MiMeDB: Showing metabocard for D-Arabinose 5-phosphate (MMDBc0029914)

Plant

Animal

Pharmaceutical

Xenobiotic

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-11-17 23:46:39 UTC

Update Date

2024-10-15 18:44:50 UTC

Metabolite ID

MMDBc0029914

Metabolite Identification

Common Name

D-Arabinose 5-phosphate

Description

D-Arabinose 5-phosphate is an intermediate in biosynthesis of lipopolysaccharide.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309042000342D          

 14 13  0  0  1  0            999 V2000
   12.4149  -18.4154    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   11.7005  -18.8279    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.8274  -19.1299    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.0024  -17.7009    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.8439  -18.4154    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5583  -18.0029    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   15.2728  -18.4154    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   15.9873  -18.0029    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.7018  -18.4154    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1294  -18.0029    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.7018  -19.2404    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.9873  -17.1779    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.2728  -19.2404    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.5583  -17.1779    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  3  1  1  0  0  0  0
  4  1  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  5  1  0  0  0  0
 11  9  2  0  0  0  0
  8 12  1  6  0  0  0
  7 13  1  6  0  0  0
  6 14  1  1  0  0  0
  1 10  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0029914

> <DATABASE_NAME>
MIME

> <SMILES>
O[C@H](COP(O)(O)=O)[C@@H](O)[C@H](O)C=O

> <INCHI_IDENTIFIER>
InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h1,3-5,7-9H,2H2,(H2,10,11,12)/t3-,4-,5+/m1/s1

> <INCHI_KEY>
PPQRONHOSHZGFQ-WDCZJNDASA-N

> <FORMULA>
C5H11O8P

> <MOLECULAR_WEIGHT>
230.1098

> <EXACT_MASS>
230.01915384

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
25

> <JCHEM_AVERAGE_POLARIZABILITY>
17.998594047608492

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3R,4S)-2,3,4-trihydroxy-5-oxopentyl]oxy}phosphonic acid

> <ALOGPS_LOGP>
-1.64

> <JCHEM_LOGP>
-3.0615916523333335

> <ALOGPS_LOGS>
-1.08

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
6.51682044808608

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.4910102081094525

> <JCHEM_PKA_STRONGEST_BASIC>
-3.544450846242131

> <JCHEM_POLAR_SURFACE_AREA>
144.52

> <JCHEM_REFRACTIVITY>
42.256

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.93e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
arabinose 5-phosphate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-20         0                                  
HETATM    1  P   UNK     0      23.174 -34.375   0.000  0.00  0.00           P+0
HETATM    2  O   UNK     0      21.841 -35.145   0.000  0.00  0.00           O+0
HETATM    3  O   UNK     0      23.944 -35.709   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0      22.404 -33.042   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      25.842 -34.375   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      27.175 -33.605   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      28.509 -34.375   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      29.843 -33.605   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      31.177 -34.375   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      24.508 -33.605   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      31.177 -35.915   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      29.843 -32.065   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      28.509 -35.915   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      27.175 -32.065   0.000  0.00  0.00           O+0
CONECT    1    2    3    4   10                                             
CONECT    2    1                                                            
CONECT    3    1                                                            
CONECT    4    1                                                            
CONECT    5    6   10                                                       
CONECT    6    5    7   14                                                  
CONECT    7    6    8   13                                                  
CONECT    8    7    9   12                                                  
CONECT    9    8   11                                                       
CONECT   10    5    1                                                       
CONECT   11    9                                                            
CONECT   12    8                                                            
CONECT   13    7                                                            
CONECT   14    6                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   26    0
END

Synonyms

Value	Source
5-O-Phosphono-D-arabinose	ChEBI
D-a-5-p	ChEBI
D-Arabinose 5-phosphoric acid	Generator
Arabinose-5-P	HMDB
Arabinose-5P	HMDB
Arabinose 5-phosphate, di-li salt	MeSH, HMDB
Arabinose 5-phosphate	MeSH, HMDB
Arabinose 5-phosphate, (beta-D)-isomer	MeSH, HMDB

Molecular Formula

C₅H₁₁O₈P

Average Mass

230.1098

Monoisotopic Mass

230.01915384

IUPAC Name

{[(2R,3R,4S)-2,3,4-trihydroxy-5-oxopentyl]oxy}phosphonic acid

Traditional Name

arabinose 5-phosphate

CAS Registry Number

13137-52-5

SMILES

O[C@H](COP(O)(O)=O)[C@@H](O)[C@H](O)C=O

InChI Identifier

InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h1,3-5,7-9H,2H2,(H2,10,11,12)/t3-,4-,5+/m1/s1

