Showing metabocard for Prephytoene diphosphate (MMDBc0049886)

Record Information
Version2.0
StatusDetected and Quantified
Creation Date2022-04-29 22:45:33 UTC
Update Date2024-04-30 20:39:55 UTC
Metabolite IDMMDBc0049886
Metabolite Identification
Common NamePrephytoene diphosphate
DescriptionPhytoene is a precursor to carotenoids. Prephytoene comes from geranyl geranyl diphosphate (GGPP). Carotenoids are essential for life. Prephytoene diphosphate is involved in the following two reactions: 1) Prephytoene diphosphate + H+ + NADPH <=> Pyrophosphate + cis-Phytoene + NADP+ and 2) Geranylgeranyl diphosphate <=> Pyrophosphate + Prephytoene diphosphate + H+.
Structure
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for #<Metabolite:0x00007f9af13f3188>


  Mrv1652309042000282D          

 49 49  0  0  0  0            999 V2000
 9983.6817 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9984.3950 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9982.9663 9980.2115    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
 9985.1104 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9983.5497 9980.7951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9982.1354 9980.2115    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
 9982.5518 9980.9242    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
 9985.8257 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9981.4209 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9982.5518 9981.7492    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9986.5411 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9985.8257 9981.0367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9980.7063 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9987.2565 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9979.9916 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9980.7063 9981.0367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9987.9719 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9979.2770 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9988.6852 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9978.5625 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9989.4006 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9988.6852 9981.0367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9977.8479 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9990.1139 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9977.1331 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9977.8479 9981.0367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9990.8293 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9976.4186 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9991.5447 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9975.7040 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9992.2580 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9991.5447 9981.0367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9974.9895 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9974.2728 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9974.9895 9981.0367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9973.5581 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9972.8435 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9972.1290 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9971.4144 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9972.1290 9981.0367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9983.2652 9982.1630    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9983.2658 9982.9894    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
 9984.0908 9982.9896    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9983.6785 9983.7037    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9982.5508 9983.4003    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9982.5515 9984.2267    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
 9981.8365 9984.6375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9983.3764 9984.2269    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9982.9642 9984.9411    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  3  1  0  0  0  0
  2  4  1  0  0  0  0
  3  5  1  1  0  0  0
  4  8  2  0  0  0  0
  6  9  1  6  0  0  0
  7 10  1  1  0  0  0
  8 11  1  0  0  0  0
  8 12  1  0  0  0  0
  9 13  2  0  0  0  0
 11 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  1  0  0  0  0
 14 17  1  0  0  0  0
 15 18  1  0  0  0  0
 17 19  2  0  0  0  0
 18 20  1  0  0  0  0
 19 21  1  0  0  0  0
 19 22  1  0  0  0  0
 20 23  2  0  0  0  0
 21 24  1  0  0  0  0
 23 25  1  0  0  0  0
 23 26  1  0  0  0  0
 24 27  1  0  0  0  0
 25 28  1  0  0  0  0
 27 29  2  3  0  0  0
 28 30  1  0  0  0  0
 29 31  1  0  0  0  0
 29 32  1  0  0  0  0
 30 33  2  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 34 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  2  3  0  0  0
 38 39  1  0  0  0  0
 38 40  1  0  0  0  0
  6  3  1  0  0  0  0
  6  7  1  0  0  0  0
  7  3  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  2  0  0  0  0
 42 44  1  0  0  0  0
 10 41  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 46 48  2  0  0  0  0
 46 49  1  0  0  0  0
 42 45  1  0  0  0  0
M  END
Download

