides nordii Bacteroides plebeius Bacteroides pyogenes Geobacter lovleyi Streptococcus gallolyticus Bacteroides intestinalis Bacteroides salanitronis Bacteroides fluxus Bacteroides oleiciplenus Bacteroides faecis Agrobacterium tumefaciens Bacteroides helcogenes Bacteroides xylanisolvens Bifidobacterium animalis Bifidobacterium catenulatum Blautia obeum Clostridium beijerinckii Dorea formicigenerans Dysgonomonas gadei Enterococcus faecium Enterococcus hirae Gemella sanguinis Haemophilus parainfluenzae Klebsiella variicola Lactobacillus rhamnosus Lactobacillus ruminis Lactococcus lactis Leuconostoc citreum Parabacteroides goldsteinii Porphyromonas asaccharolytica Prevotella ruminicola Streptococcus mitis Streptococcus parasanguinis Streptococcus suis Streptococcus thermophiles Gemella haemolysans Rothia dentocariosa Granulicatella adiacens Barnesiella intestinihominis Achromobacter xylosoxidans A8 Acinetobacter baumannii ACICU Actinobacillus pleuropneumoniae serovar 5b str. L20 Actinobacillus pleuropneumoniae serovar 3 str. JL03 Actinobacillus pleuropneumoniae serovar 7 str. AP76 Aeromonas hydrophila subsp. hydrophila ATCC 7966 Agrobacterium tumefaciens str. C58 Bacillus cereus ATCC 10987 Bacillus megaterium QM B1551 Bacillus thuringiensis serovar konkukian str. 97-27 Bacillus licheniformis ATCC 14580 Bacillus clausii KSM-K16 Bacillus amyloliquefaciens FZB42 Bacillus pumilus SAFR-032 Bacillus cereus B4264 Bacillus cereus AH820 Bacillus cereus G9842 Bacillus cereus Q1 Priestia megaterium DSM 319 Bacillus subtilis subsp. spizizenii str. W23 Bacillus amyloliquefaciens DSM 7 Bifidobacterium animalis subsp. lactis AD011 Bradyrhizobium japonicum USDA 110 Citrobacter koseri ATCC BAA-895 Clostridium perfringens str. 13 Clostridium botulinum A str. Hall Clostridium botulinum B1 str. Okra Clostridium botulinum A2 str. Kyoto Clostridium botulinum Ba4 str. 657 Clostridium sticklandii DSM 519 Clostridium sp. SY8519 Clostridium perfringens SM101 Cronobacter sakazakii ATCC BAA-894 Delftia acidovorans SPH-1 Dyadobacter fermentans DSM 18053 Enterobacter cloacae subsp. cloacae ATCC 13047 Escherichia coli APEC O1 Escherichia coli E24377A Escherichia coli O127:H6 str. E2348/69 Escherichia coli UMN026 Escherichia fergusonii ATCC 35469 Escherichia coli ED1a Escherichia coli IAI39 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Lactobacillus plantarum WCFS1 Lactobacillus johnsonii NCC 533 Lactobacillus salivarius UCC118 Lactobacillus acidophilus NCFM Lactobacillus sakei subsp. sakei 23K Lactobacillus brevis ATCC 367 Lactobacillus casei ATCC 334 Lactobacillus helveticus DPC 4571 Lactobacillus amylovorus GRL 1112 Lactobacillus reuteri SD2112 Lactococcus lactis subsp. lactis Il1403 Lactococcus lactis subsp. cremoris SK11 Lactococcus lactis subsp. cremoris MG1363 Leptotrichia buccalis C-1013-b Lysinibacillus sphaericus C3-41 Mesorhizobium loti MAFF303099 Methylobacterium radiotolerans JCM 2831 Methylobacterium populi BJ001 Micrococcus luteus NCTC 2665 Neisseria meningitidis Z2491 Neisseria meningitidis FAM18 Escherichia coli 042 Edwardsiella tarda FL6-60 Bifidobacterium animalis subsp. lactis CNCM I-2494 Pediococcus pentosaceus ATCC 25745 