MiMeDB: Showing metabocard for Alpha Biliverdin (MMDBc0032867)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-18 22:03:42 UTC

Update Date

2022-08-31 21:44:42 UTC

Metabolite ID

MMDBc0032867

Metabolite Identification

Common Name

Alpha Biliverdin

Description

A linear tetrapyrrole produced in the reticuloendothelial system by the first step of heme degradation, catalysed by heme oxygenase.

Structure

MOL SDF PDB SMILES InChI


  Mrv0541 05041400562D          

 46 49  0  0  0  0            999 V2000
   13.5272   -3.9752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7387    1.6281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9052    0.1606    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5949   -1.9195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3965   -6.1416    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.6042   -5.6158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7068   -4.0614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4531    1.2156    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4073   -3.7046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6016   -6.1416    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6929   -3.2921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7812   -6.0554    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3506   -1.5464    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9511   -4.4346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0470   -4.4346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1206   -0.0943    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2080   -2.4716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9116   -5.4742    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7837   -5.5296    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3712   -4.8151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4531    0.3906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1218   -3.2921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0866   -5.4742    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0150   -2.3001    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1665   -4.6895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8656   -0.8789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5642   -4.9866    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8755   -3.6276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8316   -4.6895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9784   -3.7046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2962   -6.7228    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2317   -6.1427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7857   -0.0943    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4275   -3.0145    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.4991   -4.2046    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.0406   -0.8789    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   11.4780   -5.8071    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.9784   -4.5296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2639   -3.2921    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6318   -7.4765    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4758   -6.6366    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.4032   -6.9496    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0011    0.1606    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.1711   -1.4601    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.1227   -3.6276    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4339   -4.9866    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  7  1  2  0  0  0  0
  8  2  2  0  0  0  0
 11  9  1  0  0  0  0
 12 10  1  0  0  0  0
 16  3  1  0  0  0  0
 17  4  1  0  0  0  0
 18  5  1  0  0  0  0
 19  6  1  0  0  0  0
 20  7  1  0  0  0  0
 20 19  2  0  0  0  0
 21  8  1  0  0  0  0
 21 16  2  0  0  0  0
 22  9  1  0  0  0  0
 22 17  1  0  0  0  0
 23 10  1  0  0  0  0
 23 18  2  0  0  0  0
 24 13  1  0  0  0  0
 24 17  2  0  0  0  0
 25 14  1  0  0  0  0
 25 18  1  0  0  0  0
 26 13  2  0  0  0  0
 26 16  1  0  0  0  0
 27 14  2  0  0  0  0
 27 20  1  0  0  0  0
 28 15  1  0  0  0  0
 28 22  2  0  0  0  0
 29 15  2  0  0  0  0
 29 23  1  0  0  0  0
 30 11  1  0  0  0  0
 31 12  1  0  0  0  0
 32 19  1  0  0  0  0
 33 21  1  0  0  0  0
 34 24  1  0  0  0  0
 34 28  1  0  0  0  0
 35 25  2  0  0  0  0
 35 29  1  0  0  0  0
 36 26  1  0  0  0  0
 36 33  2  0  0  0  0
 37 27  1  0  0  0  0
 37 32  2  0  0  0  0
 38 30  2  0  0  0  0
 39 30  1  0  0  0  0
 40 31  2  0  0  0  0
 41 31  1  0  0  0  0
 42 32  1  0  0  0  0
 43 33  1  0  0  0  0
 44 13  1  0  0  0  0
 45 14  1  0  0  0  0
 46 15  1  0  0  0  0
M  END