3D MOL for #<Metabolite:0x00007f9af13f3188>

HMDB0003023
     RDKit          3D
Prephytoene diphosphate
117117  0  0  0  0  0  0  0  0999 V2000
   13.7035    2.9371   -2.3600 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5317    2.2300   -2.9515 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7463    1.4228   -4.1899 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3240    2.3413   -2.3900 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0792    3.1481   -1.1870 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6403    2.4395    0.0314 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3848    1.6654   -0.0474 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2968    0.4868   -0.9167 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3787    2.0432    0.7119 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0679    1.3303    0.7086 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7552    0.8431    2.0720 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4385    0.0991    2.1233 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0904   -0.4136    3.4717 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7245   -0.0497    1.0421 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4511   -0.7219    0.8749 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7263   -1.3043    2.0123 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4579   -2.0172    1.5315 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6366   -3.1630    0.5836 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3016   -1.6153    1.9941 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9794   -2.2375    1.5897 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2679   -2.2898    0.1211 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8838   -3.4902   -0.5084 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1759   -4.6539   -0.3901 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8993   -5.9675   -1.1210 P   0  0  0  0  0  5  0  0  0  0  0  0
   -1.8664   -5.8715   -2.6365 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5017   -6.2039   -0.6216 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9949   -7.3621   -0.7111 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4470   -7.2730   -1.6266 P   0  0  0  0  0  5  0  0  0  0  0  0
    0.2614   -7.7706   -3.0218 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0300   -5.6822   -1.6835 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6113   -8.1798   -0.7850 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0939   -1.4047    0.9968 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.4500   -1.8999    1.4637 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9193    0.0589    0.8456 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0174    0.8591    0.2423 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2948    0.9528    0.9223 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8257    2.1616    1.2959 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0138    3.3544    0.9573 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0931    2.1825    2.0035 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2352    2.8877    1.3276 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5157    2.2544    0.0286 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6601    1.5956   -0.1400 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6222    1.5079    0.9647 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9055    0.9660   -1.4648 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1388    1.4579   -2.1521 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3799    1.2070   -1.4104 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1542    2.2031   -1.0323 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.3968    1.9234   -0.2862 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7826    3.5985   -1.3578 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5755    4.0314   -2.3142 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.6238    2.6501   -2.8986 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.8132    2.5925   -1.3000 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8210    1.4948   -4.8217 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.5653    1.8525   -4.8086 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0185    0.3814   -3.9477 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5230    1.8077   -2.8923 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.0840    3.6231   -0.9293 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4519    4.0540   -1.4169 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4405    1.6749    0.2915 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5867    3.1214    0.9150 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7297    0.6648   -1.8437 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3395    0.1902   -1.2312 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8009   -0.3841   -0.4208 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4919    2.8947    1.3605 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1094    0.5871   -0.0923 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2431    2.0513    0.4211 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6361    1.7354    2.7316 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5452    0.2160    2.5275 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1114   -0.1548    3.8524 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2883   -1.4873    3.6183 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7992    0.0650    4.2418 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1491    0.4082    0.0835 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7153    0.0244    0.3949 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5632   -1.4586    0.0166 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3006   -2.0039    2.6352 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3117   -0.5019    2.6883 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3578   -2.9478   -0.4474 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6945   -3.5465    0.6387 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0257   -3.9837    0.9713 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2102   -0.7917    2.7108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2344   -3.1172    2.2260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6039   -1.7268   -0.6013 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0986   -3.2881   -1.5981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8950   -3.6689   -0.0755 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9743   -5.3568   -0.4442 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4527   -5.0971   -2.2458 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5412   -7.9928    0.1896 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2129   -1.9449    0.6967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8163   -1.4104    2.3770 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3398   -2.9976    1.7904 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9678    0.2011    0.2377 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6024    0.5340    1.8391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2442    0.3991   -0.7802 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6420    1.8803   -0.0359 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9351    0.1287    1.1675 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9920    3.3042    1.3879 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5402    4.2511    1.3334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9855    3.4772   -0.1618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9113    2.7301    2.9797 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4048    1.1702    2.3294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0930    2.9006    2.0244 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9484    3.9676    1.2192 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7652    2.3542   -0.7492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1594    1.1990    1.9297 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2183    2.4051    1.1422 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3437    0.6776    0.7395 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0464    1.1900   -2.1670 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9225   -0.1365   -1.2886 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0025    2.5521   -2.3631 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2075    0.8854   -3.1156 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6235    0.1604   -1.1955 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.2917    1.8714   -0.9402 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.2621    0.9768    0.3069 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5872    2.7367    0.4697 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8248    3.8211   -0.8560 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6794    3.7779   -2.4509 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5607    4.3035   -0.9763 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
 24 26  1  0
 24 27  1  0
 27 28  1  0
 28 29  2  0
 28 30  1  0
 28 31  1  0
 21 32  1  0
 32 33  1  1
 32 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  2  0
 37 38  1  0
 37 39  1  0
 39 40  1  0
 40 41  1  0
 41 42  2  0
 42 43  1  0
 42 44  1  0
 44 45  1  0
 45 46  1  0
 46 47  2  3
 47 48  1  0
 47 49  1  0
 32 20  1  0
  1 50  1  0
  1 51  1  0
  1 52  1  0
  3 53  1  0
  3 54  1  0
  3 55  1  0
  4 56  1  0
  5 57  1  0
  5 58  1  0
  6 59  1  0
  6 60  1  0
  8 61  1  0
  8 62  1  0
  8 63  1  0
  9 64  1  0
 10 65  1  0
 10 66  1  0
 11 67  1  0
 11 68  1  0
 13 69  1  0
 13 70  1  0
 13 71  1  0
 14 72  1  0
 15 73  1  0
 15 74  1  0
 16 75  1  0
 16 76  1  0
 18 77  1  0
 18 78  1  0
 18 79  1  0
 19 80  1  0
 20 81  1  1
 21 82  1  6
 22 83  1  0
 22 84  1  0
 26 85  1  0
 30 86  1  0
 31 87  1  0
 33 88  1  0
 33 89  1  0
 33 90  1  0
 34 91  1  0
 34 92  1  0
 35 93  1  0
 35 94  1  0
 36 95  1  0
 38 96  1  0
 38 97  1  0
 38 98  1  0
 39 99  1  0
 39100  1  0
 40101  1  0
 40102  1  0
 41103  1  0
 43104  1  0
 43105  1  0
 43106  1  0
 44107  1  0
 44108  1  0
 45109  1  0
 45110  1  0
 46111  1  0
 48112  1  0
 48113  1  0
 48114  1  0
 49115  1  0
 49116  1  0
 49117  1  0
M  END
Download