InChI Key

PPQRONHOSHZGFQ-WDCZJNDASA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Pentose phosphates

Alternative Parents

Substituents

Pentose phosphate
Monosaccharide phosphate
Monoalkyl phosphate
Beta-hydroxy aldehyde
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Alpha-hydroxyaldehyde
Secondary alcohol
Polyol
Hydrocarbon derivative
Aldehyde
Organic oxide
Carbonyl group
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

D-arabinose 5-phosphate (CHEBI:16241 )

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Property	Value	Source
Water Solubility	19.3 g/L	ALOGPS
logP	-1.6	ALOGPS
logP	-3.1	ChemAxon
logS	-1.1	ALOGPS
pKa (Strongest Acidic)	1.49	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	144.52 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	42.26 m³·mol⁻¹	ChemAxon
Polarizability	18 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-014j-0954000000-13c360ef6d50c290ff75	2017-09-12	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-014j-1954000000-66deca60c06849233c1e	2017-09-12	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-014j-0954000000-13c360ef6d50c290ff75	2018-05-18	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-014j-1954000000-66deca60c06849233c1e	2018-05-18	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	splash10-0002-9100000000-b771da2f9bcb85359615	2017-09-01	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (3 TMS) - 70eV, Positive	splash10-01c0-2934100000-c0832bdf2f33a1c2e0ae	2017-10-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QQ , negative	splash10-004i-1090000000-31e1af2994eda21a1bc4	2017-09-14	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QQ , negative	splash10-0002-9100000000-2045507193c154fa6155	2017-09-14	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QQ , negative	splash10-002b-9000000000-ea919a44fa730a6b30ac	2017-09-14	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QQ , negative	splash10-004i-9000000000-585f803ae9cdd8a87b5b	2017-09-14	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QQ , negative	splash10-004i-9000000000-39ddb0bbc9b7b081c7fd	2017-09-14	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QTOF , negative	splash10-002b-9000000000-f3fe9e7cc40f16c3578e	2017-09-14	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-01q9-3690000000-06b766b00394897d8276	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0btd-9710000000-6f93a4202efb7ba3d3fd	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-0a4i-9200000000-a324e9f10ad080e0ea34	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-002r-9520000000-e3a1ec95af6dcad460c7	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-004i-9100000000-82ac7295f5c79a94ec38	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-004i-9000000000-352da97e65dd9cc16df9	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-004j-9040000000-0b86189542286f55e20f	2021-09-25	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-004j-9000000000-98c2dab693f3635a82c4	2021-09-25	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-004i-9000000000-a5e502a2627af2048a1f	2021-09-25	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-001j-9540000000-adbdd8414bace2c44f56	2021-09-25	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0002-9200000000-b929bd8d4139b2fa147a	2021-09-25	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-0007-9000000000-cbffc4c85bf45fc4aeef	2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)		2021-09-25	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (retained)	2025-10-23	548.6
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	453.0
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (void)	2025-10-23	46.5
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	229.3
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	311.5
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (void)	2025-10-23	319.5
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (void)	2025-10-23	450.2
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	803.6
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	901.3
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	187.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	429.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (void)	2025-10-23	197.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	21.6
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	513.6
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	827.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (void)	2025-10-23	87.3
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (void)	2025-10-23	362.1
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	681.6
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	592.2