  Mrv0541 05041400562D          

 46 49  0  0  0  0            999 V2000
   13.5272   -3.9752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7387    1.6281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9052    0.1606    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5949   -1.9195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3965   -6.1416    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.6042   -5.6158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7068   -4.0614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4531    1.2156    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4073   -3.7046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6016   -6.1416    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6929   -3.2921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7812   -6.0554    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3506   -1.5464    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9511   -4.4346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0470   -4.4346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1206   -0.0943    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2080   -2.4716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9116   -5.4742    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7837   -5.5296    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3712   -4.8151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4531    0.3906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1218   -3.2921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0866   -5.4742    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0150   -2.3001    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1665   -4.6895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8656   -0.8789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5642   -4.9866    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8755   -3.6276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8316   -4.6895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9784   -3.7046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2962   -6.7228    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2317   -6.1427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7857   -0.0943    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4275   -3.0145    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.4991   -4.2046    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.0406   -0.8789    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   11.4780   -5.8071    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.9784   -4.5296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2639   -3.2921    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6318   -7.4765    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4758   -6.6366    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.4032   -6.9496    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0011    0.1606    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.1711   -1.4601    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.1227   -3.6276    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4339   -4.9866    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  7  1  2  0  0  0  0
  8  2  2  0  0  0  0
 11  9  1  0  0  0  0
 12 10  1  0  0  0  0
 16  3  1  0  0  0  0
 17  4  1  0  0  0  0
 18  5  1  0  0  0  0
 19  6  1  0  0  0  0
 20  7  1  0  0  0  0
 20 19  2  0  0  0  0
 21  8  1  0  0  0  0
 21 16  2  0  0  0  0
 22  9  1  0  0  0  0
 22 17  1  0  0  0  0
 23 10  1  0  0  0  0
 23 18  2  0  0  0  0
 24 13  1  0  0  0  0
 24 17  2  0  0  0  0
 25 14  1  0  0  0  0
 25 18  1  0  0  0  0
 26 13  2  0  0  0  0
 26 16  1  0  0  0  0
 27 14  2  0  0  0  0
 27 20  1  0  0  0  0
 28 15  1  0  0  0  0
 28 22  2  0  0  0  0
 29 15  2  0  0  0  0
 29 23  1  0  0  0  0
 30 11  1  0  0  0  0
 31 12  1  0  0  0  0
 32 19  1  0  0  0  0
 33 21  1  0  0  0  0
 34 24  1  0  0  0  0
 34 28  1  0  0  0  0
 35 25  2  0  0  0  0
 35 29  1  0  0  0  0
 36 26  1  0  0  0  0
 36 33  2  0  0  0  0
 37 27  1  0  0  0  0
 37 32  2  0  0  0  0
 38 30  2  0  0  0  0
 39 30  1  0  0  0  0
 40 31  2  0  0  0  0
 41 31  1  0  0  0  0
 42 32  1  0  0  0  0
 43 33  1  0  0  0  0
 44 13  1  0  0  0  0
 45 14  1  0  0  0  0
 46 15  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0032867

> <DATABASE_NAME>
MIME

> <SMILES>
[H]\C(C1=C(C)C(CCC(O)=O)=C(N1)C(\[H])=C1/N=C(/C(/[H])=C2\N=C(O)C(C)=C2C=C)C(C)=C1CCC(O)=O)=C1\N=C(O)C(C=C)=C1C

> <INCHI_IDENTIFIER>
InChI=1S/C33H34N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,13-15,34H,1-2,9-12H2,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b26-13-,27-14-,29-15-

> <INCHI_KEY>
GWZYPXHJIZCRAJ-SRVCBVSDSA-N

> <FORMULA>
C33H34N4O6

> <MOLECULAR_WEIGHT>
582.6463

> <EXACT_MASS>
582.24783484

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_AVERAGE_POLARIZABILITY>
65.67225254148735

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-(2-{[(2Z)-3-(2-carboxyethyl)-5-{[(2Z)-3-ethenyl-5-hydroxy-4-methyl-2H-pyrrol-2-ylidene]methyl}-4-methyl-2H-pyrrol-2-ylidene]methyl}-5-{[(2Z)-4-ethenyl-5-hydroxy-3-methyl-2H-pyrrol-2-ylidene]methyl}-4-methyl-1H-pyrrol-3-yl)propanoic acid

