Showing metabocard for 4-oxo-4-(pyridin-3-yl)butanoic acid (MMDBc0055538)

Record Information
Version2.0
StatusDetected and Quantified
Creation Date2022-06-17 19:58:24 UTC
Update Date2025-10-07 16:09:10 UTC
Metabolite IDMMDBc0055538
Metabolite Identification
Common Name4-oxo-4-(pyridin-3-yl)butanoic acid
Description4-oxo-4-(pyridin-3-yl)butanoic acid is a carboxylic acid derivative belonging to the class of pyridine-containing compounds. There is limited literature available on this metabolite, indicating that further research may be necessary to fully understand its properties and biological significance.
Structure
MOLSDFPDBSMILESInChI

MOL for #<Metabolite:0x00007f2e2aae9868>


  Mrv1652306172221582D          

 13 13  0  0  0  0            999 V2000
    5.7158    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -1.2375    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  4  3  1  0  0  0  0
  5  1  1  0  0  0  0
  7  2  1  0  0  0  0
  7  6  2  0  0  0  0
  8  3  1  0  0  0  0
  8  7  1  0  0  0  0
  9  4  1  0  0  0  0
 10  5  2  0  0  0  0
 10  6  1  0  0  0  0
 11  8  2  0  0  0  0
 12  9  2  0  0  0  0
 13  9  1  0  0  0  0
M  CHG  1  13  -1
M  END
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3D MOL for #<Metabolite:0x00007f2e2aae9868>

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3D SDF for #<Metabolite:0x00007f2e2aae9868>

  Mrv1652306172221582D          

 13 13  0  0  0  0            999 V2000
    5.7158    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -1.2375    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  4  3  1  0  0  0  0
  5  1  1  0  0  0  0
  7  2  1  0  0  0  0
  7  6  2  0  0  0  0
  8  3  1  0  0  0  0
  8  7  1  0  0  0  0
  9  4  1  0  0  0  0
 10  5  2  0  0  0  0
 10  6  1  0  0  0  0
 11  8  2  0  0  0  0
 12  9  2  0  0  0  0
 13  9  1  0  0  0  0
M  CHG  1  13  -1
M  END
> <DATABASE_ID>
MMDBc0055538

> <DATABASE_NAME>
MIME

> <SMILES>
[O-]C(=O)CCC(=O)C1=CN=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C9H9NO3/c11-8(3-4-9(12)13)7-2-1-5-10-6-7/h1-2,5-6H,3-4H2,(H,12,13)/p-1

> <INCHI_KEY>
JGSUNMCABQUBOY-UHFFFAOYSA-M

> <FORMULA>
C9H8NO3

> <MOLECULAR_WEIGHT>
178.168

> <EXACT_MASS>
178.050966702

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
21

> <JCHEM_AVERAGE_POLARIZABILITY>
17.09708829873454

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
-1

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
4-oxo-4-(pyridin-3-yl)butanoate

> <JCHEM_LOGP>
-0.5828774301236572

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
16.358027922307024

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.36251546914983

> <JCHEM_PKA_STRONGEST_BASIC>
4.003919475426097

> <JCHEM_POLAR_SURFACE_AREA>
70.09

> <JCHEM_REFRACTIVITY>
56.0343

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
4-oxo-4-(3-pyridyl)-butanoate

> <JCHEM_VEBER_RULE>
0

$$$$

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3D-SDF for #<Metabolite:0x00007f2e2aae9868>
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PDB for #<Metabolite:0x00007f2e2aae9868>
HEADER    PROTEIN                                 17-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUN-22         0                                  
HETATM    1  C   UNK     0      10.669   0.000   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.336  -0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.003  -0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.669  -3.080   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.336  -2.310   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.002  -3.080   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0      12.003  -2.310   0.000  0.00  0.00           N+0
HETATM   11  O   UNK     0       8.002  -4.620   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0       2.667  -3.080   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       4.001  -0.770   0.000  0.00  0.00           O-1
CONECT    1    2    5                                                       
CONECT    2    1    7                                                       
CONECT    3    4    8                                                       
CONECT    4    3    9                                                       
CONECT    5    1   10                                                       
CONECT    6    7   10                                                       
CONECT    7    2    6    8                                                  
CONECT    8    3    7   11                                                  
CONECT    9    4   12   13                                                  
CONECT   10    5    6                                                       
CONECT   11    8                                                            
CONECT   12    9                                                            
CONECT   13    9                                                            
MASTER        0    0    0    0    0    0    0    0   13    0   26    0
END

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3D PDB for #<Metabolite:0x00007f2e2aae9868>
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SMILES for #<Metabolite:0x00007f2e2aae9868>
[O-]C(=O)CCC(=O)C1=CN=CC=C1
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INCHI for #<Metabolite:0x00007f2e2aae9868>
InChI=1S/C9H9NO3/c11-8(3-4-9(12)13)7-2-1-5-10-6-7/h1-2,5-6H,3-4H2,(H,12,13)/p-1
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Synonyms
ValueSource
4-oxo-4-(Pyridin-3-yl)butanoic acidGenerator
Molecular FormulaC9H8NO3
Average Mass178.168
Monoisotopic Mass178.050966702
IUPAC Name4-oxo-4-(pyridin-3-yl)butanoate
Traditional Name4-oxo-4-(3-pyridyl)-butanoate
CAS Registry NumberNot Available
SMILES
[O-]C(=O)CCC(=O)C1=CN=CC=C1
InChI Identifier
InChI=1S/C9H9NO3/c11-8(3-4-9(12)13)7-2-1-5-10-6-7/h1-2,5-6H,3-4H2,(H,12,13)/p-1
InChI KeyJGSUNMCABQUBOY-UHFFFAOYSA-M