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 Proteus mirabilis HI4320 Pseudomonas putida KT2440 Pseudomonas fluorescens Pf0-1 Pseudomonas stutzeri A1501 Pseudomonas fluorescens SBW25 Pseudomonas putida GB-1 Rhizobium leguminosarum bv. viciae 3841 Rhizobium leguminosarum bv. trifolii WSM2304 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Dublin str. CT02021853 Shigella sonnei Ss046 Shigella dysenteriae Sd197 Shigella flexneri 5 str. 8401 Spirosoma linguale DSM 74 Staphylococcus aureus subsp. aureus Mu50 Staphylococcus aureus subsp. aureus COL Staphylococcus aureus subsp. aureus MRSA252 Staphylococcus epidermidis RP62A Staphylococcus epidermidis ATCC 12228 Staphylococcus haemolyticus JCSC1435 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Staphylococcus aureus subsp. aureus NCTC 8325 Stenotrophomonas maltophilia K279a Stenotrophomonas maltophilia R551-3 Streptococcus agalactiae 2603V/R Streptococcus mutans UA159 Streptococcus agalactiae NEM316 Streptococcus thermophilus LMG 18311 Streptococcus pyogenes MGAS9429 Streptococcus pneumoniae D39 Streptococcus sanguinis SK36 Streptococcus gordonii str. Challis substr. CH1 Streptococcus pneumoniae Hungary19A-6 Streptococcus pyogenes NZ131 Streptococcus uberis 0140J Streptococcus pneumoniae JJA Streptococcus equi subsp. equi 4047 Streptococcus oralis Uo5 Vibrio parahaemolyticus RIMD 2210633 Yersinia enterocolitica subsp. enterocolitica 8081 Yersinia pseudotuberculosis IP 31758 Bacteroides cellulosilyticus DSM 14838 Bacteroides eggerthii 1_2_48FAA Bacteroides fluxus YIT 12057 Bacteroides graminisolvens Bacteroides graminisolvens DSM 19988 = JCM 15093 Bacteroides intestinalis DSM 17393 Bacteroides nordii CL02T12C05 Bacteroides oleiciplenus YIT 12058 Bacteroides ovatus ATCC 8483 Bacteroides pyogenes DSM 20611 = JCM 6294 Bacteroides uniformis ATCC 8492 Bacteroides xylanisolvens SD CC 1b Bacteroides sp. 1_1_14 Bacteroides sp. 1_1_30 Bacteroides sp. 2_1_22 Bacteroides sp. 2_2_4 Bacteroides sp. D2 Bacteroides sp. D20 Bacteroides sp. D22 Barnesiella intestinihominis YIT 11860 Porphyromonas endodontalis Porphyromonas uenonis 60-3 Alloprevotella tannerae ATCC 51259 Prevotella buccae ATCC 33574 Prevotella denticola Prevotella loescheii DSM 19665 = JCM 12249 = ATCC 15930 Prevotella pallens ATCC 700821 Prevotella shahii DSM 15611 = JCM 12083 Prevotella timonensis CRIS 5C-B1 Parabacteroides johnsonii DSM 18315 Parabacteroides sp. D13 Tannerella forsythia Bacteroides coprophilus DSM 18228 = JCM 13818 Bacteroides dorei DSM 17855 Spirosoma linguale Chlorobium limicola Cetobacterium somerae ATCC BAA-474 Thermodesulfovibrio yellowstonii Bradyrhizobium elkanii Rhizobium etli Lautropia mirabilis Lautropia mirabilis ATCC 51599 Sutterella parvirubra Sutterella parvirubra YIT 11816 Neisseria cinerea ATCC 14685 Neisseria elongata Neisseria elongata subsp. glycolytica ATCC 29315 Neisseria macacae Neisseria macacae ATCC 33926 Neisseria mucosa ATCC 25996 Neisseria subflava NJ9703 Nitrosospira multiformis Aeromonas caviae Aeromonas media Aeromonas veronii Succinatimonas hippei Succinatimonas hippei YIT 12066 Succinivibrio dextrinosolvens Allochromatium vinosum Cedecea davisae Cedecea davisae DSM 4568 