> <ALOGPS_LOGP>
3.21

> <JCHEM_LOGP>
1.735832290823272

> <ALOGPS_LOGS>
-4.65

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
4.196690030535483

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.8098212888258676

> <JCHEM_PKA_STRONGEST_BASIC>
5.6769321561902775

> <JCHEM_POLAR_SURFACE_AREA>
167.93

> <JCHEM_REFRACTIVITY>
170.39850000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.29e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-(2-{[(2Z)-3-(2-carboxyethyl)-5-{[(2Z)-3-ethenyl-5-hydroxy-4-methylpyrrol-2-ylidene]methyl}-4-methylpyrrol-2-ylidene]methyl}-5-{[(2Z)-4-ethenyl-5-hydroxy-3-methylpyrrol-2-ylidene]methyl}-4-methyl-1H-pyrrol-3-yl)propanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-MAY-14   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-MAY-14         0                                  
HETATM    1  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   34  N   UNK     0       0.000   0.000   0.000  0.00  0.00           N+0
HETATM   35  N   UNK     0       0.000   0.000   0.000  0.00  0.00           N+0
HETATM   36  N   UNK     0       0.000   0.000   0.000  0.00  0.00           N+0
HETATM   37  N   UNK     0       0.000   0.000   0.000  0.00  0.00           N+0
HETATM   38  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   39  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   40  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   41  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   42  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   43  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   44  H   UNK     0       0.000   0.000   0.000  0.00  0.00           H+0
HETATM   45  H   UNK     0       0.000   0.000   0.000  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.000   0.000   0.000  0.00  0.00           H+0
CONECT    1    7                                                            
CONECT    2    8                                                            
CONECT    3   16                                                            
CONECT    4   17                                                            
CONECT    5   18                                                            
CONECT    6   19                                                            
CONECT    7    1   20                                                       
CONECT    8    2   21                                                       
CONECT    9   11   22                                                       
CONECT   10   12   23                                                       
CONECT   11    9   30                                                       
CONECT   12   10   31                                                       
CONECT   13   24   26   44                                                  
CONECT   14   25   27   45                                                  
CONECT   15   28   29   46                                                  
CONECT   16    3   21   26                                                  
CONECT   17    4   22   24                                                  
CONECT   18    5   23   25                                                  
CONECT   19    6   20   32                                                  
CONECT   20    7   19   27                                                  
CONECT   21    8   16   33                                                  
CONECT   22    9   17   28                                                  
CONECT   23   10   18   29                                                  
CONECT   24   13   17   34                                                  
CONECT   25   14   18   35                                                  
CONECT   26   13   16   36                                                  
CONECT   27   14   20   37                                                  
CONECT   28   15   22   34                                                  
CONECT   29   15   23   35                                                  
CONECT   30   11   38   39                                                  
CONECT   31   12   40   41                                                  
CONECT   32   19   37   42                                                  
CONECT   33   21   36   43                                                  
CONECT   34   24   28                                                       
CONECT   35   25   29                                                       
CONECT   36   26   33                                                       
CONECT   37   27   32                                                       
CONECT   38   30                                                            
CONECT   39   30                                                            
CONECT   40   31                                                            
CONECT   41   31                                                            
CONECT   42   32                                                            
CONECT   43   33                                                            
CONECT   44   13                                                            
CONECT   45   14                                                            
CONECT   46   15                                                            
MASTER        0    0    0    0    0    0    0    0   46    0   98    0
END

Synonyms

Value	Source
3-(2-{[(2Z)-3-(2-carboxyethyl)-5-{[(2Z)-3-ethenyl-5-hydroxy-4-methyl-2H-pyrrol-2-ylidene]methyl}-4-methyl-2H-pyrrol-2-ylidene]methyl}-5-{[(2Z)-4-ethenyl-5-hydroxy-3-methyl-2H-pyrrol-2-ylidene]methyl}-4-methyl-1H-pyrrol-3-yl)propanoate	Generator