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	D-Arabinose 5-phosphate_TMS_1	C[Si](C)(C)O[C@H](COP(=O)(O)O)[C@@H](O)[C@H](O)C=O	standard non polar	2025-10-23	2085.16
Gas Chromatography	D-Arabinose 5-phosphate_TMS_2	C[Si](C)(C)O[C@@H]([C@H](O)C=O)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	1779.97
Gas Chromatography	D-Arabinose 5-phosphate_TMS_3	C[Si](C)(C)O[C@H](C=O)[C@H](O)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	2010.83
Gas Chromatography	D-Arabinose 5-phosphate_TMS_4	C[Si](C)(C)OP(=O)(O)OC[C@@H](O)[C@@H](O)[C@H](O)C=O	standard non polar	2025-10-23	2037.4
Gas Chromatography	D-Arabinose 5-phosphate_TMS_5	C[Si](C)(C)OC=C(O)[C@H](O)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	1861.52
Gas Chromatography	D-Arabinose 5-phosphate_TMS_6	C[Si](C)(C)O[C@@H]([C@H](O)C=O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	2208.92
Gas Chromatography	D-Arabinose 5-phosphate_TMS_7	C[Si](C)(C)O[C@H](C=O)[C@H](O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	2037.92
Gas Chromatography	D-Arabinose 5-phosphate_TMS_8	C[Si](C)(C)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@@H](O)[C@H](O)C=O	standard non polar	2025-10-23	2284.64
Gas Chromatography	D-Arabinose 5-phosphate_TMS_9	C[Si](C)(C)OC=C(O)[C@H](O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	2297.86
Gas Chromatography	D-Arabinose 5-phosphate_TMS_10	C[Si](C)(C)O[C@H](C=O)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	1793.44
Gas Chromatography	D-Arabinose 5-phosphate_TMS_11	C[Si](C)(C)O[C@@H]([C@H](O)C=O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	2361.09
Gas Chromatography	D-Arabinose 5-phosphate_TMS_12	C[Si](C)(C)OC=C(O)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	2434.61
Gas Chromatography	D-Arabinose 5-phosphate_TMS_13	C[Si](C)(C)O[C@H](C=O)[C@H](O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	1937.05
Gas Chromatography	D-Arabinose 5-phosphate_TMS_14	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	1593.33
Gas Chromatography	D-Arabinose 5-phosphate_TMS_15	C[Si](C)(C)OP(=O)(OC[C@@H](O)[C@@H](O)[C@H](O)C=O)O[Si](C)(C)C	standard non polar	2025-10-23	1862.24
Gas Chromatography	D-Arabinose 5-phosphate_TMS_16	C[Si](C)(C)OC=C(O)[C@H](O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	1671.19
Gas Chromatography	D-Arabinose 5-phosphate_TMS_17	C[Si](C)(C)O[C@H](C=O)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	2516.12
Gas Chromatography	D-Arabinose 5-phosphate_TMS_18	C[Si](C)(C)O[C@@H]([C@H](O)C=O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2318.42
Gas Chromatography	D-Arabinose 5-phosphate_TMS_19	C[Si](C)(C)OC=C(O)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	2250.02
Gas Chromatography	D-Arabinose 5-phosphate_TMS_20	C[Si](C)(C)O[C@H](C=O)[C@H](O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2022.79
Gas Chromatography	D-Arabinose 5-phosphate_TMS_21	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	2098.42
Gas Chromatography	D-Arabinose 5-phosphate_TMS_22	C[Si](C)(C)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@@H](O)[C@H](O)C=O	standard non polar	2025-10-23	1736.25
Gas Chromatography	D-Arabinose 5-phosphate_TMS_23	C[Si](C)(C)OC=C(O)[C@H](O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1498.15
Gas Chromatography	D-Arabinose 5-phosphate_TMS_24	C[Si](C)(C)O[C@H](C=O)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	2260.16
Gas Chromatography	D-Arabinose 5-phosphate_TMS_25	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	1998.75
Gas Chromatography	D-Arabinose 5-phosphate_TMS_26	C[Si](C)(C)O[C@@H]([C@H](O)C=O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2086.53
Gas Chromatography	D-Arabinose 5-phosphate_TMS_27	C[Si](C)(C)OC=C(O)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	1908.05
Gas Chromatography	D-Arabinose 5-phosphate_TMS_28	C[Si](C)(C)O[C@H](C=O)[C@H](O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1452.67
Gas Chromatography	D-Arabinose 5-phosphate_TMS_29	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	2724.92
Gas Chromatography	D-Arabinose 5-phosphate_TMS_30	C[Si](C)(C)OC=C(O)[C@H](O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2082.11
