MiMeDB: Showing metabocard for 2-hydroxy-(1H-indol-3-yl)acetic acid (MMDBc0055231)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2022-06-17 19:46:54 UTC

Update Date

2025-10-07 16:09:01 UTC

Metabolite ID

MMDBc0055231

Metabolite Identification

Common Name

2-hydroxy-(1H-indol-3-yl)acetic acid

Description

2-hydroxy-(1H-indol-3-yl)acetic acid is a member of the indole derivative chemical class. There is limited literature available on this metabolite, indicating that further research may be necessary to fully understand its biological significance and potential applications.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652306172221462D          

 14 15  0  0  0  0            999 V2000
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838    0.0709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0768   -0.1006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1781   -0.8853    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4752    0.5124    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   -0.1712    1.5229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  6  3  2  0  0  0  0
  7  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  4  2  0  0  0  0
  8  6  1  0  0  0  0
  9  5  1  0  0  0  0
 10  7  2  0  0  0  0
 11  8  1  0  0  0  0
 11 10  1  0  0  0  0
 12  9  2  0  0  0  0
 13  9  1  0  0  0  0
 14 10  1  0  0  0  0
M  CHG  1  13  -1
M  END
> <DATABASE_ID>
MMDBc0055231

> <DATABASE_NAME>
MIME

> <SMILES>
OC1=C(CC([O-])=O)C2=CC=CC=C2N1

> <INCHI_IDENTIFIER>
InChI=1S/C10H9NO3/c12-9(13)5-7-6-3-1-2-4-8(6)11-10(7)14/h1-4,11,14H,5H2,(H,12,13)/p-1

> <INCHI_KEY>
CBECDMSAFNHLHY-UHFFFAOYSA-M

> <FORMULA>
C10H8NO3

> <MOLECULAR_WEIGHT>
190.179

> <EXACT_MASS>
190.050966702

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
22

> <JCHEM_AVERAGE_POLARIZABILITY>
18.398669528760905

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
-1

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-(2-hydroxy-1H-indol-3-yl)acetate

> <JCHEM_LOGP>
1.4954817853333333

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
8.654278847258759

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.268512991750888

> <JCHEM_PKA_STRONGEST_BASIC>
-8.629550406690669

> <JCHEM_POLAR_SURFACE_AREA>
76.14999999999999

> <JCHEM_REFRACTIVITY>
60.5234

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2-hydroxy-1H-indol-3-yl)acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUN-22         0                                  
HETATM    1  C   UNK     0       6.258   2.073   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.258   3.613   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.924   1.303   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.924   4.383   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.650   0.132   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.590   2.073   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.126   1.597   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.590   3.613   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.143  -0.188   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.220   2.843   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       2.126   4.089   0.000  0.00  0.00           N+0
HETATM   12  O   UNK     0      -0.333  -1.652   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      -0.887   0.957   0.000  0.00  0.00           O-1
HETATM   14  O   UNK     0      -0.320   2.843   0.000  0.00  0.00           O+0
CONECT    1    2    3                                                       
CONECT    2    1    4                                                       
CONECT    3    1    6                                                       
CONECT    4    2    8                                                       
CONECT    5    7    9                                                       
CONECT    6    3    7    8                                                  
CONECT    7    5    6   10                                                  
CONECT    8    4    6   11                                                  
CONECT    9    5   12   13                                                  
CONECT   10    7   11   14                                                  
CONECT   11    8   10                                                       
CONECT   12    9                                                            
CONECT   13    9                                                            
CONECT   14   10                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   30    0
END

Synonyms

Value	Source
2-Hydroxy-(1H-indol-3-yl)acetate	ChEBI
2-Hydroxy-(1H-indol-3-yl)acetic acid	Generator
(2-Hydroxy-1H-indol-3-yl)acetic acid	Generator

