MiMeDB: Showing metabocard for 4-methylpent-2-enoyl-CoA (MMDBc0055521)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2022-06-17 19:57:46 UTC

Update Date

2025-10-07 16:09:09 UTC

Metabolite ID

MMDBc0055521

Metabolite Identification

Common Name

4-methylpent-2-enoyl-CoA

Description

4-methylpent-2-enoyl-CoA is a member of the acyl-CoA thioester class of compounds, characterized by its enoyl structure. This metabolite plays a role in the metabolic pathway of branched-chain fatty acid degradation, specifically in the conversion of (R)-2-hydroxy-4-methylpentanoyl-CoA to 4-methylpent-2-enoyl-CoA through a dehydration reaction, which is identified as the most chemically demanding step in this reductive pathway (PMID:18337824 ). Its structure features a methyl group at the 4-position and a double bond between the second and third carbon atoms, contributing to its unique reactivity and function. Additionally, studies involving spectroscopic analysis have shown that 4-methylpent-2-enoyl-CoA, alongside other acyl-CoA derivatives, exhibits distinct long-wavelength absorption bands, indicating its interaction with enzymatic systems (PMID:5145911 ). This highlights its relevance in biochemical pathways, particularly those associated with energy metabolism and fatty acid synthesis.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652306172221572D          

 60 62  0  0  1  0            999 V2000
    2.2893   14.0584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5749   15.2959    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5383   13.2334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8883   13.2334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8604   14.0584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1459   14.4709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8554   14.0584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5698   14.4709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7120   14.4709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9975   14.0584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8567    8.6959    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7133   12.4084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.0280    6.5155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3874    5.8232    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5749   14.4709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5711    8.2834    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1409   14.4709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5685   14.0584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6931    5.5457    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8768    8.0058    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  -11.3248    8.6189    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.7133   14.0584    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  -13.4468    5.2101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6069    6.3662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9988   14.4709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4643    7.2914    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.7133   13.2334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5330    4.3896    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4264   14.0584    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2843   14.0584    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  -14.1142    5.6950    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  -13.2743    6.8511    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  -11.9394    5.2101    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7999    6.5377    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1409   15.2959    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   -0.5685   13.2334    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6973    8.0921    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4277   14.4709    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9988   15.2959    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
  -10.3312    9.3648    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
  -11.4353   10.5910    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
  -10.2701   10.5300    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5547   10.6478    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7297    9.2189    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2527   11.1709    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6027   11.1709    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8567    9.5209    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4277   11.9959    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6574    7.4629    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4963    9.4259    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4277   10.3459    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8832    9.9779    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1422    9.9334    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4277   11.1709    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2830   14.4709    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6143    9.1072    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1725    8.7760    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1533    7.8119    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9988   13.6459    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2882    7.2482    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  5  2  0  0  0  0
  8  7  1  0  0  0  0
 10  9  1  0  0  0  0
 15  1  1  0  0  0  0
 15  2  1  0  0  0  0
 15  5  1  0  0  0  0
 16 11  1  1  0  0  0
 17  7  1  0  0  0  0
  6 18  1  4  0  0  0
 21 16  1  0  0  0  0
 21 20  1  0  0  0  0
 23 19  2  0  0  0  0
 24 19  1  0  0  0  0
 25 22  1  0  0  0  0
 26 20  1  0  0  0  0
 27  3  1  0  0  0  0
 27  4  1  0  0  0  0
 27 12  1  0  0  0  0
 27 22  1  0  0  0  0
 28 23  1  0  0  0  0
 29  9  1  4  0  0  0
 29 17  2  0  0  0  0
 30  8  1  4  0  0  0
 30 25  2  0  0  0  0
 31 13  2  0  0  0  0
 31 23  1  0  0  0  0
 32 13  1  0  0  0  0
 32 24  2  0  0  0  0
 33 14  2  0  0  0  0
 33 19  1  0  0  0  0
 34 14  1  0  0  0  0
 34 24  1  0  0  0  0
 26 34  1  1  0  0  0
 35 17  1  0  0  0  0
 36 18  2  0  0  0  0
 20 37  1  6  0  0  0
 22 38  1  6  0  0  0
 39 25  1  0  0  0  0
 47 11  1  0  0  0  0
 48 12  1  0  0  0  0
 49 16  1  0  0  0  0
 49 26  1  0  0  0  0
 21 50  1  1  0  0  0
 52 40  1  0  0  0  0
 52 41  1  0  0  0  0
 52 42  2  0  0  0  0
 52 50  1  0  0  0  0
 53 43  1  0  0  0  0
 53 44  2  0  0  0  0
 53 47  1  0  0  0  0
 53 51  1  0  0  0  0
 54 45  1  0  0  0  0
 54 46  2  0  0  0  0
 54 48  1  0  0  0  0
 54 51  1  0  0  0  0
 55 10  1  0  0  0  0
 55 18  1  0  0  0  0
 16 56  1  6  0  0  0
 20 57  1  1  0  0  0
 21 58  1  1  0  0  0
 22 59  1  6  0  0  0
 26 60  1  6  0  0  0
M  CHG  4  35  -1  39  -1  40  -1  41  -1
M  END


