MiMeDB: Showing metabocard for Secondary alcohol (MMDBc0031946)

Pharmaceutical

Xenobiotic

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-11-18 01:56:05 UTC

Update Date

2024-10-09 20:31:22 UTC

Metabolite ID

MMDBc0031946

Metabolite Identification

Common Name

Secondary alcohol

Description

A secondary alcohol is a compound in which a hydroxy group, ‚ÄíOH, is attached to a saturated carbon atom which has two other carbon atoms attached to it.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Not Available

Molecular Formula

C₂₂H₂₉N₇O₅

Average Mass

471.5096

Monoisotopic Mass

471.223017073

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

Not Available

InChI Identifier

InChI=1S/C22H29N7O5/c1-28(2)19-17-20(25-10-24-19)29(11-26-17)22-18(31)16(15(9-30)34-22)27-21(32)14(23)8-12-4-6-13(33-3)7-5-12/h4-7,10-11,14-16,18,22,30-31H,8-9,23H2,1-3H3,(H,27,32)/t14-,15+,16+,18+,22+/m0/s1

InChI Key

RXWNCPJZOCPEPQ-NVWDDTSBSA-N

Chemical Taxonomy

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Not Available

Spectra

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-23	262.9
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	171.1
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-23	346.9
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	357.5
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	356.1
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-23	180.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	1870.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	684.4
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	300.8
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	189.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	342.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	167.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	155.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	19.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	386.5
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	90.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	243.3
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	964.2
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	783.0