Citrobacter amalonaticus Citrobacter amalonaticus Y19 Citrobacter freundii Citrobacter youngae ATCC 29220 Enterobacter hormaechei Escherichia albertii TW07627 Klebsiella aerogenes Salmonella Salmonella enterica subsp. enterica serovar Typhimurium Trabulsiella guamensis Trabulsiella guamensis ATCC 49490 Tatumella ptyseos Tatumella ptyseos ATCC 33301 Edwardsiella tarda Edwardsiella tarda ATCC 23685 Hafnia alvei Hafnia alvei ATCC 51873 Morganella morganii Morganella morganii subsp. morganii KT Providencia rustigianii DSM 4541 Serratia marcescens subsp. marcescens Db11 Yersinia enterocolitica Yersinia pestis Yersinia pseudotuberculosis Plesiomonas shigelloides 302-73 Actinobacillus pleuropneumoniae Aggregatibacter aphrophilus Haemophilus sputorum Acinetobacter johnsonii Acinetobacter johnsonii SH046 Grimontia hollisae CIP 101886 Vibrio fluvialis Vibrio fluvialis PG41 Vibrio parahaemolyticus Vibrio mimicus Borrelia recurrentis Treponema denticola Acetomicrobium hydrogeniformans Bifidobacterium stercoris JCM 15918 Bifidobacterium angulatum DSM 20098 = JCM 7096 Bifidobacterium boum Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 Bifidobacterium gallicum DSM 20093 = LMG 11596 Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 Bifidobacterium thermacidophilum Bifidobacterium thermophilum Scardovia inopinata F0304 Corynebacterium durum Corynebacterium durum F0235 Corynebacterium tuberculostearicum Corynebacterium tuberculostearicum SK141 Gordonia terrae C-6 Brevibacterium casei Brevibacterium casei S18 Cellulosimicrobium cellulans Propionibacterium Streptomyces avermitilis Thermomonospora curvata Bacillus altitudinis Bacillus infantis NRRL B-14911 Lysinibacillus sphaericus Listeria monocytogenes 10403S Aneurinibacillus aneurinilyticus Aneurinibacillus aneurinilyticus ATCC 12856 Paenibacillus lactis 154 Gemella haemolysans ATCC 10379 Exiguobacterium aurantiacum Abiotrophia defectiva Abiotrophia defectiva ATCC 49176 Granulicatella adiacens ATCC 49175 Granulicatella elegans Granulicatella elegans ATCC 700633 Enterococcus asini ATCC 700915 Enterococcus caccae ATCC BAA-1240 Enterococcus casseliflavus ATCC 12755 Enterococcus cecorum DSM 20682 = ATCC 43198 Enterococcus dispar ATCC 51266 Enterococcus phoeniculicola ATCC BAA-412 Lactobacillus paracasei subsp. paracasei 8700:2 Lactobacillus rhamnosus LMS2-1 Lactobacillus amylolyticus DSM 11664 Lactobacillus iners DSM 13335 Lactobacillus ultunensis DSM 16047 Lactobacillus hilgardii DSM 20176 = ATCC 8290 Lactobacillus ruminis ATCC 25644 Lactobacillus salivarius DSM 20555 = ATCC 11741 Lactobacillus gastricus PS3 Lactobacillus mucosae LM1 Lactobacillus vaginalis DSM 5837 = ATCC 49540 Lactobacillus reuteri CF48-3A Pediococcus acidilactici DSM 20284 Pediococcus pentosaceus Leuconostoc lactis Weissella cibaria Weissella paramesenteroides Weissella paramesenteroides ATCC 33313 Lactococcus garvieae Streptococcus constellatus subsp. pharyngis SK1060 = CCUG 46377 Streptococcus australis ATCC 700641 Streptococcus equi subsp. zooepidemicus H70 Streptococcus equi subsp. zooepidemicus MGCS10565 Streptococcus equinus ATCC 9812 Streptococcus infantis ATCC 700779 Streptococcus lutetiensis 033 Streptococcus