  Mrv1652306172221572D          

 60 62  0  0  1  0            999 V2000
    2.2893   14.0584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5749   15.2959    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5383   13.2334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8883   13.2334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8604   14.0584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1459   14.4709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8554   14.0584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5698   14.4709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7120   14.4709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9975   14.0584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8567    8.6959    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7133   12.4084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.0280    6.5155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3874    5.8232    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5749   14.4709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5711    8.2834    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1409   14.4709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5685   14.0584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6931    5.5457    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8768    8.0058    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  -11.3248    8.6189    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.7133   14.0584    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  -13.4468    5.2101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6069    6.3662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9988   14.4709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4643    7.2914    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.7133   13.2334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5330    4.3896    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4264   14.0584    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2843   14.0584    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  -14.1142    5.6950    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  -13.2743    6.8511    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  -11.9394    5.2101    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7999    6.5377    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1409   15.2959    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   -0.5685   13.2334    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6973    8.0921    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4277   14.4709    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9988   15.2959    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
  -10.3312    9.3648    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
  -11.4353   10.5910    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
  -10.2701   10.5300    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5547   10.6478    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7297    9.2189    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2527   11.1709    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6027   11.1709    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8567    9.5209    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4277   11.9959    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6574    7.4629    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4963    9.4259    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4277   10.3459    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8832    9.9779    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1422    9.9334    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4277   11.1709    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2830   14.4709    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6143    9.1072    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1725    8.7760    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1533    7.8119    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9988   13.6459    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2882    7.2482    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  5  2  0  0  0  0
  8  7  1  0  0  0  0
 10  9  1  0  0  0  0
 15  1  1  0  0  0  0
 15  2  1  0  0  0  0
 15  5  1  0  0  0  0
 16 11  1  1  0  0  0
 17  7  1  0  0  0  0
  6 18  1  4  0  0  0
 21 16  1  0  0  0  0
 21 20  1  0  0  0  0
 23 19  2  0  0  0  0
 24 19  1  0  0  0  0
 25 22  1  0  0  0  0
 26 20  1  0  0  0  0
 27  3  1  0  0  0  0
 27  4  1  0  0  0  0
 27 12  1  0  0  0  0
 27 22  1  0  0  0  0
 28 23  1  0  0  0  0
 29  9  1  4  0  0  0
 29 17  2  0  0  0  0
 30  8  1  4  0  0  0
 30 25  2  0  0  0  0
 31 13  2  0  0  0  0
 31 23  1  0  0  0  0
 32 13  1  0  0  0  0
 32 24  2  0  0  0  0
 33 14  2  0  0  0  0
 33 19  1  0  0  0  0
 34 14  1  0  0  0  0
 34 24  1  0  0  0  0
 26 34  1  1  0  0  0
 35 17  1  0  0  0  0
 36 18  2  0  0  0  0
 20 37  1  6  0  0  0
 22 38  1  6  0  0  0
 39 25  1  0  0  0  0
 47 11  1  0  0  0  0
 48 12  1  0  0  0  0
 49 16  1  0  0  0  0
 49 26  1  0  0  0  0
 21 50  1  1  0  0  0
 52 40  1  0  0  0  0
 52 41  1  0  0  0  0
 52 42  2  0  0  0  0
 52 50  1  0  0  0  0
 53 43  1  0  0  0  0
 53 44  2  0  0  0  0
 53 47  1  0  0  0  0
 53 51  1  0  0  0  0
 54 45  1  0  0  0  0
 54 46  2  0  0  0  0
 54 48  1  0  0  0  0
 54 51  1  0  0  0  0
 55 10  1  0  0  0  0
 55 18  1  0  0  0  0
 16 56  1  6  0  0  0
 20 57  1  1  0  0  0
 21 58  1  1  0  0  0
 22 59  1  6  0  0  0
 26 60  1  6  0  0  0
M  CHG  4  35  -1  39  -1  40  -1  41  -1
M  END
> <DATABASE_ID>
MMDBc0055521