Molecular Formula

C₁₀H₈NO₃

Average Mass

190.179

Monoisotopic Mass

190.050966702

IUPAC Name

2-(2-hydroxy-1H-indol-3-yl)acetate

Traditional Name

(2-hydroxy-1H-indol-3-yl)acetate

CAS Registry Number

Not Available

SMILES

OC1=C(CC([O-])=O)C2=CC=CC=C2N1

InChI Identifier

InChI=1S/C10H9NO3/c12-9(13)5-7-6-3-1-2-4-8(6)11-10(7)14/h1-4,11,14H,5H2,(H,12,13)/p-1

InChI Key

CBECDMSAFNHLHY-UHFFFAOYSA-M

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as indole-3-acetic acid derivatives. Indole-3-acetic acid derivatives are compounds containing an acetic acid (or a derivative) linked to the C3 carbon atom of an indole.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Indolyl carboxylic acids and derivatives

Direct Parent

Indole-3-acetic acid derivatives

Alternative Parents

Substituents

Indole-3-acetic acid derivative
3-alkylindole
Hydroxyindole
Indole
Substituted pyrrole
Benzenoid
Pyrrole
Heteroaromatic compound
Carboxylic acid salt
Azacycle
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Carbonyl group
Organic oxide
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Organic nitrogen compound
Hydrocarbon derivative
Organic anion
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
logP	1.5	ChemAxon
pKa (Strongest Acidic)	4.27	ChemAxon
pKa (Strongest Basic)	-8.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	76.15 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	60.52 m³·mol⁻¹	ChemAxon
Polarizability	18.4 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	2-hydroxy-(1H-indol-3-yl)acetic acid_TMS_1	C[Si](C)(C)OC1=C(CC(=O)[O-])C2=CC=CC=C2[NH]1	standard non polar	2025-10-24	2026.98
Gas Chromatography	2-hydroxy-(1H-indol-3-yl)acetic acid_TMS_2	C[Si](C)(C)N1C(O)=C(CC(=O)[O-])C2=CC=CC=C21	standard non polar	2025-10-24	1875.03
Gas Chromatography	2-hydroxy-(1H-indol-3-yl)acetic acid_TMS_3	C[Si](C)(C)OC1=C(CC(=O)[O-])C2=CC=CC=C2N1[Si](C)(C)C	standard non polar	2025-10-24	2252.52
Gas Chromatography	2-hydroxy-(1H-indol-3-yl)acetic acid_TMS_1	C[Si](C)(C)OC1=C(CC(=O)[O-])C2=CC=CC=C2[NH]1	standard polar	2025-10-24	1540.19
Gas Chromatography	2-hydroxy-(1H-indol-3-yl)acetic acid_TMS_2	C[Si](C)(C)N1C(O)=C(CC(=O)[O-])C2=CC=CC=C21	standard polar	2025-10-24	2532.66
Gas Chromatography	2-hydroxy-(1H-indol-3-yl)acetic acid_TMS_3	C[Si](C)(C)OC1=C(CC(=O)[O-])C2=CC=CC=C2N1[Si](C)(C)C	standard polar	2025-10-24	2049.09

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	1	Human
Bacteria/Eubacteria	Proteobacteria	1	Human

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

58827353

KEGG Compound ID

Not Available

BioCyc ID

CPD-15555

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

90657258

PDB ID

Not Available

ChEBI ID

136436

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for 2-hydroxy-(1H-indol-3-yl)acetic acid (MMDBc0055231)

MOL for #<Metabolite:0x00007fae009a5000>

3D MOL for #<Metabolite:0x00007fae009a5000>

3D SDF for #<Metabolite:0x00007fae009a5000>

3D-SDF for #<Metabolite:0x00007fae009a5000>

PDB for #<Metabolite:0x00007fae009a5000>

3D PDB for #<Metabolite:0x00007fae009a5000>

SMILES for #<Metabolite:0x00007fae009a5000>

INCHI for #<Metabolite:0x00007fae009a5000>

Structure for #<Metabolite:0x00007fae009a5000>

3D Structure for #<Metabolite:0x00007fae009a5000>