vestibularis F0396 Butyricicoccus pullicaecorum Butyricicoccus pullicaecorum 1.2 Clostridium butyricum E4 str. BoNT E BL5262 Clostridium celatum DSM 1785 Clostridium sartagoforme AAU1 Anaerofustis stercorihominis Anaerofustis stercorihominis DSM 17244 Eubacterium ventriosum ATCC 27560 Pseudoramibacter alactolyticus ATCC 23263 Anaerostipes caccae DSM 14662 Blautia hydrogenotrophica DSM 10507 Blautia wexlerae Clostridium asparagiforme DSM 15981 [Clostridium] bolteae ATCC BAA-613 Clostridium citroniae WAL-17108 [Clostridium] symbiosum WAL-14163 Lachnospira multipara [Ruminococcus] gnavus ATCC 29149 [Ruminococcus] lactaris ATCC 29176 [Ruminococcus] torques ATCC 27756 Roseburia inulinivorans DSM 16841 Anaerotruncus colihominis DSM 17241 Flavonifractor plautii ATCC 29863 Pseudoflavonifractor capillosus ATCC 29799 Subdoligranulum variabile DSM 15176 [Eubacterium] siraeum DSM 15702 [Bacteroides] pectinophilus ATCC 43243 Mogibacterium timidum Mogibacterium timidum ATCC 33093 Bulleidia extructa Bulleidia extructa W1219 Eggerthia catenaformis OT 569 = DSM 20559 [Clostridium] innocuum 2959 Holdemania filiformis DSM 12042 Solobacterium moorei F0204 Anaerococcus hydrogenalis DSM 7454 Anaerococcus vaginalis ATCC 51170 Peptoniphilus indolicus ATCC 29427 Streptomyces coelicolor A3(2) Borrelia burgdorferi ZS7 Bordetella pertussis Tohama I Bordetella parapertussis 12822 Xanthomonas campestris pv. campestris str. ATCC 33913 Xanthomonas campestris pv. campestris str. B100 Xanthomonas campestris pv. campestris str. 8004 Vibrio cholerae M66-2 Vibrio cholerae O1 biovar El Tor str. N16961 Corynebacterium glutamicum ATCC 13032 Clostridioides difficile 630 Clostridioides difficile NAP08 Shewanella frigidimarina NCIMB 400 Bacillus cytotoxicus NVH 391-98 Eggerthella sp. YY7918 Faecalitalea cylindroides T2-87 Lachnoclostridium phytofermentans ISDg Lactobacillus ruminis ATCC 27782 Leuconostoc citreum KM20 Streptococcus mitis B6 Streptococcus parasanguinis ATCC 15912 Streptococcus parasanguinis FW213 Streptococcus pasteurianus ATCC 43144 Streptococcus suis GZ1 Acholeplasma laidlawii PG-8A Acidothermus cellulolyticus 11B Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Alkaliphilus oremlandii OhILAs Amycolatopsis mediterranei U32 Anoxybacillus flavithermus WK1 Arthrobacter chlorophenolicus A6 Bacillus selenitireducens MLS10 Beutenbergia cavernae DSM 12333 Butyrivibrio proteoclasticus B316 Candidatus Desulforudis audaxviator MP104C Carboxydothermus hydrogenoformans Z-2901 Catenulispora acidiphila DSM 44928 Cellulomonas flavigena DSM 20109 Clavibacter michiganensis subsp. michiganensis NCPPB 382 Clostridium tetani E88 Clostridium thermocellum ATCC 27405 Corynebacterium glutamicum R Dehalococcoides ethenogenes 195 Dehalococcoides sp. CBDB1 Deinococcus radiodurans R1 Deinococcus geothermalis DSM 11300 Deinococcus proteolyticus MRP Exiguobacterium sibiricum 255-15 Exiguobacterium sp. AT1b Frankia sp. EuI1c Geobacillus kaustophilus HTA426 Geobacillus thermodenitrificans NG80-2 Intrasporangium calvum DSM 43043 Jonesia denitrificans DSM 20603 Kineococcus radiotolerans SRS30216 Kribbella flavida DSM 17836 Lactobacillus johnsonii FI9785 Lactobacillus crispatus ST1 