Gas Chromatography	D-Arabinose 5-phosphate_TMS_31	C[Si](C)(C)O[C@H](C=O)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2103.08
Gas Chromatography	D-Arabinose 5-phosphate_TMS_32	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	2374.54
Gas Chromatography	D-Arabinose 5-phosphate_TMS_33	C[Si](C)(C)O[C@@H]([C@H](O)C=O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1487.1
Gas Chromatography	D-Arabinose 5-phosphate_TMS_34	C[Si](C)(C)OC=C(O)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1802.28
Gas Chromatography	D-Arabinose 5-phosphate_TMS_35	C[Si](C)(C)O[C@H](C=O)[C@H](O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1974.68
Gas Chromatography	D-Arabinose 5-phosphate_TMS_36	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2372.46
Gas Chromatography	D-Arabinose 5-phosphate_TMS_37	C[Si](C)(C)OC=C(O)[C@H](O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2379.59
Gas Chromatography	D-Arabinose 5-phosphate_TMS_38	C[Si](C)(C)O[C@H](C=O)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2018.63
Gas Chromatography	D-Arabinose 5-phosphate_TMS_39	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	2104.11
Gas Chromatography	D-Arabinose 5-phosphate_TMS_40	C[Si](C)(C)OC=C(O)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1911.34
Gas Chromatography	D-Arabinose 5-phosphate_TMS_41	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2702.85
Gas Chromatography	D-Arabinose 5-phosphate_TMS_42	C[Si](C)(C)O[C@H](C=O)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1147.93
Gas Chromatography	D-Arabinose 5-phosphate_TMS_43	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1377.21
Gas Chromatography	D-Arabinose 5-phosphate_TMS_44	C[Si](C)(C)OC=C(O)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1845.4
Gas Chromatography	D-Arabinose 5-phosphate_TMS_45	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1725.9
Gas Chromatography	D-Arabinose 5-phosphate_TMS_46	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1819.86
Gas Chromatography	D-Arabinose 5-phosphate_TMS_47	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1645.44
Gas Chromatography	D-Arabinose 5-phosphate_TMS_1	C[Si](C)(C)O[C@H](COP(=O)(O)O)[C@@H](O)[C@H](O)C=O	standard polar	2025-10-23	2226.51
Gas Chromatography	D-Arabinose 5-phosphate_TMS_2	C[Si](C)(C)O[C@@H]([C@H](O)C=O)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	1295.15
Gas Chromatography	D-Arabinose 5-phosphate_TMS_3	C[Si](C)(C)O[C@H](C=O)[C@H](O)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	2543.1
Gas Chromatography	D-Arabinose 5-phosphate_TMS_4	C[Si](C)(C)OP(=O)(O)OC[C@@H](O)[C@@H](O)[C@H](O)C=O	standard polar	2025-10-23	2465.63
Gas Chromatography	D-Arabinose 5-phosphate_TMS_5	C[Si](C)(C)OC=C(O)[C@H](O)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	1864.58
Gas Chromatography	D-Arabinose 5-phosphate_TMS_6	C[Si](C)(C)O[C@@H]([C@H](O)C=O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	2081.91
Gas Chromatography	D-Arabinose 5-phosphate_TMS_7	C[Si](C)(C)O[C@H](C=O)[C@H](O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	2169.94
Gas Chromatography	D-Arabinose 5-phosphate_TMS_8	C[Si](C)(C)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@@H](O)[C@H](O)C=O	standard polar	2025-10-23	2355.63
Gas Chromatography	D-Arabinose 5-phosphate_TMS_9	C[Si](C)(C)OC=C(O)[C@H](O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	2007.25
Gas Chromatography	D-Arabinose 5-phosphate_TMS_10	C[Si](C)(C)O[C@H](C=O)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	2182.46
Gas Chromatography	D-Arabinose 5-phosphate_TMS_11	C[Si](C)(C)O[C@@H]([C@H](O)C=O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	2432.64
Gas Chromatography	D-Arabinose 5-phosphate_TMS_12	C[Si](C)(C)OC=C(O)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	1828.95
Gas Chromatography	D-Arabinose 5-phosphate_TMS_13	C[Si](C)(C)O[C@H](C=O)[C@H](O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	2522.86
Gas Chromatography	D-Arabinose 5-phosphate_TMS_14	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	2203.04
Gas Chromatography	D-Arabinose 5-phosphate_TMS_15	C[Si](C)(C)OP(=O)(OC[C@@H](O)[C@@H](O)[C@H](O)C=O)O[Si](C)(C)C	standard polar	2025-10-23	1964.06