3D SDF for #<Metabolite:0x00007f9af13f3188>


  Mrv1652309042000282D          

 49 49  0  0  0  0            999 V2000
 9983.6817 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9984.3950 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9982.9663 9980.2115    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
 9985.1104 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9983.5497 9980.7951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9982.1354 9980.2115    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
 9982.5518 9980.9242    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
 9985.8257 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9981.4209 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9982.5518 9981.7492    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9986.5411 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9985.8257 9981.0367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9980.7063 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9987.2565 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9979.9916 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9980.7063 9981.0367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9987.9719 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9979.2770 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9988.6852 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9978.5625 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9989.4006 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9988.6852 9981.0367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9977.8479 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9990.1139 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9977.1331 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9977.8479 9981.0367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9990.8293 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9976.4186 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9991.5447 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9975.7040 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9992.2580 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9991.5447 9981.0367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9974.9895 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9974.2728 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9974.9895 9981.0367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9973.5581 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9972.8435 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9972.1290 9980.2115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9971.4144 9979.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9972.1290 9981.0367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9983.2652 9982.1630    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9983.2658 9982.9894    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
 9984.0908 9982.9896    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9983.6785 9983.7037    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9982.5508 9983.4003    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9982.5515 9984.2267    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
 9981.8365 9984.6375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9983.3764 9984.2269    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9982.9642 9984.9411    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  3  1  0  0  0  0
  2  4  1  0  0  0  0
  3  5  1  1  0  0  0
  4  8  2  0  0  0  0
  6  9  1  6  0  0  0
  7 10  1  1  0  0  0
  8 11  1  0  0  0  0
  8 12  1  0  0  0  0
  9 13  2  0  0  0  0
 11 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  1  0  0  0  0
 14 17  1  0  0  0  0
 15 18  1  0  0  0  0
 17 19  2  0  0  0  0
 18 20  1  0  0  0  0
 19 21  1  0  0  0  0
 19 22  1  0  0  0  0
 20 23  2  0  0  0  0
 21 24  1  0  0  0  0
 23 25  1  0  0  0  0
 23 26  1  0  0  0  0
 24 27  1  0  0  0  0
 25 28  1  0  0  0  0
 27 29  2  3  0  0  0
 28 30  1  0  0  0  0
 29 31  1  0  0  0  0
 29 32  1  0  0  0  0
 30 33  2  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 34 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  2  3  0  0  0
 38 39  1  0  0  0  0
 38 40  1  0  0  0  0
  6  3  1  0  0  0  0
  6  7  1  0  0  0  0
  7  3  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  2  0  0  0  0
 42 44  1  0  0  0  0
 10 41  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 46 48  2  0  0  0  0
 46 49  1  0  0  0  0
 42 45  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0049886

> <DATABASE_NAME>
MIME

> <SMILES>
CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\[C@@H]1[C@@H](COP(O)(=O)OP(O)(O)=O)[C@]1(C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C40H68O7P2/c1-31(2)17-11-19-33(5)21-13-23-35(7)25-15-26-37(9)29-38-39(30-46-49(44,45)47-48(41,42)43)40(38,10)28-16-27-36(8)24-14-22-34(6)20-12-18-32(3)4/h17-18,21-22,25,27,29,38-39H,11-16,19-20,23-24,26,28,30H2,1-10H3,(H,44,45)(H2,41,42,43)/b33-21+,34-22+,35-25+,36-27+,37-29+/t38-,39-,40-/m1/s1

> <INCHI_KEY>
RVCNKTPCHZNAAO-UZDKSQMHSA-N

> <FORMULA>
C40H68O7P2

> <MOLECULAR_WEIGHT>
722.9112

> <EXACT_MASS>
722.444027554

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
117

> <JCHEM_AVERAGE_POLARIZABILITY>
84.56603796258487

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[hydroxy({[(1R,2R,3R)-2-methyl-3-[(1E,5E,9E)-2,6,10,14-tetramethylpentadeca-1,5,9,13-tetraen-1-yl]-2-[(3E,7E)-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]cyclopropyl]methoxy})phosphoryl]oxy}phosphonic acid

> <ALOGPS_LOGP>
7.02

> <JCHEM_LOGP>
11.319583602

> <ALOGPS_LOGS>
-6.16

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
3.2199490762788217

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.778452826766597

> <JCHEM_POLAR_SURFACE_AREA>
113.29

> <JCHEM_REFRACTIVITY>
212.9376000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
24

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.02e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
prephytoene diphosphate

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for #<Metabolite:0x00007f9af13f3188>

