| MMDBm0000055 | Bacteroides thetaiotaomicron VPI-5482 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000375 | Haemophilus influenzae | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001273 | Bacillus subtilis subsp. spizizenii str. W23 | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001734 | Lactobacillus plantarum WCFS1 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001741 | Lactobacillus casei ATCC 334 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001784 | Listeria monocytogenes serotype 4b str. F2365 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001785 | Listeria monocytogenes EGD-e | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001786 | Listeria innocua Clip11262 | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0002555 | Staphylococcus aureus subsp. aureus N315 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002556 | Staphylococcus aureus subsp. aureus Mu50 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002557 | Staphylococcus aureus subsp. aureus COL | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002558 | Staphylococcus aureus subsp. aureus MRSA252 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002559 | Staphylococcus aureus subsp. aureus MSSA476 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002560 | Staphylococcus epidermidis RP62A | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002561 | Staphylococcus aureus subsp. aureus MW2 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002562 | Staphylococcus epidermidis ATCC 12228 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002564 | Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002565 | Staphylococcus aureus RF122 | Eubacteria | Firmicutes | Cattle | Not Available | RHEA |
| MMDBm0002567 | Staphylococcus aureus subsp. aureus NCTC 8325 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002585 | Streptococcus pneumoniae TIGR4 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002586 | Streptococcus pneumoniae R6 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002589 | Streptococcus agalactiae 2603V/R | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002591 | Streptococcus agalactiae NEM316 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002597 | Streptococcus agalactiae A909 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002602 | Streptococcus pneumoniae D39 | Eubacteria | Firmicutes | Human | Not Available | RHEA |