Gas Chromatography	D-Arabinose 5-phosphate_TMS_16	C[Si](C)(C)OC=C(O)[C@H](O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	1976.8
Gas Chromatography	D-Arabinose 5-phosphate_TMS_17	C[Si](C)(C)O[C@H](C=O)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	1501.54
Gas Chromatography	D-Arabinose 5-phosphate_TMS_18	C[Si](C)(C)O[C@@H]([C@H](O)C=O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2600.27
Gas Chromatography	D-Arabinose 5-phosphate_TMS_19	C[Si](C)(C)OC=C(O)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	1839.27
Gas Chromatography	D-Arabinose 5-phosphate_TMS_20	C[Si](C)(C)O[C@H](C=O)[C@H](O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1984.25
Gas Chromatography	D-Arabinose 5-phosphate_TMS_21	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	2249.05
Gas Chromatography	D-Arabinose 5-phosphate_TMS_22	C[Si](C)(C)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@@H](O)[C@H](O)C=O	standard polar	2025-10-23	1755.16
Gas Chromatography	D-Arabinose 5-phosphate_TMS_23	C[Si](C)(C)OC=C(O)[C@H](O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1789.15
Gas Chromatography	D-Arabinose 5-phosphate_TMS_24	C[Si](C)(C)O[C@H](C=O)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	1922.7
Gas Chromatography	D-Arabinose 5-phosphate_TMS_25	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	3061.62
Gas Chromatography	D-Arabinose 5-phosphate_TMS_26	C[Si](C)(C)O[C@@H]([C@H](O)C=O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2468.21
Gas Chromatography	D-Arabinose 5-phosphate_TMS_27	C[Si](C)(C)OC=C(O)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	1911.59
Gas Chromatography	D-Arabinose 5-phosphate_TMS_28	C[Si](C)(C)O[C@H](C=O)[C@H](O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2109.3
Gas Chromatography	D-Arabinose 5-phosphate_TMS_29	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	2062.69
Gas Chromatography	D-Arabinose 5-phosphate_TMS_30	C[Si](C)(C)OC=C(O)[C@H](O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1875.21
Gas Chromatography	D-Arabinose 5-phosphate_TMS_31	C[Si](C)(C)O[C@H](C=O)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2432.51
Gas Chromatography	D-Arabinose 5-phosphate_TMS_32	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	2079.43
Gas Chromatography	D-Arabinose 5-phosphate_TMS_33	C[Si](C)(C)O[C@@H]([C@H](O)C=O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1797.84
Gas Chromatography	D-Arabinose 5-phosphate_TMS_34	C[Si](C)(C)OC=C(O)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2321.39
Gas Chromatography	D-Arabinose 5-phosphate_TMS_35	C[Si](C)(C)O[C@H](C=O)[C@H](O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1889.1
Gas Chromatography	D-Arabinose 5-phosphate_TMS_36	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1822.88
Gas Chromatography	D-Arabinose 5-phosphate_TMS_37	C[Si](C)(C)OC=C(O)[C@H](O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1682.88
Gas Chromatography	D-Arabinose 5-phosphate_TMS_38	C[Si](C)(C)O[C@H](C=O)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1948.75
Gas Chromatography	D-Arabinose 5-phosphate_TMS_39	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	1782.98
Gas Chromatography	D-Arabinose 5-phosphate_TMS_40	C[Si](C)(C)OC=C(O)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2477.64
Gas Chromatography	D-Arabinose 5-phosphate_TMS_41	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1204.13
Gas Chromatography	D-Arabinose 5-phosphate_TMS_42	C[Si](C)(C)O[C@H](C=O)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1185.39
Gas Chromatography	D-Arabinose 5-phosphate_TMS_43	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1888.13
Gas Chromatography	D-Arabinose 5-phosphate_TMS_44	C[Si](C)(C)OC=C(O)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1772.18
Gas Chromatography	D-Arabinose 5-phosphate_TMS_45	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2582.13
Gas Chromatography	D-Arabinose 5-phosphate_TMS_46	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	507.21
Gas Chromatography	D-Arabinose 5-phosphate_TMS_47	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2378.54