HMDB0003023
     RDKit          3D
Prephytoene diphosphate
117117  0  0  0  0  0  0  0  0999 V2000
   13.7035    2.9371   -2.3600 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5317    2.2300   -2.9515 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7463    1.4228   -4.1899 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3240    2.3413   -2.3900 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0792    3.1481   -1.1870 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6403    2.4395    0.0314 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3848    1.6654   -0.0474 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2968    0.4868   -0.9167 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3787    2.0432    0.7119 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0679    1.3303    0.7086 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7552    0.8431    2.0720 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4385    0.0991    2.1233 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0904   -0.4136    3.4717 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7245   -0.0497    1.0421 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4511   -0.7219    0.8749 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7263   -1.3043    2.0123 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4579   -2.0172    1.5315 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6366   -3.1630    0.5836 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3016   -1.6153    1.9941 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9794   -2.2375    1.5897 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2679   -2.2898    0.1211 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8838   -3.4902   -0.5084 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1759   -4.6539   -0.3901 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8993   -5.9675   -1.1210 P   0  0  0  0  0  5  0  0  0  0  0  0
   -1.8664   -5.8715   -2.6365 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5017   -6.2039   -0.6216 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9949   -7.3621   -0.7111 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4470   -7.2730   -1.6266 P   0  0  0  0  0  5  0  0  0  0  0  0
    0.2614   -7.7706   -3.0218 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0300   -5.6822   -1.6835 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6113   -8.1798   -0.7850 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0939   -1.4047    0.9968 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.4500   -1.8999    1.4637 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9193    0.0589    0.8456 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0174    0.8591    0.2423 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2948    0.9528    0.9223 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8257    2.1616    1.2959 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0138    3.3544    0.9573 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0931    2.1825    2.0035 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2352    2.8877    1.3276 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5157    2.2544    0.0286 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6601    1.5956   -0.1400 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6222    1.5079    0.9647 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9055    0.9660   -1.4648 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1388    1.4579   -2.1521 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3799    1.2070   -1.4104 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1542    2.2031   -1.0323 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.3968    1.9234   -0.2862 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7826    3.5985   -1.3578 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5755    4.0314   -2.3142 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.6238    2.6501   -2.8986 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.8132    2.5925   -1.3000 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8210    1.4948   -4.8217 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.5653    1.8525   -4.8086 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0185    0.3814   -3.9477 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5230    1.8077   -2.8923 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.0840    3.6231   -0.9293 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4519    4.0540   -1.4169 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4405    1.6749    0.2915 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5867    3.1214    0.9150 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7297    0.6648   -1.8437 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3395    0.1902   -1.2312 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8009   -0.3841   -0.4208 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4919    2.8947    1.3605 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1094    0.5871   -0.0923 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2431    2.0513    0.4211 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6361    1.7354    2.7316 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5452    0.2160    2.5275 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1114   -0.1548    3.8524 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2883   -1.4873    3.6183 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7992    0.0650    4.2418 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1491    0.4082    0.0835 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7153    0.0244    0.3949 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5632   -1.4586    0.0166 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3006   -2.0039    2.6352 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3117   -0.5019    2.6883 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3578   -2.9478   -0.4474 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6945   -3.5465    0.6387 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0257   -3.9837    0.9713 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2102   -0.7917    2.7108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2344   -3.1172    2.2260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6039   -1.7268   -0.6013 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0986   -3.2881   -1.5981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8950   -3.6689   -0.0755 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9743   -5.3568   -0.4442 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4527   -5.0971   -2.2458 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5412   -7.9928    0.1896 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2129   -1.9449    0.6967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8163   -1.4104    2.3770 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3398   -2.9976    1.7904 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9678    0.2011    0.2377 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6024    0.5340    1.8391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2442    0.3991   -0.7802 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6420    1.8803   -0.0359 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9351    0.1287    1.1675 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9920    3.3042    1.3879 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5402    4.2511    1.3334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9855    3.4772   -0.1618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9113    2.7301    2.9797 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4048    1.1702    2.3294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0930    2.9006    2.0244 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9484    3.9676    1.2192 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7652    2.3542   -0.7492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1594    1.1990    1.9297 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2183    2.4051    1.1422 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3437    0.6776    0.7395 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0464    1.1900   -2.1670 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9225   -0.1365   -1.2886 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0025    2.5521   -2.3631 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2075    0.8854   -3.1156 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6235    0.1604   -1.1955 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.2917    1.8714   -0.9402 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.2621    0.9768    0.3069 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5872    2.7367    0.4697 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8248    3.8211   -0.8560 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6794    3.7779   -2.4509 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5607    4.3035   -0.9763 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
 24 26  1  0
 24 27  1  0
 27 28  1  0
 28 29  2  0
 28 30  1  0
 28 31  1  0
 21 32  1  0
 32 33  1  1
 32 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  2  0
 37 38  1  0
 37 39  1  0
 39 40  1  0
 40 41  1  0
 41 42  2  0
 42 43  1  0
 42 44  1  0
 44 45  1  0
 45 46  1  0
 46 47  2  3
 47 48  1  0
 47 49  1  0
 32 20  1  0
  1 50  1  0
  1 51  1  0
  1 52  1  0
  3 53  1  0
  3 54  1  0
  3 55  1  0
  4 56  1  0
  5 57  1  0
  5 58  1  0
  6 59  1  0
  6 60  1  0
  8 61  1  0
  8 62  1  0
  8 63  1  0
  9 64  1  0
 10 65  1  0
 10 66  1  0
 11 67  1  0
 11 68  1  0
 13 69  1  0
 13 70  1  0
 13 71  1  0
 14 72  1  0
 15 73  1  0
 15 74  1  0
 16 75  1  0
 16 76  1  0
 18 77  1  0
 18 78  1  0
 18 79  1  0
 19 80  1  0
 20 81  1  1
 21 82  1  6
 22 83  1  0
 22 84  1  0
 26 85  1  0
 30 86  1  0
 31 87  1  0
 33 88  1  0
 33 89  1  0
 33 90  1  0
 34 91  1  0
 34 92  1  0
 35 93  1  0
 35 94  1  0
 36 95  1  0
 38 96  1  0
 38 97  1  0
 38 98  1  0
 39 99  1  0
 39100  1  0
 40101  1  0
 40102  1  0
 41103  1  0
 43104  1  0
 43105  1  0
 43106  1  0
 44107  1  0
 44108  1  0
 45109  1  0
 45110  1  0
 46111  1  0
 48112  1  0
 48113  1  0
 48114  1  0
 49115  1  0
 49116  1  0
 49117  1  0
M  END
Download