Molecular Formula

C₃₃H₃₄N₄O₆

Average Mass

582.6463

Monoisotopic Mass

582.24783484

IUPAC Name

3-(2-{[(2Z)-3-(2-carboxyethyl)-5-{[(2Z)-3-ethenyl-5-hydroxy-4-methyl-2H-pyrrol-2-ylidene]methyl}-4-methyl-2H-pyrrol-2-ylidene]methyl}-5-{[(2Z)-4-ethenyl-5-hydroxy-3-methyl-2H-pyrrol-2-ylidene]methyl}-4-methyl-1H-pyrrol-3-yl)propanoic acid

Traditional Name

3-(2-{[(2Z)-3-(2-carboxyethyl)-5-{[(2Z)-3-ethenyl-5-hydroxy-4-methylpyrrol-2-ylidene]methyl}-4-methylpyrrol-2-ylidene]methyl}-5-{[(2Z)-4-ethenyl-5-hydroxy-3-methylpyrrol-2-ylidene]methyl}-4-methyl-1H-pyrrol-3-yl)propanoic acid

CAS Registry Number

114-25-0

SMILES

[H]\C(C1=C(C)C(CCC(O)=O)=C(N1)C(\[H])=C1/N=C(/C(/[H])=C2\N=C(O)C(C)=C2C=C)C(C)=C1CCC(O)=O)=C1\N=C(O)C(C=C)=C1C

InChI Identifier

InChI=1S/C33H34N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,13-15,34H,1-2,9-12H2,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b26-13-,27-14-,29-15-

InChI Key

GWZYPXHJIZCRAJ-SRVCBVSDSA-N

Chemical Taxonomy

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.013 g/L	ALOGPS
logP	3.21	ALOGPS
logP	1.74	ChemAxon
logS	-4.6	ALOGPS
pKa (Strongest Acidic)	3.81	ChemAxon
pKa (Strongest Basic)	5.68	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	167.93 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	170.4 m³·mol⁻¹	ChemAxon
Polarizability	65.67 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_4_1) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-10	View Spectrum
MS	Mass Spectrum (Electron Ionization)	Not Available	2022-08-06	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-23	164.6
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (void)	2025-10-23	47.3
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-23	633.1
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	705.6
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	569.1
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (void)	2025-10-23	180.8
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	3102.5
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (void)	2025-10-23	93.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	408.3
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	492.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	158.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	166.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	205.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (void)	2025-10-23	8.5
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	214.8
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	135.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	457.5
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	1826.3
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	1341.1