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@](O)(C([O-])=NCCC([O-])=NCCSC(=O)C=CC(C)C)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@@]1([H])O[C@@]([H])(N2C=NC3=C(N)N=CN=C23)[C@]([H])(O)[C@]1([H])OP([O-])([O-])=O

> <INCHI_IDENTIFIER>
InChI=1S/C27H44N7O17P3S/c1-15(2)5-6-18(36)55-10-9-29-17(35)7-8-30-25(39)22(38)27(3,4)12-48-54(45,46)51-53(43,44)47-11-16-21(50-52(40,41)42)20(37)26(49-16)34-14-33-19-23(28)31-13-32-24(19)34/h5-6,13-16,20-22,26,37-38H,7-12H2,1-4H3,(H,29,35)(H,30,39)(H,43,44)(H,45,46)(H2,28,31,32)(H2,40,41,42)/p-4/t16-,20-,21-,22+,26-/m1/s1

> <INCHI_KEY>
GJLUGLKKLPHWPU-HDRQGHTBSA-J

> <FORMULA>
C27H40N7O17P3S

> <MOLECULAR_WEIGHT>
859.63

> <EXACT_MASS>
859.143619344

> <JCHEM_ACCEPTOR_COUNT>
19

> <JCHEM_ATOM_COUNT>
95

> <JCHEM_AVERAGE_POLARIZABILITY>
77.62357153463246

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
-4

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-4-({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-2-hydroxy-3,3-dimethyl-N-[2-({2-[(4-methylpent-2-enoyl)sulfanyl]ethyl}-C-hydroxycarbonimidoyl)ethyl]butanecarboximidate