PDB for #<Metabolite:0x00007f9af13f3188>

HEADER    PROTEIN                                 04-SEP-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-20         0                                  
HETATM    1  C   UNK     0    8636.2068628.960   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0    8637.5378629.728   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0    8634.8708629.728   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0    8638.8738628.960   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0    8635.9598630.818   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0    8633.3198629.728   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0    8634.0978631.059   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0    8640.2088629.728   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0    8631.9868628.960   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0    8634.0978632.599   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0    8641.5438628.960   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0    8640.2088631.269   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0    8630.6528629.728   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0    8642.8798629.728   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0    8629.3188628.960   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0    8630.6528631.269   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0    8644.2148628.960   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0    8627.9848629.728   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0    8645.5468629.728   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0    8626.6508628.960   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0    8646.8818628.960   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0    8645.5468631.269   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0    8625.3168629.728   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0    8648.2138629.728   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0    8623.9828628.960   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0    8625.3168631.269   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0    8649.5488628.960   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0    8622.6488629.728   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0    8650.8838629.728   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0    8621.3148628.960   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0    8652.2158628.960   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0    8650.8838631.269   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0    8619.9808629.728   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0    8618.6438628.960   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0    8619.9808631.269   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0    8617.3088629.728   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0    8615.9758628.960   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0    8614.6418629.728   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0    8613.3078628.960   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0    8614.6418631.269   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0    8635.4288633.371   0.000  0.00  0.00           O+0
HETATM   42  P   UNK     0    8635.4298634.914   0.000  0.00  0.00           P+0
HETATM   43  O   UNK     0    8636.9698634.914   0.000  0.00  0.00           O+0
HETATM   44  O   UNK     0    8636.2008636.247   0.000  0.00  0.00           O+0
HETATM   45  O   UNK     0    8634.0958635.681   0.000  0.00  0.00           O+0
HETATM   46  P   UNK     0    8634.0968637.223   0.000  0.00  0.00           P+0
HETATM   47  O   UNK     0    8632.7618637.990   0.000  0.00  0.00           O+0
HETATM   48  O   UNK     0    8635.6368637.224   0.000  0.00  0.00           O+0
HETATM   49  O   UNK     0    8634.8678638.557   0.000  0.00  0.00           O+0
CONECT    1    2    3                                                       
CONECT    2    1    4                                                       
CONECT    3    1    5    6    7                                             
CONECT    4    2    8                                                       
CONECT    5    3                                                            
CONECT    6    9    3    7                                                  
CONECT    7   10    6    3                                                  
CONECT    8    4   11   12                                                  
CONECT    9    6   13                                                       
CONECT   10    7   41                                                       
CONECT   11    8   14                                                       
CONECT   12    8                                                            
CONECT   13    9   15   16                                                  
CONECT   14   11   17                                                       
CONECT   15   13   18                                                       
CONECT   16   13                                                            
CONECT   17   14   19                                                       
CONECT   18   15   20                                                       
CONECT   19   17   21   22                                                  
CONECT   20   18   23                                                       
CONECT   21   19   24                                                       
CONECT   22   19                                                            
CONECT   23   20   25   26                                                  
CONECT   24   21   27                                                       
CONECT   25   23   28                                                       
CONECT   26   23                                                            
CONECT   27   24   29                                                       
CONECT   28   25   30                                                       
CONECT   29   27   31   32                                                  
CONECT   30   28   33                                                       
CONECT   31   29                                                            
CONECT   32   29                                                            
CONECT   33   30   34   35                                                  
CONECT   34   33   36                                                       
CONECT   35   33                                                            
CONECT   36   34   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38                                                            
CONECT   41   42   10                                                       
CONECT   42   41   43   44   45                                             
CONECT   43   42                                                            
CONECT   44   42                                                            
CONECT   45   46   42                                                       
CONECT   46   45   47   48   49                                             
CONECT   47   46                                                            
CONECT   48   46                                                            
CONECT   49   46                                                            
MASTER        0    0    0    0    0    0    0    0   49    0   98    0
END
Download