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	Alpha Biliverdin_TMS_1	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O)[NH]2)N=C1O	standard non polar	2025-10-24	2619.3
Gas Chromatography	Alpha Biliverdin_TMS_2	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)[NH]2)N=C1O	standard non polar	2025-10-24	1749.19
Gas Chromatography	Alpha Biliverdin_TMS_3	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O	standard non polar	2025-10-24	3454.07
Gas Chromatography	Alpha Biliverdin_TMS_4	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O)[NH]2)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	3125.68
Gas Chromatography	Alpha Biliverdin_TMS_5	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O	standard non polar	2025-10-24	2207.87
Gas Chromatography	Alpha Biliverdin_TMS_6	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)[NH]2)N=C1O	standard non polar	2025-10-24	3083.94
Gas Chromatography	Alpha Biliverdin_TMS_7	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O	standard non polar	2025-10-24	2148.89
Gas Chromatography	Alpha Biliverdin_TMS_8	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O)[NH]2)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	3497.6
Gas Chromatography	Alpha Biliverdin_TMS_9	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O	standard non polar	2025-10-24	2568.26
Gas Chromatography	Alpha Biliverdin_TMS_10	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O	standard non polar	2025-10-24	2833.86
Gas Chromatography	Alpha Biliverdin_TMS_11	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)[NH]2)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	720.258
Gas Chromatography	Alpha Biliverdin_TMS_12	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O	standard non polar	2025-10-24	3092.96
Gas Chromatography	Alpha Biliverdin_TMS_13	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	1414.66
Gas Chromatography	Alpha Biliverdin_TMS_14	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)N2[Si](C)(C)C)N=C1O	standard non polar	2025-10-24	1770.08
Gas Chromatography	Alpha Biliverdin_TMS_15	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	1514.32
Gas Chromatography	Alpha Biliverdin_TMS_16	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O	standard non polar	2025-10-24	811.013
Gas Chromatography	Alpha Biliverdin_TMS_17	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)[NH]2)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	2653.51
Gas Chromatography	Alpha Biliverdin_TMS_18	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O	standard non polar	2025-10-24	3083.4
Gas Chromatography	Alpha Biliverdin_TMS_19	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	1298.11
Gas Chromatography	Alpha Biliverdin_TMS_20	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)N2[Si](C)(C)C)N=C1O	standard non polar	2025-10-24	1510.74
Gas Chromatography	Alpha Biliverdin_TMS_21	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	1800.81
Gas Chromatography	Alpha Biliverdin_TMS_22	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	2378.54
Gas Chromatography	Alpha Biliverdin_TMS_23	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)N2[Si](C)(C)C)N=C1O	standard non polar	2025-10-24	1912.78
Gas Chromatography	Alpha Biliverdin_TMS_24	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	2625.97
Gas Chromatography	Alpha Biliverdin_TMS_25	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)N2[Si](C)(C)C)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	1060.74
Gas Chromatography	Alpha Biliverdin_TMS_26	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	4166.64
Gas Chromatography	Alpha Biliverdin_TMS_27	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)N2[Si](C)(C)C)N=C1O	standard non polar	2025-10-24	2239.33
Gas Chromatography	Alpha Biliverdin_TMS_28	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	2608.37
Gas Chromatography	Alpha Biliverdin_TMS_29	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)N2[Si](C)(C)C)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	2692.73
Gas Chromatography	Alpha Biliverdin_TMS_30	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)N2[Si](C)(C)C)N=C1O[Si](C)(C)C	standard non polar	2025-10-24	2769.98
Gas Chromatography	Alpha Biliverdin_TMS_1	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O)[NH]2)N=C1O	standard polar	2025-10-24	2175.63
Gas Chromatography	Alpha Biliverdin_TMS_2	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)[NH]2)N=C1O	standard polar	2025-10-24	1745.07
Gas Chromatography	Alpha Biliverdin_TMS_3	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O	standard polar	2025-10-24	2963.94
Gas Chromatography	Alpha Biliverdin_TMS_4	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O)[NH]2)N=C1O[Si](C)(C)C	standard polar	2025-10-24	3138.84
Gas Chromatography	Alpha Biliverdin_TMS_5	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O	standard polar	2025-10-24	1714.7
Gas Chromatography	Alpha Biliverdin_TMS_6	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)[NH]2)N=C1O	standard polar	2025-10-24	3100.62
Gas Chromatography	Alpha Biliverdin_TMS_7	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O	standard polar	2025-10-24	1724.41
Gas Chromatography	Alpha Biliverdin_TMS_8	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O)[NH]2)N=C1O[Si](C)(C)C	standard polar	2025-10-24	1928.35
Gas Chromatography	Alpha Biliverdin_TMS_9	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O	standard polar	2025-10-24	3236.6
Gas Chromatography	Alpha Biliverdin_TMS_10	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O	standard polar	2025-10-24	3027.33
Gas Chromatography	Alpha Biliverdin_TMS_11	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)[NH]2)N=C1O[Si](C)(C)C	standard polar	2025-10-24	1325.43
Gas Chromatography	Alpha Biliverdin_TMS_12	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O	standard polar	2025-10-24	2188.23
Gas Chromatography	Alpha Biliverdin_TMS_13	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O[Si](C)(C)C	standard polar	2025-10-24	2563.98
Gas Chromatography	Alpha Biliverdin_TMS_14	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)N2[Si](C)(C)C)N=C1O	standard polar	2025-10-24	2147.67
Gas Chromatography	Alpha Biliverdin_TMS_15	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O[Si](C)(C)C	standard polar	2025-10-24	2562.59
Gas Chromatography	Alpha Biliverdin_TMS_16	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O	standard polar	2025-10-24	1434.75
Gas Chromatography	Alpha Biliverdin_TMS_17	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)[NH]2)N=C1O[Si](C)(C)C	standard polar	2025-10-24	2035.09
Gas Chromatography	Alpha Biliverdin_TMS_18	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O	standard polar	2025-10-24	3319.78
Gas Chromatography	Alpha Biliverdin_TMS_19	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O[Si](C)(C)C	standard polar	2025-10-24	1557.55
Gas Chromatography	Alpha Biliverdin_TMS_20	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)N2[Si](C)(C)C)N=C1O	standard polar	2025-10-24	-439.041
Gas Chromatography	Alpha Biliverdin_TMS_21	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O[Si](C)(C)C	standard polar	2025-10-24	486.247
Gas Chromatography	Alpha Biliverdin_TMS_22	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O[Si](C)(C)C	standard polar	2025-10-24	1721.31
Gas Chromatography	Alpha Biliverdin_TMS_23	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)N2[Si](C)(C)C)N=C1O	standard polar	2025-10-24	1252.97
Gas Chromatography	Alpha Biliverdin_TMS_24	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O[Si](C)(C)C	standard polar	2025-10-24	1640.59
Gas Chromatography	Alpha Biliverdin_TMS_25	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)N2[Si](C)(C)C)N=C1O[Si](C)(C)C	standard polar	2025-10-24	1115.95
Gas Chromatography	Alpha Biliverdin_TMS_26	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)[NH]2)N=C1O[Si](C)(C)C	standard polar	2025-10-24	1371.85
Gas Chromatography	Alpha Biliverdin_TMS_27	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)N2[Si](C)(C)C)N=C1O	standard polar	2025-10-24	3493.75
Gas Chromatography	Alpha Biliverdin_TMS_28	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O)N2[Si](C)(C)C)N=C1O[Si](C)(C)C	standard polar	2025-10-24	1878.98
Gas Chromatography	Alpha Biliverdin_TMS_29	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O[Si](C)(C)C)=C(/C=C3\N=C(/C=C4\N=C(O)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)N2[Si](C)(C)C)N=C1O[Si](C)(C)C	standard polar	2025-10-24	2416.89
Gas Chromatography	Alpha Biliverdin_TMS_30	C=CC1=C(C)/C(=C/C2=C(C)C(CCC(=O)O)=C(/C=C3\N=C(/C=C4\N=C(O[Si](C)(C)C)C(C)=C4C=C)C(C)=C3CCC(=O)O[Si](C)(C)C)N2[Si](C)(C)C)N=C1O[Si](C)(C)C	standard polar	2025-10-24	686.336