> <JCHEM_LOGP>
-3.512933686146954

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-4

> <JCHEM_PKA>
1.8858507367538717

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.8191012234761255

> <JCHEM_PKA_STRONGEST_BASIC>
6.446835096556951

> <JCHEM_POLAR_SURFACE_AREA>
381.9300000000001

> <JCHEM_REFRACTIVITY>
211.57940000000008

> <JCHEM_ROTATABLE_BOND_COUNT>
22

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-4-[({[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy(hydroxy)phosphoryl}oxy(hydroxy)phosphoryl)oxy]-2-hydroxy-3,3-dimethyl-N-[2-({2-[(4-methylpent-2-enoyl)sulfanyl]ethyl}-C-hydroxycarbonimidoyl)ethyl]butanecarboximidate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUN-22         0                                  
HETATM    1  C   UNK     0       4.273  26.242   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.940  28.552   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -15.938  24.702   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -12.858  24.702   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.606  26.242   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.272  27.012   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -9.063  26.242   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -10.397  27.012   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -5.062  27.012   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.729  26.242   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0     -18.399  16.232   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0     -14.398  23.162   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -26.186  12.162   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0     -21.256  10.870   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.940  27.012   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0     -19.733  15.462   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -7.730  27.012   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.061  26.242   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0     -23.694  10.352   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0     -22.170  14.944   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0     -21.140  16.089   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0     -14.398  26.242   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0     -25.101   9.726   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0     -23.533  11.883   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0     -13.064  27.012   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0     -21.400  13.611   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0     -14.398  24.702   0.000  0.00  0.00           C+0
HETATM   28  N   UNK     0     -25.262   8.194   0.000  0.00  0.00           N+0
HETATM   29  N   UNK     0      -6.396  26.242   0.000  0.00  0.00           N+0
HETATM   30  N   UNK     0     -11.731  26.242   0.000  0.00  0.00           N+0
HETATM   31  N   UNK     0     -26.347  10.631   0.000  0.00  0.00           N+0
HETATM   32  N   UNK     0     -24.779  12.789   0.000  0.00  0.00           N+0
HETATM   33  N   UNK     0     -22.287   9.726   0.000  0.00  0.00           N+0
HETATM   34  N   UNK     0     -22.026  12.204   0.000  0.00  0.00           N+0
HETATM   35  O   UNK     0      -7.730  28.552   0.000  0.00  0.00           O-1
HETATM   36  O   UNK     0      -1.061  24.702   0.000  0.00  0.00           O+0
HETATM   37  O   UNK     0     -23.702  15.105   0.000  0.00  0.00           O+0
HETATM   38  O   UNK     0     -15.732  27.012   0.000  0.00  0.00           O+0
HETATM   39  O   UNK     0     -13.064  28.552   0.000  0.00  0.00           O-1
HETATM   40  O   UNK     0     -19.285  17.481   0.000  0.00  0.00           O-1
HETATM   41  O   UNK     0     -21.346  19.770   0.000  0.00  0.00           O-1
HETATM   42  O   UNK     0     -19.171  19.656   0.000  0.00  0.00           O+0
HETATM   43  O   UNK     0     -17.835  19.876   0.000  0.00  0.00           O+0
HETATM   44  O   UNK     0     -16.295  17.209   0.000  0.00  0.00           O+0
HETATM   45  O   UNK     0     -17.272  20.852   0.000  0.00  0.00           O+0
HETATM   46  O   UNK     0     -14.192  20.852   0.000  0.00  0.00           O+0
HETATM   47  O   UNK     0     -18.399  17.772   0.000  0.00  0.00           O+0
HETATM   48  O   UNK     0     -15.732  22.392   0.000  0.00  0.00           O+0
HETATM   49  O   UNK     0     -19.894  13.931   0.000  0.00  0.00           O+0
HETATM   50  O   UNK     0     -21.460  17.595   0.000  0.00  0.00           O+0
HETATM   51  O   UNK     0     -15.732  19.312   0.000  0.00  0.00           O+0
HETATM   52  P   UNK     0     -20.315  18.625   0.000  0.00  0.00           P+0
HETATM   53  P   UNK     0     -17.065  18.542   0.000  0.00  0.00           P+0
HETATM   54  P   UNK     0     -15.732  20.852   0.000  0.00  0.00           P+0
HETATM   55  S   UNK     0      -2.395  27.012   0.000  0.00  0.00           S+0
HETATM   56  H   UNK     0     -19.813  17.000   0.000  0.00  0.00           H+0
