Showing metabocard for 2-oxooctanoic acid (MMDBc0055275)

Record Information
Version2.0
StatusDetected and Quantified
Creation Date2022-06-17 19:47:59 UTC
Update Date2025-10-07 16:09:02 UTC
Metabolite IDMMDBc0055275
Metabolite Identification
Common Name2-oxooctanoic acid
Description2-oxooctanoic acid is a member of the α-keto acid chemical class, characterized by its ketone functional group adjacent to a carboxylic acid. This metabolite plays a role in various biochemical pathways, including the conversion of fatty acids, as demonstrated by its production from octanoic acid under mild conditions, achieving over 99% conversion without hydroxyacid accumulation (PMID:29125663 ). Its unique reactivity is highlighted in studies showing that 2-oxooctanoic acid undergoes distinct acid-mediated photochemical processes compared to other compounds, contributing to the formation of amphiphilic molecules (PMID:24559493 ). Additionally, it has been shown to react with other α-keto acids, such as pyruvic acid, in the synthesis of fatty acid derivatives (PMID:29806009 ). The compound also exhibits increased binding affinity in certain enzymatic variants, indicating its significance in metabolic pathways involving α- and β-unnatural amino acids (PMID:30478262 ). Furthermore, the hydration and deprotonation characteristics of 2-oxooctanoic acid have been studied in relation to pH, providing insight into its behavior in aqueous environments (PMID:29032688 ).
Structure
MOLSDFPDBSMILESInChI

MOL for #<Metabolite:0x00007fae0043bc68>


  Mrv1652306172221472D          

 11 10  0  0  0  0            999 V2000
    2.9980    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8559    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    3.3809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    7.9993    1.3184    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  7  2  0  0  0  0
 10  8  1  0  0  0  0
 11  8  2  0  0  0  0
M  CHG  1  10  -1
M  END
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3D MOL for #<Metabolite:0x00007fae0043bc68>

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3D SDF for #<Metabolite:0x00007fae0043bc68>

  Mrv1652306172221472D          

 11 10  0  0  0  0            999 V2000
    2.9980    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8559    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    3.3809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    7.9993    1.3184    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  7  2  0  0  0  0
 10  8  1  0  0  0  0
 11  8  2  0  0  0  0
M  CHG  1  10  -1
M  END
> <DATABASE_ID>
MMDBc0055275

> <DATABASE_NAME>
MIME

> <SMILES>
CCCCCCC(=O)C([O-])=O

> <INCHI_IDENTIFIER>
InChI=1S/C8H14O3/c1-2-3-4-5-6-7(9)8(10)11/h2-6H2,1H3,(H,10,11)/p-1

> <INCHI_KEY>
GPPUPQFYDYLTIY-UHFFFAOYSA-M

> <FORMULA>
C8H13O3

> <MOLECULAR_WEIGHT>
157.19

> <EXACT_MASS>
157.087017859

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
24

> <JCHEM_AVERAGE_POLARIZABILITY>
16.887093543684546

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
-1

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-oxooctanoate

> <JCHEM_LOGP>
2.5446844603333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.7389876825890194

> <JCHEM_PKA_STRONGEST_BASIC>
-9.656703205204686

> <JCHEM_POLAR_SURFACE_AREA>
57.2

> <JCHEM_REFRACTIVITY>
51.8577

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2-oxooctanoate

> <JCHEM_VEBER_RULE>
0

$$$$

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3D-SDF for #<Metabolite:0x00007fae0043bc68>
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PDB for #<Metabolite:0x00007fae0043bc68>
HEADER    PROTEIN                                 17-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUN-22         0                                  
HETATM    1  C   UNK     0       5.596   4.771   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.930   4.001   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.264   4.771   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.597   4.001   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.931   4.771   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      12.265   4.001   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      13.598   4.771   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      14.932   4.001   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      13.598   6.311   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      16.266   4.771   0.000  0.00  0.00           O-1
HETATM   11  O   UNK     0      14.932   2.461   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7   10   11                                                  
CONECT    9    7                                                            
CONECT   10    8                                                            
CONECT   11    8                                                            
MASTER        0    0    0    0    0    0    0    0   11    0   20    0
END

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3D PDB for #<Metabolite:0x00007fae0043bc68>
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SMILES for #<Metabolite:0x00007fae0043bc68>
CCCCCCC(=O)C([O-])=O
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INCHI for #<Metabolite:0x00007fae0043bc68>
InChI=1S/C8H14O3/c1-2-3-4-5-6-7(9)8(10)11/h2-6H2,1H3,(H,10,11)/p-1
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Synonyms
ValueSource
2-Keto-N-caprylateChEBI
2-oxo-OctanoateChEBI
2-OxocaprylateChEBI
alpha-KetooctanoateChEBI
2-Keto-N-caprylic acidGenerator
2-oxo-Octanoic acidGenerator
2-Oxocaprylic acidGenerator
a-KetooctanoateGenerator
a-Ketooctanoic acidGenerator
alpha-Ketooctanoic acidGenerator
Α-ketooctanoateGenerator
Α-ketooctanoic acidGenerator
2-Oxooctanoic acidGenerator
Molecular FormulaC8H13O3
Average Mass157.19
Monoisotopic Mass157.087017859
IUPAC Name2-oxooctanoate
Traditional Name2-oxooctanoate
CAS Registry NumberNot Available
SMILES
CCCCCCC(=O)C([O-])=O
InChI Identifier
InChI=1S/C8H14O3/c1-2-3-4-5-6-7(9)8(10)11/h2-6H2,1H3,(H,10,11)/p-1
InChI KeyGPPUPQFYDYLTIY-UHFFFAOYSA-M