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Proteobacteria	1	Human ; Human sputum; Human subgingival plaque; Human feces	Unknown

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Huang W, Brewer LK, Jones JW, Nguyen AT, Marcu A, Wishart DS, Oglesby-Sherrouse AG, Kane MA, Wilks A: PAMDB: a comprehensive Pseudomonas aeruginosa metabolome database. Nucleic Acids Res. 2018 Jan 4;46(D1):D575-D580. doi: 10.1093/nar/gkx1061. [PubMed:29106626 ]

Showing metabocard for Alpha Biliverdin (MMDBc0032867)

MOL for #<Metabolite:0x00007f9ab81ccd48>

3D MOL for #<Metabolite:0x00007f9ab81ccd48>

3D SDF for #<Metabolite:0x00007f9ab81ccd48>

3D-SDF for #<Metabolite:0x00007f9ab81ccd48>

PDB for #<Metabolite:0x00007f9ab81ccd48>

3D PDB for #<Metabolite:0x00007f9ab81ccd48>

SMILES for #<Metabolite:0x00007f9ab81ccd48>

INCHI for #<Metabolite:0x00007f9ab81ccd48>

Structure for #<Metabolite:0x00007f9ab81ccd48>

3D Structure for #<Metabolite:0x00007f9ab81ccd48>