HETATM   57  H   UNK     0     -22.722  16.382   0.000  0.00  0.00           H+0
HETATM   58  H   UNK     0     -20.819  14.582   0.000  0.00  0.00           H+0
HETATM   59  H   UNK     0     -13.064  25.472   0.000  0.00  0.00           H+0
HETATM   60  H   UNK     0     -22.938  13.530   0.000  0.00  0.00           H+0
CONECT    1   15                                                            
CONECT    2   15                                                            
CONECT    3   27                                                            
CONECT    4   27                                                            
CONECT    5    6   15                                                       
CONECT    6    5   18                                                       
CONECT    7    8   17                                                       
CONECT    8    7   30                                                       
CONECT    9   10   29                                                       
CONECT   10    9   55                                                       
CONECT   11   16   47                                                       
CONECT   12   27   48                                                       
CONECT   13   31   32                                                       
CONECT   14   33   34                                                       
CONECT   15    1    2    5                                                  
CONECT   16   11   21   49   56                                             
CONECT   17    7   29   35                                                  
CONECT   18    6   36   55                                                  
CONECT   19   23   24   33                                                  
CONECT   20   21   26   37   57                                             
CONECT   21   16   20   50   58                                             
CONECT   22   25   27   38   59                                             
CONECT   23   19   28   31                                                  
CONECT   24   19   32   34                                                  
CONECT   25   22   30   39                                                  
CONECT   26   20   34   49   60                                             
CONECT   27    3    4   12   22                                             
CONECT   28   23                                                            
CONECT   29    9   17                                                       
CONECT   30    8   25                                                       
CONECT   31   13   23                                                       
CONECT   32   13   24                                                       
CONECT   33   14   19                                                       
CONECT   34   14   24   26                                                  
CONECT   35   17                                                            
CONECT   36   18                                                            
CONECT   37   20                                                            
CONECT   38   22                                                            
CONECT   39   25                                                            
CONECT   40   52                                                            
CONECT   41   52                                                            
CONECT   42   52                                                            
CONECT   43   53                                                            
CONECT   44   53                                                            
CONECT   45   54                                                            
CONECT   46   54                                                            
CONECT   47   11   53                                                       
CONECT   48   12   54                                                       
CONECT   49   16   26                                                       
CONECT   50   21   52                                                       
CONECT   51   53   54                                                       
CONECT   52   40   41   42   50                                             
CONECT   53   43   44   47   51                                             
CONECT   54   45   46   48   51                                             
CONECT   55   10   18                                                       
CONECT   56   16                                                            
CONECT   57   20                                                            
CONECT   58   21                                                            
CONECT   59   22                                                            
CONECT   60   26                                                            
MASTER        0    0    0    0    0    0    0    0   60    0  124    0
END