Leuconostoc kimchii IMSNU 11154 Listeria innocua Clip11262 Listeria welshimeri serovar 6b str. SLCC5334 Macrococcus caseolyticus JCSC5402 Meiothermus ruber DSM 1279 Mycobacterium vanbaalenii PYR-1 Mycobacterium abscessus ATCC 19977 Mycobacterium sp. Spyr1 Nakamurella multipartita DSM 44233 Natranaerobius thermophilus JW/NM-WN-LF Nocardia farcinica IFM 10152 Nocardioides sp. JS614 Corynebacterium diphtheriae NCTC 13129 Oceanobacillus iheyensis HTE831 Dictyoglomus turgidum DSM 6724 Bacillus tusciae DSM 2912 Thermobaculum terrenum ATCC BAA-798 Pelotomaculum thermopropionicum SI Pseudonocardia dioxanivorans CB1190 Renibacterium salmoninarum ATCC 33209 Rhodococcus opacus B4 Rhodococcus jostii RHA1 Rhodococcus equi 103S Rubrobacter xylanophilus DSM 9941 Saccharomonospora viridis DSM 43017 Salinispora tropica CNB-440 Sanguibacter keddieii DSM 10542 Sphaerobacter thermophilus DSM 20745 Stackebrandtia nassauensis DSM 44728 Staphylococcus carnosus subsp. carnosus TM300 Streptococcus equi subsp. zooepidemicus Streptococcus suis BM407 Streptococcus gallolyticus UCN34 Streptomyces scabiei 87.22 Streptosporangium roseum DSM 43021 Symbiobacterium thermophilum IAM 14863 Thermobispora bispora DSM 43833 Thermomonospora curvata DSM 43183 Tsukamurella paurometabola DSM 20162 Ureaplasma parvum serovar 3 str. ATCC 700970 Ureaplasma parvum serovar 3 str. ATCC 27815 Aspergillus nomiae NRRL 13137 Aspergillus phoenicis Aspergillus ruber Aspergillus sclerotioniger Aspergillus glaucus Aspergillus leporis Aspergillus niger ATCC 1015 Aspergillus oryzae RIB40 Aspergillus terreus NIH2624 Aspergillus wentii Aspergillus clavatus NRRL 1 Aspergillus calidoustus Aspergillus tamarii Aspergillus tubingensis Aspergillus viridinutans Penicillium brevicompactum Penicillium canescens Penicillium citrinum Penicillium concentricum Penicillium daleae Penicillium hordei Penicillium italicum Penicillium nalgiovense Penicillium polonicum Penicillium solitum Penicillium thymicola Trichoderma atroviride IMI 206040 Trichoderma harzianum Trichoderma virens Trichoderma virens Gv29-8 Fusarium acutatum Fusarium fujikuroi IMI 58289 Fusarium mangiferae Fusarium nygamai Fusarium proliferatum ET1 Fusarium subglutinans Fusarium verticillioides 7600 Fusarium equiseti Fusarium oxysporum Fo5176 Fusarium oxysporum f. sp. lycopersici 4287 Fusarium austroamericanum Fusarium graminearum PH-1 Fusarium poae Fusarium pseudograminearum CS3096 Fusarium sporotrichioides Fusarium vanettenii Fusarium vanettenii 77-13-4 Fusarium tricinctum Mycolicibacterium fortuitum subsp. fortuitum DSM 46621 = ATCC 6841 Rhodococcus hoagii ATCC 33707 Anaerobutyricum hallii DSM 3353 Absiella dolichum DSM 3991 Holdemanella biformis DSM 3989 Bacteroides helcogenes P 36-108 Bacteroides salanitronis DSM 18170 Klebsiella aerogenes KCTC 2190 Treponema succinifaciens DSM 2489 Acaryochloris marina MBIC11017 Acidithiobacillus ferrooxidans ATCC 23270 Acidovorax citrulli AAC00-1 Acidovorax sp. JS42 Acidovorax ebreus TPSY Aeromonas salmonicida subsp. salmonicida A449 Agrobacterium vitis S4 Agrobacterium radiobacter K84 Alcanivorax borkumensis SK2 Alicycliphilus denitrificans K601 Vibrio fischeri MJ11 Aliivibrio salmonicida LFI1238 