MiMeDB: Showing metabocard for Co-precorrin-3 (MMDBc0055813)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2022-06-17 20:07:26 UTC

Update Date

2025-10-07 16:09:22 UTC

Metabolite ID

MMDBc0055813

Metabolite Identification

Common Name

Co-precorrin-3

Description

Co-precorrin-3 is a cobalt-containing corrinoid compound belonging to the chemical class of corrinoids. There is limited literature available regarding this metabolite, indicating that further research may be needed to fully understand its biological significance and potential applications.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652306172222072D          

 67 70  0  0  1  0            999 V2000
    3.5148    0.0611    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1491    5.3387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4017    1.0637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7756    1.3214    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5866    1.5149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3572    5.7519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9593    3.3730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6398    1.1614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3021    2.4380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1367    6.2549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5721    4.1894    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9269    3.0792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9176    1.9341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7267    0.6964    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9299    3.6797    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9466    3.8829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8270    5.9701    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6799    1.7047    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7434    0.8996    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0500    1.8335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8102    1.0859    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1061    2.6566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9871    1.1420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7929    5.0030    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6233    2.7459    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.2499    1.6324    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0112    0.2858    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1153    3.0252    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9939    4.2029    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4234    2.9469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6621    4.2936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3886    0.7133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6097    3.2982    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7625    6.8612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9775    4.8208    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5428    3.7420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3377    2.7585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3583    6.7490    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9525    1.1722    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6794    0.3765    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3327    1.6152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9698    5.0591    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5672    1.9228    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.8114    2.3313    0.0000 N   0  5  0  0  0  0  0  0  0  0  0  0
    5.2951    3.7645    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.3123   -0.1527    0.0000 N   0  5  0  0  0  0  0  0  0  0  0  0
    3.8619    2.2481    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.3312   -0.1302    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.1786    1.0330    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    7.5607    3.4973    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6925    4.2364    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    7.6726    7.7010    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6320    6.8894    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    1.0257    5.6749    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1409    4.7108    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    9.3812    4.5873    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.2915    4.1507    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    3.7283    3.4328    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1268    2.9540    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    3.5453    7.0165    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5211    7.5981    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    0.7433    0.3373    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1057    1.3383    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   11.8389    1.5387    0.0000 Co  0  2  0  0  0  0  0  0  0  0  0  0
    8.0569    3.4801    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6015    4.8393    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8316    3.5442    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  4  1  0  0  0  0
  9  5  1  0  0  0  0
 10  6  1  0  0  0  0
 11  7  1  0  0  0  0
 19  1  1  0  0  0  0
 20  4  1  0  0  0  0
 21  5  1  0  0  0  0
 22 12  1  0  0  0  0
 22 20  1  0  0  0  0
 23 13  1  0  0  0  0
 23 21  1  0  0  0  0
 24  6  1  6  0  0  0
 25  7  1  6  0  0  0
 26 14  1  0  0  0  0
 26 20  2  0  0  0  0
 27 14  1  0  0  0  0
 27 21  2  0  0  0  0
 28 15  2  0  0  0  0
 28 22  1  0  0  0  0
 15 29  1  4  0  0  0
 29 24  1  0  0  0  0
 16 30  1  4  0  0  0
 30 25  1  0  0  0  0
 31 16  2  0  0  0  0
 32  8  1  0  0  0  0
 33  9  1  0  0  0  0
 34 10  1  0  0  0  0
 35 11  1  0  0  0  0
 36 12  1  0  0  0  0
 37 13  1  0  0  0  0
 38 17  1  0  0  0  0
 39 18  1  0  0  0  0
 40 19  1  0  0  0  0
 40 23  2  0  0  0  0
 41 19  2  0  0  0  0
 42  2  1  6  0  0  0
 42 17  1  1  0  0  0
 42 24  1  0  0  0  0
 42 31  1  0  0  0  0
 43  3  1  6  0  0  0
 43 18  1  1  0  0  0
 43 25  1  0  0  0  0
 43 41  1  0  0  0  0
 44 26  1  0  0  0  0
 44 28  1  0  0  0  0
 45 29  2  0  0  0  0
 45 31  1  0  0  0  0
 46 27  1  0  0  0  0
 46 40  1  0  0  0  0
 47 30  2  0  0  0  0
 47 41  1  0  0  0  0
 48 32  2  0  0  0  0
 49 32  1  0  0  0  0
 50 33  2  0  0  0  0
 51 33  1  0  0  0  0
 52 34  2  0  0  0  0
 53 34  1  0  0  0  0
 54 35  2  0  0  0  0
 55 35  1  0  0  0  0
 56 36  2  0  0  0  0
 57 36  1  0  0  0  0
 58 37  2  0  0  0  0
 59 37  1  0  0  0  0
 60 38  2  0  0  0  0
 61 38  1  0  0  0  0
 62 39  2  0  0  0  0
 63 39  1  0  0  0  0
 65 22  1  0  0  0  0
 24 66  1  1  0  0  0
 25 67  1  1  0  0  0
M  CHG  8  44  -1  46  -1  49  -1  51  -1  53  -1  55  -1  57  -1  59  -1
M  CHG  3  61  -1  63  -1  64   2
M  END