Synonyms

Value	Source
4-Methylpent-2-enoyl-CoA	ChEBI

Molecular Formula

C₂₇H₄₀N₇O₁₇P₃S

Average Mass

859.63

Monoisotopic Mass

859.143619344

IUPAC Name

(2R)-4-({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-2-hydroxy-3,3-dimethyl-N-[2-({2-[(4-methylpent-2-enoyl)sulfanyl]ethyl}-C-hydroxycarbonimidoyl)ethyl]butanecarboximidate

Traditional Name

(2R)-4-[({[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy(hydroxy)phosphoryl}oxy(hydroxy)phosphoryl)oxy]-2-hydroxy-3,3-dimethyl-N-[2-({2-[(4-methylpent-2-enoyl)sulfanyl]ethyl}-C-hydroxycarbonimidoyl)ethyl]butanecarboximidate

CAS Registry Number

Not Available

SMILES

[H][C@](O)(C([O-])=NCCC([O-])=NCCSC(=O)C=CC(C)C)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@@]1([H])O[C@@]([H])(N2C=NC3=C(N)N=CN=C23)[C@]([H])(O)[C@]1([H])OP([O-])([O-])=O

InChI Identifier

InChI=1S/C27H44N7O17P3S/c1-15(2)5-6-18(36)55-10-9-29-17(35)7-8-30-25(39)22(38)27(3,4)12-48-54(45,46)51-53(43,44)47-11-16-21(50-52(40,41)42)20(37)26(49-16)34-14-33-19-23(28)31-13-32-24(19)34/h5-6,13-16,20-22,26,37-38H,7-12H2,1-4H3,(H,29,35)(H,30,39)(H,43,44)(H,45,46)(H2,28,31,32)(H2,40,41,42)/p-4/t16-,20-,21-,22+,26-/m1/s1

InChI Key

GJLUGLKKLPHWPU-HDRQGHTBSA-J

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 2-enoyl coas. These are organic compounds containing a coenzyme A substructure linked to a 2-enoyl chain.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acyl thioesters

Direct Parent

2-enoyl CoAs

Alternative Parents

Substituents

Coenzyme a or derivatives
Purine ribonucleoside 3',5'-bisphosphate
Purine ribonucleoside bisphosphate
Purine ribonucleoside diphosphate
Ribonucleoside 3'-phosphate
Pentose phosphate
Pentose-5-phosphate
Glycosyl compound
N-glycosyl compound
6-aminopurine
Monosaccharide phosphate
Organic pyrophosphate
Imidazopyrimidine
Purine
Aminopyrimidine
Monoalkyl phosphate
Alkyl phosphate
Pyrimidine
Imidolactam
Phosphoric acid ester
Monosaccharide
N-substituted imidazole
Organic phosphoric acid derivative
Tetrahydrofuran
Azole
Imidazole
Heteroaromatic compound
Thiocarboxylic acid ester
Secondary alcohol
Amino acid or derivatives
Carbothioic s-ester
Thiocarboxylic acid or derivatives
Sulfenyl compound
Carboximidic acid
Carboximidic acid derivative
Carboxylic acid derivative
Organoheterocyclic compound
Azacycle
Oxacycle
Organic oxide
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Alcohol
Amine
Primary amine
Hydrocarbon derivative
Organosulfur compound
Organooxygen compound
Carbonyl group
Organonitrogen compound
Organic anion
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

monounsaturated fatty acyl-CoA(4-) (CHEBI:87120 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
logP	-3.5	ChemAxon
pKa (Strongest Acidic)	0.82	ChemAxon
pKa (Strongest Basic)	6.45	ChemAxon
Physiological Charge	-4	ChemAxon
Hydrogen Acceptor Count	19	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	381.93 Å²	ChemAxon
Rotatable Bond Count	22	ChemAxon
Refractivity	211.58 m³·mol⁻¹	ChemAxon
Polarizability	77.62 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

This table shows at most 5 pathways. For the full list of associated pathways:

See All Associated Bacterial Pathways

Name	SMPDB/PathBank	Species

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0038894	4-methylpent-2-enoyl-CoA	4-Methylpent-2-enoic acid	Thioesterase TesA	Hydrolysis	RHEA	34755880

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Firmicutes	1	Human feces; Goat feces; Sheep feces; Human

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

CPD-18023

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139031761

PDB ID

Not Available

ChEBI ID

87120

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for 4-methylpent-2-enoyl-CoA (MMDBc0055521)

MOL for #<Metabolite:0x00007f2af4b1bbf8>

3D MOL for #<Metabolite:0x00007f2af4b1bbf8>

3D SDF for #<Metabolite:0x00007f2af4b1bbf8>

3D-SDF for #<Metabolite:0x00007f2af4b1bbf8>

PDB for #<Metabolite:0x00007f2af4b1bbf8>

3D PDB for #<Metabolite:0x00007f2af4b1bbf8>

SMILES for #<Metabolite:0x00007f2af4b1bbf8>

INCHI for #<Metabolite:0x00007f2af4b1bbf8>

Structure for #<Metabolite:0x00007f2af4b1bbf8>

3D Structure for #<Metabolite:0x00007f2af4b1bbf8>