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Feces
Prostate

Tissue Locations

Prostate

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

This table shows at most 5 pathways. For the full list of associated pathways:

See All Associated Bacterial Pathways

Name	SMPDB/PathBank	Species
Lipopolysaccharide Biosynthesis		Escherichia coli UTI89 Escherichia coli 55989 Escherichia coli SE11 Klebsiella pneumoniae Salmonella enterica Citrobacter koseri Proteus mirabilis Shigella boydii Sodalis glossinidius Escherichia albertii Bacteroides fluxus Klebsiella variicola Actinobacillus pleuropneumoniae serovar 3 str. JL03 Citrobacter koseri ATCC BAA-895 Enterobacter cloacae subsp. cloacae ATCC 13047 Escherichia coli O127:H6 str. E2348/69 Escherichia coli ED1a Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Pseudomonas fluorescens Pf0-1 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Dublin str. CT02021853 Bacteroides fluxus YIT 12057 Laribacter hongkongensis Cedecea davisae Cedecea davisae DSM 4568 Citrobacter amalonaticus Citrobacter amalonaticus Y19 Escherichia albertii TW07627 Salmonella Salmonella enterica subsp. enterica serovar Typhimurium Tatumella ptyseos Tatumella ptyseos ATCC 33301 Hafnia alvei Hafnia alvei ATCC 51873 Providencia rustigianii DSM 4541 Serratia marcescens subsp. marcescens Db11 Klebsiella aerogenes KCTC 2190 Citrobacter rodentium ICC168 Cronobacter turicensis z3032 Erwinia tasmaniensis Et1/99 Erwinia amylovora CFBP1430 Methylobacillus flagellatus KT Sodalis glossinidius str. 'morsitans' Psychromonas ingrahamii 37 Salmonella enterica subsp. enterica serovar Paratyphi A str. Klebsiella michiganensis KCTC 1686
Lipopolysaccharide Biosynthesis (1-Octadecanoyl-rac-glycerol)		Escherichia coli SMS-3-5 Escherichia coli UTI89 Escherichia coli 55989 Escherichia coli SE11 Klebsiella pneumoniae Pseudomonas fluorescens Pf-5 Salmonella enterica Campylobacter fetus subsp. fetus 82-40 Campylobacter rectus Pseudomonas fluorescens Pseudomonas putida Citrobacter koseri Proteus mirabilis Shigella boydii Campylobacter upsaliensis Helicobacter pullorum Escherichia albertii Klebsiella variicola Actinobacillus pleuropneumoniae serovar 3 str. JL03 Citrobacter koseri ATCC BAA-895 Enterobacter cloacae subsp. cloacae ATCC 13047 Escherichia coli O127:H6 str. E2348/69 Escherichia coli ED1a Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Pseudomonas putida KT2440 Pseudomonas fluorescens Pf0-1 Pseudomonas fluorescens SBW25 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Dublin str. CT02021853 Stenotrophomonas maltophilia R551-3 Cetobacterium somerae ATCC BAA-474 Parasutterella excrementihominis YIT 11859 Campylobacter rectus RM3267 Campylobacter upsaliensis JV21 Helicobacter pullorum MIT 98-5489 Aeromonas veronii Cedecea davisae Cedecea davisae DSM 4568 Citrobacter amalonaticus Citrobacter amalonaticus Y19 Escherichia albertii TW07627 Salmonella Salmonella enterica subsp. enterica serovar Typhimurium Tatumella ptyseos Tatumella ptyseos ATCC 33301 Hafnia alvei Hafnia alvei ATCC 51873 Providencia rustigianii DSM 4541 Klebsiella aerogenes KCTC 2190 Azotobacter vinelandii DJ
Lipopolysaccharide Biosynthesis (1,2-Diacyl-sn-glycerol (dihexadec-9-enoyl, n-C16:1))		Escherichia coli SMS-3-5 Escherichia coli UTI89 Escherichia coli 55989 Escherichia coli SE11 Klebsiella pneumoniae Pseudomonas fluorescens Pf-5 Salmonella enterica Campylobacter fetus subsp. fetus 82-40 Campylobacter rectus Pseudomonas fluorescens Pseudomonas putida Citrobacter koseri Proteus mirabilis Shigella boydii Campylobacter upsaliensis Helicobacter pullorum Escherichia albertii Klebsiella variicola Actinobacillus pleuropneumoniae serovar 3 str. JL03 Citrobacter koseri ATCC BAA-895 Enterobacter cloacae subsp. cloacae ATCC 13047 Escherichia coli O127:H6 str. E2348/69 