Alkalilimnicola ehrlichii MLHE-1 Anabaena variabilis ATCC 29413 Anaeromyxobacter dehalogenans 2CP-C Anaeromyxobacter sp. K Anaeromyxobacter dehalogenans 2CP-1 Aquifex aeolicus VF5 Arcobacter nitrofigilis DSM 7299 Azotobacter vinelandii DJ Mannheimia succiniciproducens MBEL55E Bordetella petrii DSM 12804 Borrelia afzelii PKo Borrelia turicatae 91E135 Borrelia hermsii DAH Borrelia duttonii Ly Borrelia recurrentis A1 Bradyrhizobium sp. ORS278 Bradyrhizobium sp. BTAi1 Burkholderia sp. 383 Burkholderia ambifaria MC40-6 Burkholderia phymatum STM815 Burkholderia phytofirmans PsJN Burkholderia cenocepacia J2315 Candidatus Blochmannia floridanus Candidatus Blochmannia pennsylvanicus str. BPEN Candidatus Pelagibacter ubique HTCC1062 Caulobacter crescentus CB15 Caulobacter crescentus NA1000 Caulobacter segnis ATCC 21756 Cellulophaga algicola DSM 14237 Clostridium lentocellum DSM 5427 Cellvibrio gilvus ATCC 13127 Chitinophaga pinensis DSM 2588 Chlorobium phaeobacteroides DSM 266 Chlorobium limicola DSM 245 Chloroherpeton thalassium ATCC 35110 Chromohalobacter salexigens DSM 3043 Citrobacter rodentium ICC168 Cronobacter turicensis z3032 Cyanothece sp. PCC 8801 Cyanothece sp. PCC 7424 Cytophaga hutchinsonii ATCC 33406 Dehalococcoides sp. VS Deinococcus deserti VCD115 Desulfitobacterium hafniense Y51 Desulfitobacterium hafniense DCB-2 Desulfobacterium autotrophicum HRM2 Desulfovibrio vulgaris str. Hildenborough Desulfovibrio vulgaris DP4 Desulfovibrio magneticus RS-1 Dickeya zeae Ech1591 Dickeya dadantii 3937 Dinoroseobacter shibae DFL 12 Edwardsiella ictaluri 93-146 Enterobacter sp. 638 Enterobacter cloacae SCF1 Erwinia tasmaniensis Et1/99 Erwinia amylovora CFBP1430 Erwinia billingiae Eb661 Ferrimonas balearica DSM 9799 Flavobacterium psychrophilum JIP02/86 Geobacter metallireducens GS-15 Geobacter uraniireducens Rf4 Geobacter lovleyi SZ Geobacter bemidjiensis Bem Geobacter sp. FRC-32 Geobacter sp. M18 Gloeobacter violaceus PCC 7421 Gluconobacter oxydans 621H Gramella forsetii KT0803 Haemophilus parasuis SH0165 Halorhodospira halophila SL1 Halothermothrix orenii H 168 Heliobacterium modesticaldum Ice1 Herminiimonas arsenicoxydans Herpetosiphon aurantiacus DSM 785 Idiomarina loihiensis L2TR Ilyobacter polytropus DSM 2926 Janthinobacterium sp. Marseille Klebsiella pneumoniae 342 Kosmotoga olearia TBF 19.5.1 Leadbetterella byssophila DSM 17132 Legionella longbeachae NSW150 Leptothrix cholodnii SP-6 Maricaulis maris MCS10 Marinobacter aquaeolei VT8 Marinomonas mediterranea MMB-1 Marinomonas posidonica IVIA-Po-181 Meiothermus silvanus DSM 9946 Methanococcus vannielii SB Methylibium petroleiphilum PM1 Methylobacterium extorquens AM1 Neisseria meningitidis alpha14 Neisseria lactamica 020-06 Neorickettsia sennetsu str. Miyayama Neorickettsia risticii str. Illinois Nitratiruptor sp. SB155-2 Nitrosococcus oceani ATCC 19707 Nitrosococcus halophilus Nc4 Nitrosospira multiformis ATCC 25196 Nostoc sp. PCC 7120 Nostoc punctiforme PCC 73102 Bordetella bronchiseptica RB50 Geobacter sulfurreducens PCA Haemophilus ducreyi 35000HP Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis Xanthomonas axonopodis pv. citri str. 306 Bdellovibrio bacteriovorus HD100 Thermus thermophilus HB27 Sodalis glossinidius str. 