3D PDB for #<Metabolite:0x00007f9af13f3188>

COMPND    HMDB0003023
HETATM    1  C1  UNL     1      13.703   2.937  -2.360  1.00  0.00           C  
HETATM    2  C2  UNL     1      12.532   2.230  -2.951  1.00  0.00           C  
HETATM    3  C3  UNL     1      12.746   1.423  -4.190  1.00  0.00           C  
HETATM    4  C4  UNL     1      11.324   2.341  -2.390  1.00  0.00           C  
HETATM    5  C5  UNL     1      11.079   3.148  -1.187  1.00  0.00           C  
HETATM    6  C6  UNL     1      10.640   2.439   0.031  1.00  0.00           C  
HETATM    7  C7  UNL     1       9.385   1.665  -0.047  1.00  0.00           C  
HETATM    8  C8  UNL     1       9.297   0.487  -0.917  1.00  0.00           C  
HETATM    9  C9  UNL     1       8.379   2.043   0.712  1.00  0.00           C  
HETATM   10  C10 UNL     1       7.068   1.330   0.709  1.00  0.00           C  
HETATM   11  C11 UNL     1       6.755   0.843   2.072  1.00  0.00           C  
HETATM   12  C12 UNL     1       5.439   0.099   2.123  1.00  0.00           C  
HETATM   13  C13 UNL     1       5.090  -0.414   3.472  1.00  0.00           C  
HETATM   14  C14 UNL     1       4.724  -0.050   1.042  1.00  0.00           C  
HETATM   15  C15 UNL     1       3.451  -0.722   0.875  1.00  0.00           C  
HETATM   16  C16 UNL     1       2.726  -1.304   2.012  1.00  0.00           C  
HETATM   17  C17 UNL     1       1.458  -2.017   1.531  1.00  0.00           C  
HETATM   18  C18 UNL     1       1.637  -3.163   0.584  1.00  0.00           C  
HETATM   19  C19 UNL     1       0.302  -1.615   1.994  1.00  0.00           C  
HETATM   20  C20 UNL     1      -0.979  -2.237   1.590  1.00  0.00           C  
HETATM   21  C21 UNL     1      -1.268  -2.290   0.121  1.00  0.00           C  
HETATM   22  C22 UNL     1      -1.884  -3.490  -0.508  1.00  0.00           C  
HETATM   23  O1  UNL     1      -1.176  -4.654  -0.390  1.00  0.00           O  
HETATM   24  P1  UNL     1      -1.899  -5.968  -1.121  1.00  0.00           P  
HETATM   25  O2  UNL     1      -1.866  -5.871  -2.636  1.00  0.00           O  
HETATM   26  O3  UNL     1      -3.502  -6.204  -0.622  1.00  0.00           O  
HETATM   27  O4  UNL     1      -0.995  -7.362  -0.711  1.00  0.00           O  
HETATM   28  P2  UNL     1       0.447  -7.273  -1.627  1.00  0.00           P  
HETATM   29  O5  UNL     1       0.261  -7.771  -3.022  1.00  0.00           O  
HETATM   30  O6  UNL     1       1.030  -5.682  -1.683  1.00  0.00           O  
HETATM   31  O7  UNL     1       1.611  -8.180  -0.785  1.00  0.00           O  
HETATM   32  C23 UNL     1      -2.094  -1.405   0.997  1.00  0.00           C  
HETATM   33  C24 UNL     1      -3.450  -1.900   1.464  1.00  0.00           C  
HETATM   34  C25 UNL     1      -1.919   0.059   0.846  1.00  0.00           C  
HETATM   35  C26 UNL     1      -3.017   0.859   0.242  1.00  0.00           C  
HETATM   36  C27 UNL     1      -4.295   0.953   0.922  1.00  0.00           C  
HETATM   37  C28 UNL     1      -4.826   2.162   1.296  1.00  0.00           C  
HETATM   38  C29 UNL     1      -4.014   3.354   0.957  1.00  0.00           C  
HETATM   39  C30 UNL     1      -6.093   2.183   2.003  1.00  0.00           C  
HETATM   40  C31 UNL     1      -7.235   2.888   1.328  1.00  0.00           C  
HETATM   41  C32 UNL     1      -7.516   2.254   0.029  1.00  0.00           C  
HETATM   42  C33 UNL     1      -8.660   1.596  -0.140  1.00  0.00           C  
HETATM   43  C34 UNL     1      -9.622   1.508   0.965  1.00  0.00           C  
HETATM   44  C35 UNL     1      -8.905   0.966  -1.465  1.00  0.00           C  
HETATM   45  C36 UNL     1     -10.139   1.458  -2.152  1.00  0.00           C  
HETATM   46  C37 UNL     1     -11.380   1.207  -1.410  1.00  0.00           C  
HETATM   47  C38 UNL     1     -12.154   2.203  -1.032  1.00  0.00           C  
HETATM   48  C39 UNL     1     -13.397   1.923  -0.286  1.00  0.00           C  
HETATM   49  C40 UNL     1     -11.783   3.598  -1.358  1.00  0.00           C  
HETATM   50  H1  UNL     1      13.575   4.031  -2.314  1.00  0.00           H  
HETATM   51  H2  UNL     1      14.624   2.650  -2.899  1.00  0.00           H  
HETATM   52  H3  UNL     1      13.813   2.593  -1.300  1.00  0.00           H  
HETATM   53  H4  UNL     1      11.821   1.495  -4.822  1.00  0.00           H  
HETATM   54  H5  UNL     1      13.565   1.852  -4.809  1.00  0.00           H  
HETATM   55  H6  UNL     1      13.018   0.381  -3.948  1.00  0.00           H  
HETATM   56  H7  UNL     1      10.523   1.808  -2.892  1.00  0.00           H  
HETATM   57  H8  UNL     1      12.084   3.623  -0.929  1.00  0.00           H  
HETATM   58  H9  UNL     1      10.452   4.054  -1.417  1.00  0.00           H  
HETATM   59  H10 UNL     1      11.440   1.675   0.292  1.00  0.00           H  
HETATM   60  H11 UNL     1      10.587   3.121   0.915  1.00  0.00           H  
HETATM   61  H12 UNL     1       8.730   0.665  -1.844  1.00  0.00           H  
HETATM   62  H13 UNL     1      10.339   0.190  -1.231  1.00  0.00           H  
HETATM   63  H14 UNL     1       8.801  -0.384  -0.421  1.00  0.00           H  
HETATM   64  H15 UNL     1       8.492   2.895   1.361  1.00  0.00           H  
HETATM   65  H16 UNL     1       7.109   0.587  -0.092  1.00  0.00           H  
HETATM   66  H17 UNL     1       6.243   2.051   0.421  1.00  0.00           H  
