MiMeDB: Showing metabocard for 3-chloro-L-alanine (MMDBc0054218)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2022-06-05 22:59:39 UTC

Update Date

2025-10-07 16:04:18 UTC

Metabolite ID

MMDBc0054218

Metabolite Identification

Common Name

3-chloro-L-alanine

Description

3-chloro-L-alanine is a non-proteinogenic amino acid belonging to the class of halogenated amino acids. Its chemical structure features a chlorine atom substituted at the 3-position of the L-alanine backbone, which influences its reactivity and biological interactions. In biochemical pathways, 3-chloro-L-alanine is known to participate in various enzymatic reactions, including its role as a substrate in beta-elimination reactions alongside L-serine O-sulphate (PMID:8797848 ). It has been identified as an inhibitor of kynureninase, highlighting its potential in modulating metabolic pathways (PMID:6440137 ). Additionally, studies have shown that 3-chloro-L-alanine can affect the activity ratios of GlyAT isoforms, suggesting its involvement in amino acid metabolism (PMID:10547044 ). Furthermore, it has been used in affinity labeling studies of alanine aminotransferase, indicating its significance in amino acid transamination processes (PMID:33167 ). The compound's reactivity with modified enzymes also suggests its potential role in altering enzymatic functions, as seen in reactions involving transamination with L-alanine (PMID:7076657 ). Overall, 3-chloro-L-alanine serves as a valuable compound in biochemical research, contributing to our understanding of amino acid metabolism and enzyme regulation.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
3-Chloroalanine hydrochloride, (L-ala)-isomer	MeSH
3-Chloroalanine, (DL-ala)-isomer	MeSH
3-chloro-D-Alanine	MeSH
3-Chloroalanine	MeSH
3-Chloroalanine hydrochloride, (DL-ala)-isomer	MeSH
N-Chloroalanine	MeSH
beta-Chloroalanine	MeSH
3-Chloroalanine, (D-ala)-isomer	MeSH
3-Chloroalanine, (L-ala)-isomer	MeSH
beta-chloro-L-Alanine	MeSH
3-Chloroalanine hydrochloride, (D-ala)-isomer	MeSH
beta-chloro-D-Alanine	MeSH

Molecular Formula

C₃H₆ClNO₂

Average Mass

123.538

Monoisotopic Mass

123.008706148

IUPAC Name

(2R)-2-amino-3-chloropropanoic acid

Traditional Name

3-chloro-L-alanine

CAS Registry Number

Not Available

SMILES

[H][C@](N)(CCl)C(O)=O

InChI Identifier

InChI=1S/C3H6ClNO2/c4-1-2(5)3(6)7/h2H,1,5H2,(H,6,7)/t2-/m0/s1

InChI Key

ASBJGPTTYPEMLP-REOHCLBHSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

L-alpha-amino acids

Alternative Parents

Substituents

L-alpha-amino acid
Amino acid
Carboxylic acid
Monocarboxylic acid or derivatives
Organic oxygen compound
Hydrocarbon derivative
Organic nitrogen compound
Primary amine
Organooxygen compound
Organonitrogen compound
Organochloride
Organohalogen compound
Alkyl chloride
Primary aliphatic amine
Carbonyl group
Amine
Alkyl halide
Organic oxide
Organopnictogen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

L-alanine derivative (CHEBI:17403 )
chloroalanine (CHEBI:17403 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	227 g/L	ALOGPS
logP	-2.8	ALOGPS
logP	-2.5	ChemAxon
logS	0.27	ALOGPS
pKa (Strongest Acidic)	1.7	ChemAxon
pKa (Strongest Basic)	8.52	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	63.32 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	25.09 m³·mol⁻¹	ChemAxon
Polarizability	10.51 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-09	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

This table shows at most 5 pathways. For the full list of associated pathways:

See All Associated Bacterial Pathways

Name	SMPDB/PathBank	Species

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	1

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

C02635

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

439772

PDB ID

Not Available

ChEBI ID

17403

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for 3-chloro-L-alanine (MMDBc0054218)

MOL for #<Metabolite:0x00007f2af454fdc8>

3D MOL for #<Metabolite:0x00007f2af454fdc8>

3D SDF for #<Metabolite:0x00007f2af454fdc8>

3D-SDF for #<Metabolite:0x00007f2af454fdc8>

PDB for #<Metabolite:0x00007f2af454fdc8>

3D PDB for #<Metabolite:0x00007f2af454fdc8>

SMILES for #<Metabolite:0x00007f2af454fdc8>

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3D Structure for #<Metabolite:0x00007f2af454fdc8>