'morsitans' Synechococcus sp. JA-2-3B'a(2-13) Magnetococcus sp. MC-1 Opitutus terrae PB90-1 Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' Alteromonas macleodii str. 'Deep ecotype' Thermodesulfovibrio yellowstonii DSM 11347 Gemmatimonas aurantiaca T-27 Thermus scotoductus SA-01 Pantoea ananatis LMG 20103 Parvibaculum lavamentivorans DS-1 Pasteurella multocida subsp. multocida str. Pm70 Pectobacterium atrosepticum SCRI1043 Pectobacterium carotovorum subsp. carotovorum PC1 Pedobacter heparinus DSM 2366 Pelobacter carbinolicus DSM 2380 Pelobacter propionicus DSM 2379 Persephonella marina EX-H1 Petrotoga mobilis SJ95 Phenylobacterium zucineum HLK1 Photobacterium profundum SS9 Photorhabdus luminescens subsp. laumondii TTO1 Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 Pirellula staleyi DSM 6068 Planctomyces limnophilus DSM 3776 Polaromonas sp. JS666 Polaromonas naphthalenivorans CJ2 Prochlorococcus marinus str. MIT 9515 Prosthecochloris aestuarii DSM 271 Pseudoalteromonas haloplanktis TAC125 Pseudomonas syringae pv. tomato str. DC3000 Pseudomonas syringae pv. phaseolicola 1448A Pseudomonas syringae pv. syringae B728a Pseudomonas entomophila L48 Pseudomonas fulva 12-X Psychromonas ingrahamii 37 Rhizobium etli CFN 42 Rhizobium leguminosarum bv. trifolii WSM1325 Rhodothermus marinus DSM 4252 Roseiflexus sp. RS-1 Roseiflexus castenholzii DSM 13941 Roseobacter denitrificans OCh 114 Roseobacter litoralis Och 149 Ruegeria pomeroyi DSS-3 Ruegeria sp. TM1040 Salinibacter ruber DSM 13855 Salmonella enterica subsp. enterica serovar Paratyphi A str. Shewanella oneidensis MR-1 Shewanella sp. ANA-3 Shewanella amazonensis SB2B Shewanella sp. W3-18-1 Shewanella baltica OS155 Shewanella loihica PV-4 Shewanella sediminis HAW-EB3 Shewanella pealeana ATCC 700345 Shewanella baltica OS195 Shewanella halifaxensis HAW-EB4 Shewanella woodyi ATCC 51908 Shewanella piezotolerans WP3 Shewanella violacea DSS12 Shigella flexneri 2a str. 301 Shigella boydii Sb227 Shigella boydii CDC 3083-94 Sinorhizobium medicae WSM419 Sphingobium japonicum UT26S Spirochaeta thermophila DSM 6192 Streptobacillus moniliformis DSM 12112 Sulfurihydrogenibium azorense Az-Fu1 Sulfurimonas autotrophica DSM 16294 Sulfurovum sp. NBC37-1 Synechococcus sp. JA-3-3Ab Syntrophobacter fumaroxidans MPOB Thermomicrobium roseum DSM 5159 Thermosipho melanesiensis BI429 Thermosipho africanus TCF52B Thermotoga petrophila RKU-1 Thermotoga sp. RQ2 Thermotoga neapolitana DSM 4359 Thioalkalivibrio sp. K90mix Tolumonas auensis DSM 9187 Treponema brennaborense DSM 12168 Variovorax paradoxus EPS Verminephrobacter eiseniae EF01-2 Vibrio vulnificus CMCP6 Vibrio vulnificus YJ016 Vibrio splendidus LGP32 Weeksella virosa DSM 16922 Xanthomonas oryzae pv. oryzae KACC10331 Xanthomonas campestris pv. vesicatoria str. 85-10 Xanthomonas oryzae pv. oryzae PXO99A Xenorhabdus bovienii SS-2004 Xenorhabdus nematophila ATCC 19061 Zunongwangia profunda SM-A87 Sphingobacterium paucimobilis HER1398 Neisseria meningitidis serogroup C Atlantibacter hermannii NBRC 105704 Klebsiella michiganensis KCTC 1686 Chania multitudinisentens RB-25 Hungatella hathewayi DSM 13479

