MiMeDB: Showing metabocard for 3,5-dichlorocatechol (MMDBc0054250)

Xenobiotic

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2022-06-05 23:01:28 UTC

Update Date

2025-10-07 16:08:26 UTC

Metabolite ID

MMDBc0054250

Metabolite Identification

Common Name

3,5-dichlorocatechol

Description

3,5-dichlorocatechol is a chlorinated phenolic compound belonging to the class of catechols. Its chemical structure features two chlorine atoms positioned at the 3 and 5 carbon atoms of the catechol backbone, which is characterized by a benzene ring with two hydroxyl groups. In biochemical pathways, 3,5-dichlorocatechol is involved in the microbial degradation of chlorinated aromatic compounds, such as 2,4-dichlorophenol (2,4-D), through ortho ring-cleavage mechanisms. The enzymatic conversion of 2,4-D to 3,5-dichlorocatechol is facilitated by dioxygenase enzymes, which catalyze the transformation of 2,4-D into 2,4-dichlorophenol and subsequently into 3,5-dichlorocatechol (PMID:40990685 ; PMID:39869974 ). Additionally, it has been identified as a product of whole-cell biotransformation processes, highlighting its role in environmental detoxification (PMID:39173390 ). Furthermore, 3,5-dichlorocatechol has demonstrated vasodilatory activity, indicating potential physiological effects (PMID:39159736 ). Its presence as a urinary metabolite after exposure to dichlorobenzene also underscores its relevance in toxicological studies (PMID:36717398 ; PMID:35671459 ).

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
1,2-Dihydroxy-4,6-dichlorobenzene	ChEBI

Molecular Formula

C₆H₄Cl₂O₂

Average Mass

179.001

Monoisotopic Mass

177.958834786

IUPAC Name

3,5-dichlorobenzene-1,2-diol

Traditional Name

3,5-dichlorocatechol

CAS Registry Number

Not Available

SMILES

OC1=CC(Cl)=CC(Cl)=C1O

InChI Identifier

InChI=1S/C6H4Cl2O2/c7-3-1-4(8)6(10)5(9)2-3/h1-2,9-10H

InChI Key

XSXYVLIPQMXCBV-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 4-chlorocatechols. These are chlorocatechols with the chlorine atom attached at position C4 of the benzene ring.

Kingdom

Super Class

Class

Sub Class

Direct Parent

Alternative Parents

Substituents

3-chlorocatechol
4-chlorocatechol
4-chlorophenol
1,3-dichlorobenzene
2-chlorophenol
3-chlorophenol
2-halophenol
3-halophenol
4-halophenol
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Chlorobenzene
Halobenzene
Aryl chloride
Aryl halide
Monocyclic benzene moiety
Hydrocarbon derivative
Organic oxygen compound
Organooxygen compound
Organochloride
Organohalogen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

dichlorocatechol (CHEBI:15788 )
a chloroaromatic compound (35-DICHLOROCATECHOL )
a catechol (35-DICHLOROCATECHOL )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	5.37 g/L	ALOGPS
logP	2.68	ALOGPS
logP	2.57	ChemAxon
logS	-1.5	ALOGPS
pKa (Strongest Acidic)	7.57	ChemAxon
pKa (Strongest Basic)	-7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	40.46 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	39.63 m³·mol⁻¹	ChemAxon
Polarizability	15.09 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-004i-0900000000-08381ce7629d83b4bf41	2019-02-23	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-004i-0900000000-c476d9bf9c95abfbc743	2019-02-23	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-03dr-3900000000-07a249f3dabc4ca6f75d	2019-02-23	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-004i-0900000000-fa221223b5b9ade6e569	2019-02-23	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-004i-0900000000-b9f7825097a5684260c8	2019-02-23	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-0006-1900000000-74decefd9ed3d5703783	2019-02-23	View Spectrum
MS	Mass Spectrum (Electron Ionization)	Not Available	2022-08-06	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-24	355.0
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-24	101.8
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (void)	2025-10-24	472.9
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-24	648.5
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-24	612.4
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (void)	2025-10-24	518.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	1704.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-24	389.2
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-24	900.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	384.6
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-24	301.7
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	372.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	198.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-24	259.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-24	788.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	350.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	439.6
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-24	1325.6
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-24	1142.3

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	3,5-dichlorocatechol_TMS_1	C[Si](C)(C)OC1=CC(Cl)=CC(Cl)=C1O	standard non polar	2025-10-24	1686.03
Gas Chromatography	3,5-dichlorocatechol_TMS_2	C[Si](C)(C)OC1=C(O)C=C(Cl)C=C1Cl	standard non polar	2025-10-24	2048.82
Gas Chromatography	3,5-dichlorocatechol_TMS_3	C[Si](C)(C)OC1=CC(Cl)=CC(Cl)=C1O[Si](C)(C)C	standard non polar	2025-10-24	2375.96
Gas Chromatography	3,5-dichlorocatechol_TMS_1	C[Si](C)(C)OC1=CC(Cl)=CC(Cl)=C1O	standard polar	2025-10-24	2241.81
Gas Chromatography	3,5-dichlorocatechol_TMS_2	C[Si](C)(C)OC1=C(O)C=C(Cl)C=C1Cl	standard polar	2025-10-24	1875.22
Gas Chromatography	3,5-dichlorocatechol_TMS_3	C[Si](C)(C)OC1=CC(Cl)=CC(Cl)=C1O[Si](C)(C)C	standard polar	2025-10-24	2125.69

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites
Bacteria/Eubacteria	Proteobacteria	4	Human ; Human subgingival plaque
Bacteria	Actinobacteria	1
Bacteria	Proteobacteria	1	Human ; Human subgingival plaque

Exposure Sources

Other Exposures

Source Type	Data Source	Reference
Cosmetics	U.S. Environmental Protection Agency	CompTox
Domestics	U.S. Environmental Protection Agency	CompTox
Domestics	U.S. Environmental Protection Agency	CompTox

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

C02933

BioCyc ID

35-DICHLOROCATECHOL

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

26173

PDB ID

Not Available

ChEBI ID

15788

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for 3,5-dichlorocatechol (MMDBc0054250)

MOL for #<Metabolite:0x00007f9ad1864d18>

3D MOL for #<Metabolite:0x00007f9ad1864d18>

3D SDF for #<Metabolite:0x00007f9ad1864d18>

3D-SDF for #<Metabolite:0x00007f9ad1864d18>

PDB for #<Metabolite:0x00007f9ad1864d18>

3D PDB for #<Metabolite:0x00007f9ad1864d18>

SMILES for #<Metabolite:0x00007f9ad1864d18>

INCHI for #<Metabolite:0x00007f9ad1864d18>

Structure for #<Metabolite:0x00007f9ad1864d18>

3D Structure for #<Metabolite:0x00007f9ad1864d18>