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	Secondary alcohol_TMS_1	COC1=CC=C(C[C@H](N)C(=O)N[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)C=C1	standard non polar	2025-10-24	2611.53
Gas Chromatography	Secondary alcohol_TMS_2	COC1=CC=C(C[C@H](N)C(=O)N[C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)C=C1	standard non polar	2025-10-24	1920.93
Gas Chromatography	Secondary alcohol_TMS_3	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N[C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)C=C1	standard non polar	2025-10-24	1861.21
Gas Chromatography	Secondary alcohol_TMS_4	COC1=CC=C(C[C@H](N)C(=O)N([C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	697.844
Gas Chromatography	Secondary alcohol_TMS_5	COC1=CC=C(C[C@H](N)C(=O)N[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)C=C1	standard non polar	2025-10-24	2441.6
Gas Chromatography	Secondary alcohol_TMS_6	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)C=C1	standard non polar	2025-10-24	2620.49
Gas Chromatography	Secondary alcohol_TMS_7	COC1=CC=C(C[C@H](N)C(=O)N([C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	2611.23
Gas Chromatography	Secondary alcohol_TMS_8	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N[C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)C=C1	standard non polar	2025-10-24	1740.21
Gas Chromatography	Secondary alcohol_TMS_9	COC1=CC=C(C[C@H](N)C(=O)N([C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	684.541
Gas Chromatography	Secondary alcohol_TMS_10	COC1=CC=C(C[C@@H](C(=O)N[C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	2081.9
Gas Chromatography	Secondary alcohol_TMS_11	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N([C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	2258.59
Gas Chromatography	Secondary alcohol_TMS_12	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)C=C1	standard non polar	2025-10-24	1718.77
Gas Chromatography	Secondary alcohol_TMS_13	COC1=CC=C(C[C@H](N)C(=O)N([C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	2642.13
Gas Chromatography	Secondary alcohol_TMS_14	COC1=CC=C(C[C@@H](C(=O)N[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	1828.38
Gas Chromatography	Secondary alcohol_TMS_15	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N([C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	3534.89
Gas Chromatography	Secondary alcohol_TMS_16	COC1=CC=C(C[C@@H](C(=O)N[C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	2597.34
Gas Chromatography	Secondary alcohol_TMS_17	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N([C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	1430.07
Gas Chromatography	Secondary alcohol_TMS_18	COC1=CC=C(C[C@@H](C(=O)N([C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	504.516
Gas Chromatography	Secondary alcohol_TMS_19	COC1=CC=C(C[C@@H](C(=O)N[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	2098.96
Gas Chromatography	Secondary alcohol_TMS_20	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N([C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	323.757
Gas Chromatography	Secondary alcohol_TMS_21	COC1=CC=C(C[C@@H](C(=O)N([C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	2579.7
Gas Chromatography	Secondary alcohol_TMS_22	COC1=CC=C(C[C@@H](C(=O)N([C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	2175.48
Gas Chromatography	Secondary alcohol_TMS_23	COC1=CC=C(C[C@@H](C(=O)N([C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard non polar	2025-10-24	2412.3
Gas Chromatography	Secondary alcohol_TMS_1	COC1=CC=C(C[C@H](N)C(=O)N[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)C=C1	standard polar	2025-10-24	1971.54
Gas Chromatography	Secondary alcohol_TMS_2	COC1=CC=C(C[C@H](N)C(=O)N[C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)C=C1	standard polar	2025-10-24	2132.44
Gas Chromatography	Secondary alcohol_TMS_3	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N[C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)C=C1	standard polar	2025-10-24	3299.99
Gas Chromatography	Secondary alcohol_TMS_4	COC1=CC=C(C[C@H](N)C(=O)N([C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)[Si](C)(C)C)C=C1	standard polar	2025-10-24	1193.77
Gas Chromatography	Secondary alcohol_TMS_5	COC1=CC=C(C[C@H](N)C(=O)N[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)C=C1	standard polar	2025-10-24	1886.19
Gas Chromatography	Secondary alcohol_TMS_6	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)C=C1	standard polar	2025-10-24	2031.98
Gas Chromatography	Secondary alcohol_TMS_7	COC1=CC=C(C[C@H](N)C(=O)N([C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)[Si](C)(C)C)C=C1	standard polar	2025-10-24	1207.74
Gas Chromatography	Secondary alcohol_TMS_8	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N[C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)C=C1	standard polar	2025-10-24	2885.9
Gas Chromatography	Secondary alcohol_TMS_9	COC1=CC=C(C[C@H](N)C(=O)N([C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)[Si](C)(C)C)C=C1	standard polar	2025-10-24	492.699
Gas Chromatography	Secondary alcohol_TMS_10	COC1=CC=C(C[C@@H](C(=O)N[C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard polar	2025-10-24	1343.3
Gas Chromatography	Secondary alcohol_TMS_11	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N([C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)[Si](C)(C)C)C=C1	standard polar	2025-10-24	2224.67
Gas Chromatography	Secondary alcohol_TMS_12	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)C=C1	standard polar	2025-10-24	1366.95
Gas Chromatography	Secondary alcohol_TMS_13	COC1=CC=C(C[C@H](N)C(=O)N([C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)[Si](C)(C)C)C=C1	standard polar	2025-10-24	864.071
Gas Chromatography	Secondary alcohol_TMS_14	COC1=CC=C(C[C@@H](C(=O)N[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard polar	2025-10-24	1920.43
Gas Chromatography	Secondary alcohol_TMS_15	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N([C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)[Si](C)(C)C)C=C1	standard polar	2025-10-24	1402.45
Gas Chromatography	Secondary alcohol_TMS_16	COC1=CC=C(C[C@@H](C(=O)N[C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard polar	2025-10-24	1800.8
Gas Chromatography	Secondary alcohol_TMS_17	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N([C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)[Si](C)(C)C)C=C1	standard polar	2025-10-24	2097.2
Gas Chromatography	Secondary alcohol_TMS_18	COC1=CC=C(C[C@@H](C(=O)N([C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard polar	2025-10-24	948.176
Gas Chromatography	Secondary alcohol_TMS_19	COC1=CC=C(C[C@@H](C(=O)N[C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard polar	2025-10-24	2839.06
Gas Chromatography	Secondary alcohol_TMS_20	COC1=CC=C(C[C@H](N[Si](C)(C)C)C(=O)N([C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)[Si](C)(C)C)C=C1	standard polar	2025-10-24	3263.45
Gas Chromatography	Secondary alcohol_TMS_21	COC1=CC=C(C[C@@H](C(=O)N([C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O)[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard polar	2025-10-24	2154.88
Gas Chromatography	Secondary alcohol_TMS_22	COC1=CC=C(C[C@@H](C(=O)N([C@@H]2[C@@H](CO)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard polar	2025-10-24	3556.66
Gas Chromatography	Secondary alcohol_TMS_23	COC1=CC=C(C[C@@H](C(=O)N([C@@H]2[C@@H](CO[Si](C)(C)C)O[C@@H](N3C=NC4=C(N(C)C)N=CN=C43)[C@@H]2O[Si](C)(C)C)[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)C=C1	standard polar	2025-10-24	1140.13

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Proteobacteria	1	Human ; Human feces; Human feces; pleural fluid plaque; bal	Unknown
Bacteria/Eubacteria	Actinobacteria	1

Exposure Sources

Other Exposures

Source Type	Data Source	Reference
Drugs - Antimicrobial	U.S. Environmental Protection Agency	CompTox
Cosmetics	U.S. Environmental Protection Agency	CompTox
Domestics	U.S. Environmental Protection Agency	CompTox

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for Secondary alcohol (MMDBc0031946)

MOL for #<Metabolite:0x00007f9aae062700>

3D MOL for #<Metabolite:0x00007f9aae062700>

3D SDF for #<Metabolite:0x00007f9aae062700>

3D-SDF for #<Metabolite:0x00007f9aae062700>

PDB for #<Metabolite:0x00007f9aae062700>

3D PDB for #<Metabolite:0x00007f9aae062700>

SMILES for #<Metabolite:0x00007f9aae062700>

INCHI for #<Metabolite:0x00007f9aae062700>

Structure for #<Metabolite:0x00007f9aae062700>

3D Structure for #<Metabolite:0x00007f9aae062700>