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0018836	Pseudouridine	Pseudouridine 5'-phosphate	Pseudouridine kinase	Phosphorylation	PathBank	31602464
MMDBr0018837	Pseudouridine 5'-phosphate	Uracil	Pseudouridine-5'-phosphate glycosidase	Transfer of a glycosyl group	PathBank	31602464

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Proteobacteria	19	Human ; Human feces; Human feces; pleural fluid plaque; bal; Pig	Unknown
Bacteria/Eubacteria	Tenericutes	2
Bacteria/Eubacteria	Firmicutes	10	Human feces; Human
Bacteria/Eubacteria	Spirochaetes	1	Pig
Bacteria/Eubacteria	Chloroflexi	3
Bacteria/Eubacteria	Actinobacteria	7	Human ; Human feces
Bacteria/Eubacteria	Deinococcus-thermus	2
Bacteria/Eubacteria	Thermotogae	9
Bacteria/Eubacteria	Gemmatimonadetes	1
Bacteria/Eubacteria	Acidobacteria	1
Eukaryota/Fungi	Ascomycota	3	Human feces; Human saliva	Unknown

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified									HMDB

External Links

HMDB ID

HMDB0001271

DrugBank ID

DB03829

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB022525

KNApSAcK ID

Not Available

Chemspider ID

388535

KEGG Compound ID

C01168

BioCyc ID

PSEUDOURIDINE-5-P

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

439424

PDB ID

Not Available

ChEBI ID

18116

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Charette M, Gray MW: Pseudouridine in RNA: what, where, how, and why. IUBMB Life. 2000 May;49(5):341-51. doi: 10.1080/152165400410182. [PubMed:10902565 ]
Brunk E, Sahoo S, Zielinski DC, Altunkaya A, Drager A, Mih N, Gatto F, Nilsson A, Preciat Gonzalez GA, Aurich MK, Prlic A, Sastry A, Danielsdottir AD, Heinken A, Noronha A, Rose PW, Burley SK, Fleming RMT, Nielsen J, Thiele I, Palsson BO: Recon3D enables a three-dimensional view of gene variation in human metabolism. Nat Biotechnol. 2018 Mar;36(3):272-281. doi: 10.1038/nbt.4072. Epub 2018 Feb 19. [PubMed:29457794 ]

Showing metabocard for Pseudouridine 5'-phosphate (MMDBc0029604)

MOL for #<Metabolite:0x00007f9aa5487988>

3D MOL for #<Metabolite:0x00007f9aa5487988>

3D SDF for #<Metabolite:0x00007f9aa5487988>

3D-SDF for #<Metabolite:0x00007f9aa5487988>

PDB for #<Metabolite:0x00007f9aa5487988>

3D PDB for #<Metabolite:0x00007f9aa5487988>

SMILES for #<Metabolite:0x00007f9aa5487988>

INCHI for #<Metabolite:0x00007f9aa5487988>

Structure for #<Metabolite:0x00007f9aa5487988>

3D Structure for #<Metabolite:0x00007f9aa5487988>