Escherichia coli ED1a Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Pseudomonas putida KT2440 Pseudomonas fluorescens Pf0-1 Pseudomonas fluorescens SBW25 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Dublin str. CT02021853 Stenotrophomonas maltophilia R551-3 Cetobacterium somerae ATCC BAA-474 Parasutterella excrementihominis YIT 11859 Campylobacter rectus RM3267 Campylobacter upsaliensis JV21 Helicobacter pullorum MIT 98-5489 Aeromonas veronii Cedecea davisae Cedecea davisae DSM 4568 Citrobacter amalonaticus Citrobacter amalonaticus Y19 Escherichia albertii TW07627 Salmonella Salmonella enterica subsp. enterica serovar Typhimurium Tatumella ptyseos Tatumella ptyseos ATCC 33301 Hafnia alvei Hafnia alvei ATCC 51873 Providencia rustigianii DSM 4541 Klebsiella aerogenes KCTC 2190 Azotobacter vinelandii DJ
Lipopolysaccharide Biosynthesis (1,2-Diacyl-sn-glycerol (dioctadec-11-enoyl, n-C18:1))		Escherichia coli SMS-3-5 Escherichia coli UTI89 Escherichia coli 55989 Escherichia coli SE11 Klebsiella pneumoniae Pseudomonas fluorescens Pf-5 Salmonella enterica Campylobacter fetus subsp. fetus 82-40 Campylobacter rectus Pseudomonas fluorescens Pseudomonas putida Citrobacter koseri Proteus mirabilis Shigella boydii Campylobacter upsaliensis Helicobacter pullorum Escherichia albertii Klebsiella variicola Actinobacillus pleuropneumoniae serovar 3 str. JL03 Citrobacter koseri ATCC BAA-895 Enterobacter cloacae subsp. cloacae ATCC 13047 Escherichia coli O127:H6 str. E2348/69 Escherichia coli ED1a Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Pseudomonas putida KT2440 Pseudomonas fluorescens Pf0-1 Pseudomonas fluorescens SBW25 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Dublin str. CT02021853 Stenotrophomonas maltophilia R551-3 Cetobacterium somerae ATCC BAA-474 Parasutterella excrementihominis YIT 11859 Campylobacter rectus RM3267 Campylobacter upsaliensis JV21 Helicobacter pullorum MIT 98-5489 Aeromonas veronii Cedecea davisae Cedecea davisae DSM 4568 Citrobacter amalonaticus Citrobacter amalonaticus Y19 Escherichia albertii TW07627 Salmonella Salmonella enterica subsp. enterica serovar Typhimurium Tatumella ptyseos Tatumella ptyseos ATCC 33301 Hafnia alvei Hafnia alvei ATCC 51873 Providencia rustigianii DSM 4541 Klebsiella aerogenes KCTC 2190 Azotobacter vinelandii DJ
Lipopolysaccharide Biosynthesis (1,2-Diacyl-sn-glycerol (ditetradec-7-enoyl, n-C14:1))		Escherichia coli SMS-3-5 Escherichia coli UTI89 Escherichia coli 55989 Escherichia coli SE11 Klebsiella pneumoniae Pseudomonas fluorescens Pf-5 Salmonella enterica Campylobacter fetus subsp. fetus 82-40 Campylobacter rectus Pseudomonas fluorescens Pseudomonas putida Citrobacter koseri Proteus mirabilis Shigella boydii Campylobacter upsaliensis Helicobacter pullorum Escherichia albertii Klebsiella variicola Actinobacillus pleuropneumoniae serovar 3 str. JL03 Citrobacter koseri ATCC BAA-895 Enterobacter cloacae subsp. cloacae ATCC 13047 Escherichia coli O127:H6 str. E2348/69 Escherichia coli ED1a Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Pseudomonas putida KT2440 Pseudomonas fluorescens Pf0-1 Pseudomonas fluorescens SBW25 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Dublin str. CT02021853 Stenotrophomonas maltophilia R551-3 Cetobacterium somerae ATCC BAA-474 Parasutterella excrementihominis YIT 11859 Campylobacter rectus RM3267 Campylobacter upsaliensis JV21 Helicobacter pullorum MIT 98-5489 Aeromonas veronii Cedecea davisae Cedecea davisae DSM 4568 Citrobacter amalonaticus Citrobacter amalonaticus Y19 Escherichia albertii TW07627 Salmonella Salmonella enterica subsp. enterica serovar Typhimurium Tatumella ptyseos Tatumella ptyseos ATCC 33301 Hafnia alvei Hafnia alvei ATCC 51873 Providencia rustigianii DSM 4541 Klebsiella aerogenes KCTC 2190 Azotobacter vinelandii DJ