HETATM   67  H18 UNL     1       6.636   1.735   2.732  1.00  0.00           H  
HETATM   68  H19 UNL     1       7.545   0.216   2.528  1.00  0.00           H  
HETATM   69  H20 UNL     1       4.111  -0.155   3.852  1.00  0.00           H  
HETATM   70  H21 UNL     1       5.288  -1.487   3.618  1.00  0.00           H  
HETATM   71  H22 UNL     1       5.799   0.065   4.242  1.00  0.00           H  
HETATM   72  H23 UNL     1       5.149   0.408   0.083  1.00  0.00           H  
HETATM   73  H24 UNL     1       2.715   0.024   0.395  1.00  0.00           H  
HETATM   74  H25 UNL     1       3.563  -1.459   0.017  1.00  0.00           H  
HETATM   75  H26 UNL     1       3.301  -2.004   2.635  1.00  0.00           H  
HETATM   76  H27 UNL     1       2.312  -0.502   2.688  1.00  0.00           H  
HETATM   77  H28 UNL     1       1.358  -2.948  -0.447  1.00  0.00           H  
HETATM   78  H29 UNL     1       2.695  -3.547   0.639  1.00  0.00           H  
HETATM   79  H30 UNL     1       1.026  -3.984   0.971  1.00  0.00           H  
HETATM   80  H31 UNL     1       0.210  -0.792   2.711  1.00  0.00           H  
HETATM   81  H32 UNL     1      -1.234  -3.117   2.226  1.00  0.00           H  
HETATM   82  H33 UNL     1      -0.604  -1.727  -0.601  1.00  0.00           H  
HETATM   83  H34 UNL     1      -2.099  -3.288  -1.598  1.00  0.00           H  
HETATM   84  H35 UNL     1      -2.895  -3.669  -0.076  1.00  0.00           H  
HETATM   85  H36 UNL     1      -3.974  -5.357  -0.444  1.00  0.00           H  
HETATM   86  H37 UNL     1       0.453  -5.097  -2.246  1.00  0.00           H  
HETATM   87  H38 UNL     1       1.541  -7.993   0.190  1.00  0.00           H  
HETATM   88  H39 UNL     1      -4.213  -1.945   0.697  1.00  0.00           H  
HETATM   89  H40 UNL     1      -3.816  -1.410   2.377  1.00  0.00           H  
HETATM   90  H41 UNL     1      -3.340  -2.998   1.790  1.00  0.00           H  
HETATM   91  H42 UNL     1      -0.968   0.201   0.238  1.00  0.00           H  
HETATM   92  H43 UNL     1      -1.602   0.534   1.839  1.00  0.00           H  
HETATM   93  H44 UNL     1      -3.244   0.399  -0.780  1.00  0.00           H  
HETATM   94  H45 UNL     1      -2.642   1.880  -0.036  1.00  0.00           H  
HETATM   95  H46 UNL     1      -4.935   0.129   1.167  1.00  0.00           H  
HETATM   96  H47 UNL     1      -2.992   3.304   1.388  1.00  0.00           H  
HETATM   97  H48 UNL     1      -4.540   4.251   1.333  1.00  0.00           H  
HETATM   98  H49 UNL     1      -3.985   3.477  -0.162  1.00  0.00           H  
HETATM   99  H50 UNL     1      -5.911   2.730   2.980  1.00  0.00           H  
HETATM  100  H51 UNL     1      -6.405   1.170   2.329  1.00  0.00           H  
HETATM  101  H52 UNL     1      -8.093   2.901   2.024  1.00  0.00           H  
HETATM  102  H53 UNL     1      -6.948   3.968   1.219  1.00  0.00           H  
HETATM  103  H54 UNL     1      -6.765   2.354  -0.749  1.00  0.00           H  
HETATM  104  H55 UNL     1      -9.159   1.199   1.930  1.00  0.00           H  
HETATM  105  H56 UNL     1     -10.218   2.405   1.142  1.00  0.00           H  
HETATM  106  H57 UNL     1     -10.344   0.678   0.739  1.00  0.00           H  
HETATM  107  H58 UNL     1      -8.046   1.190  -2.167  1.00  0.00           H  
HETATM  108  H59 UNL     1      -8.922  -0.137  -1.289  1.00  0.00           H  
HETATM  109  H60 UNL     1     -10.003   2.552  -2.363  1.00  0.00           H  
HETATM  110  H61 UNL     1     -10.207   0.885  -3.116  1.00  0.00           H  
HETATM  111  H62 UNL     1     -11.624   0.160  -1.195  1.00  0.00           H  
HETATM  112  H63 UNL     1     -14.292   1.871  -0.940  1.00  0.00           H  
HETATM  113  H64 UNL     1     -13.262   0.977   0.307  1.00  0.00           H  
HETATM  114  H65 UNL     1     -13.587   2.737   0.470  1.00  0.00           H  
HETATM  115  H66 UNL     1     -10.825   3.821  -0.856  1.00  0.00           H  
HETATM  116  H67 UNL     1     -11.679   3.778  -2.451  1.00  0.00           H  
HETATM  117  H68 UNL     1     -12.561   4.304  -0.976  1.00  0.00           H  
CONECT    1    2   50   51   52
CONECT    2    3    4    4
CONECT    3   53   54   55
CONECT    4    5   56
CONECT    5    6   57   58
CONECT    6    7   59   60
CONECT    7    8    9    9
CONECT    8   61   62   63
CONECT    9   10   64
CONECT   10   11   65   66
CONECT   11   12   67   68
CONECT   12   13   14   14
CONECT   13   69   70   71
CONECT   14   15   72
CONECT   15   16   73   74
CONECT   16   17   75   76
CONECT   17   18   19   19
CONECT   18   77   78   79
CONECT   19   20   80
CONECT   20   21   32   81
CONECT   21   22   32   82
CONECT   22   23   83   84
CONECT   23   24
CONECT   24   25   25   26   27
CONECT   26   85
CONECT   27   28
CONECT   28   29   29   30   31
CONECT   30   86
CONECT   31   87
CONECT   32   33   34
CONECT   33   88   89   90
CONECT   34   35   91   92
CONECT   35   36   93   94
CONECT   36   37   37   95
CONECT   37   38   39
CONECT   38   96   97   98
CONECT   39   40   99  100
CONECT   40   41  101  102
CONECT   41   42   42  103
CONECT   42   43   44
CONECT   43  104  105  106
CONECT   44   45  107  108
CONECT   45   46  109  110
CONECT   46   47   47  111
CONECT   47   48   49
CONECT   48  112  113  114
CONECT   49  115  116  117
END
Download

