| MMDBm0000006 | Acinetobacter baumannii | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000023 | Arcobacter butzleri RM4018 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000028 | Bacillus halodurans C-125 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000057 | Bacteroides vulgatus ATCC 8482 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000075 | Bifidobacterium longum DJO10A | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000076 | Bifidobacterium longum NCC2705 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000100 | Campylobacter fetus subsp. fetus 82-40 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000101 | Campylobacter hominis ATCC BAA-381 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000132 | Clostridium perfringens ATCC 13124 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000160 | Escherichia coli | Eubacteria | Proteobacteria | Human | Unknown | ECMDB |
| MMDBm0000162 | Escherichia coli CFT073 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000167 | Escherichia coli SMS-3-5 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000198 | Lachnoclostridium phytofermentans ISDg | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000213 | Leuconostoc citreum KM20 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000232 | Parabacteroides distasonis ATCC 8503 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000243 | Porphyromonas gingivalis ATCC 33277 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000282 | Streptococcus thermophilus LMD-9 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000340 | Azotobacter vinelandii | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0000343 | Sinorhizobium meliloti | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0000368 | Shigella flexneri | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000525 | Mycolicibacterium smegmatis | Eubacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0000527 | Streptomyces griseus | Eubacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0001162 | Acaryochloris marina MBIC11017 | Eubacteria | Cyanobacteria | Not Available | Not Available | RHEA |
| MMDBm0001165 | Acholeplasma laidlawii PG-8A | Eubacteria | Tenericutes | Not Available | Not Available | RHEA |