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0018381	Phosphoenolpyruvic acid	3-Deoxy-D-manno-octulosonate 8-phosphate	2-dehydro-3-deoxyphosphooctonate aldolase	Aldol addition (or reverse)	PathBank	31602464

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	6	Human feces; Human sputum; Human ; Human unknown; Pig ; Human pleural fluid plaque; Human dental plaque; Human nasal swab; Human feces; pleural fluid plaque; bal; Cattle ; Rat ; Turkey ; Sheep ; Lion ; Chicken ; American dog tick	Unknown; Metabolic reconstruction
Bacteria/Eubacteria	Proteobacteria	440	Human feces; Human sputum; Human ; Human unknown; Pig ; Human pleural fluid plaque; Human dental plaque; Human nasal swab; Human feces; pleural fluid plaque; bal; Cattle ; Rat ; Turkey ; Sheep ; Lion ; Chicken ; American dog tick	Unknown; Metabolic reconstruction
Bacteria/Eubacteria	Firmicutes	93	Pig ; Human feces; Human ; Cattle	Metabolic reconstruction
Bacteria/Eubacteria	Verrucomicrobia	1	Human ; Human feces	Metabolic reconstruction
Bacteria/Eubacteria	Bacteroidetes	113	Human feces; Human appendix biopsy; Human ; Human saliva; Human gastric fluid; Human urine; Human subgingival plaque; Human supragingival plaque	Metabolic reconstruction
Bacteria	Synergistetes	1	Human feces	Metabolic reconstruction
Bacteria/Eubacteria	Actinobacteria	3	Human ; Human feces	Metabolic reconstruction
Bacteria/Eubacteria	Spirochaetes	3	Human feces	Metabolic reconstruction
Bacteria/Eubacteria	Fusobacteria	19	Human feces; Human	Metabolic reconstruction
Bacteria/Eubacteria	Synergistetes	2	Human feces	Metabolic reconstruction
Bacteria/Eubacteria	Planctomycetes	2	Human feces	Metabolic reconstruction
Archaea	Crenarchaeota	1		Metabolic reconstruction
Bacteria/Eubacteria	Cyanobacteria	7
Bacteria/Eubacteria	Aquificae	1
Bacteria/Eubacteria	Chlamydiae	11	Human ; Sheep ; Cat ; Birds
Bacteria/Eubacteria	Acidobacteria	1

Exposure Sources

Other Exposures

Source Type	Data Source	Reference
Drugs - Antimicrobial	U.S. Environmental Protection Agency	CompTox
Cosmetics	U.S. Environmental Protection Agency	CompTox
Domestics	U.S. Environmental Protection Agency	CompTox

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified									HMDB
Human Prostate	Detected but not Quantified						Not Specified	Not Specified	Normal	HMDB	34986597

External Links

HMDB ID

HMDB0011734

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB028414

KNApSAcK ID

Not Available

Chemspider ID

163687

KEGG Compound ID

C01112

BioCyc ID

ARABINOSE-5P

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

188324

PDB ID

Not Available

ChEBI ID

16241

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Sreekumar A, Poisson LM, Rajendiran TM, Khan AP, Cao Q, Yu J, Laxman B, Mehra R, Lonigro RJ, Li Y, Nyati MK, Ahsan A, Kalyana-Sundaram S, Han B, Cao X, Byun J, Omenn GS, Ghosh D, Pennathur S, Alexander DC, Berger A, Shuster JR, Wei JT, Varambally S, Beecher C, Chinnaiyan AM: Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression. Nature. 2009 Feb 12;457(7231):910-4. doi: 10.1038/nature07762. [PubMed:19212411 ]

Showing metabocard for D-Arabinose 5-phosphate (MMDBc0029914)

MOL for #<Metabolite:0x00007f9ac2806010>

3D MOL for #<Metabolite:0x00007f9ac2806010>

3D SDF for #<Metabolite:0x00007f9ac2806010>

3D-SDF for #<Metabolite:0x00007f9ac2806010>

PDB for #<Metabolite:0x00007f9ac2806010>

3D PDB for #<Metabolite:0x00007f9ac2806010>

SMILES for #<Metabolite:0x00007f9ac2806010>

INCHI for #<Metabolite:0x00007f9ac2806010>

Structure for #<Metabolite:0x00007f9ac2806010>

3D Structure for #<Metabolite:0x00007f9ac2806010>