SMILES for #<Metabolite:0x00007f9af13f3188>

CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\[C@@H]1[C@@H](COP(O)(=O)OP(O)(O)=O)[C@]1(C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C
Download

INCHI for #<Metabolite:0x00007f9af13f3188>

InChI=1S/C40H68O7P2/c1-31(2)17-11-19-33(5)21-13-23-35(7)25-15-26-37(9)29-38-39(30-46-49(44,45)47-48(41,42)43)40(38,10)28-16-27-36(8)24-14-22-34(6)20-12-18-32(3)4/h17-18,21-22,25,27,29,38-39H,11-16,19-20,23-24,26,28,30H2,1-10H3,(H,44,45)(H2,41,42,43)/b33-21+,34-22+,35-25+,36-27+,37-29+/t38-,39-,40-/m1/s1
Download
Synonyms
ValueSource
Prephytoene diphosphoric acidGenerator
Prelycopersene pyrophosphateMeSH, HMDB
Prephytoene pyrophosphateMeSH, HMDB
Molecular FormulaC40H68O7P2
Average Mass722.9112
Monoisotopic Mass722.444027554
IUPAC Name{[hydroxy({[(1R,2R,3R)-2-methyl-3-[(1E,5E,9E)-2,6,10,14-tetramethylpentadeca-1,5,9,13-tetraen-1-yl]-2-[(3E,7E)-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]cyclopropyl]methoxy})phosphoryl]oxy}phosphonic acid
Traditional Nameprephytoene diphosphate
CAS Registry NumberNot Available
SMILES
CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\[C@@H]1[C@@H](COP(O)(=O)OP(O)(O)=O)[C@]1(C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C
InChI Identifier
InChI=1S/C40H68O7P2/c1-31(2)17-11-19-33(5)21-13-23-35(7)25-15-26-37(9)29-38-39(30-46-49(44,45)47-48(41,42)43)40(38,10)28-16-27-36(8)24-14-22-34(6)20-12-18-32(3)4/h17-18,21-22,25,27,29,38-39H,11-16,19-20,23-24,26,28,30H2,1-10H3,(H,44,45)(H2,41,42,43)/b33-21+,34-22+,35-25+,36-27+,37-29+/t38-,39-,40-/m1/s1
InChI KeyRVCNKTPCHZNAAO-UZDKSQMHSA-N