  Mrv1652306172222072D          

 67 70  0  0  1  0            999 V2000
    3.5148    0.0611    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1491    5.3387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4017    1.0637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7756    1.3214    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5866    1.5149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3572    5.7519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9593    3.3730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6398    1.1614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3021    2.4380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1367    6.2549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5721    4.1894    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9269    3.0792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9176    1.9341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7267    0.6964    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9299    3.6797    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9466    3.8829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8270    5.9701    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6799    1.7047    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7434    0.8996    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0500    1.8335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8102    1.0859    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1061    2.6566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9871    1.1420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7929    5.0030    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6233    2.7459    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.2499    1.6324    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0112    0.2858    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1153    3.0252    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9939    4.2029    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4234    2.9469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6621    4.2936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3886    0.7133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6097    3.2982    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7625    6.8612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9775    4.8208    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5428    3.7420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3377    2.7585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3583    6.7490    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9525    1.1722    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6794    0.3765    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3327    1.6152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9698    5.0591    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5672    1.9228    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.8114    2.3313    0.0000 N   0  5  0  0  0  0  0  0  0  0  0  0
    5.2951    3.7645    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.3123   -0.1527    0.0000 N   0  5  0  0  0  0  0  0  0  0  0  0
    3.8619    2.2481    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.3312   -0.1302    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.1786    1.0330    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    7.5607    3.4973    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6925    4.2364    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    7.6726    7.7010    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6320    6.8894    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    1.0257    5.6749    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1409    4.7108    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    9.3812    4.5873    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.2915    4.1507    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    3.7283    3.4328    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1268    2.9540    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    3.5453    7.0165    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5211    7.5981    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    0.7433    0.3373    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1057    1.3383    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   11.8389    1.5387    0.0000 Co  0  2  0  0  0  0  0  0  0  0  0  0
    8.0569    3.4801    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6015    4.8393    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8316    3.5442    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  4  1  0  0  0  0
  9  5  1  0  0  0  0
 10  6  1  0  0  0  0
 11  7  1  0  0  0  0
 19  1  1  0  0  0  0
 20  4  1  0  0  0  0
 21  5  1  0  0  0  0
 22 12  1  0  0  0  0
 22 20  1  0  0  0  0
 23 13  1  0  0  0  0
 23 21  1  0  0  0  0
 24  6  1  6  0  0  0
 25  7  1  6  0  0  0
 26 14  1  0  0  0  0
 26 20  2  0  0  0  0
 27 14  1  0  0  0  0
 27 21  2  0  0  0  0
 28 15  2  0  0  0  0
 28 22  1  0  0  0  0
 15 29  1  4  0  0  0
 29 24  1  0  0  0  0
 16 30  1  4  0  0  0
 30 25  1  0  0  0  0
 31 16  2  0  0  0  0
 32  8  1  0  0  0  0
 33  9  1  0  0  0  0
 34 10  1  0  0  0  0
 35 11  1  0  0  0  0
 36 12  1  0  0  0  0
 37 13  1  0  0  0  0
 38 17  1  0  0  0  0
 39 18  1  0  0  0  0
 40 19  1  0  0  0  0
 40 23  2  0  0  0  0
 41 19  2  0  0  0  0
 42  2  1  6  0  0  0
 42 17  1  1  0  0  0
 42 24  1  0  0  0  0
 42 31  1  0  0  0  0
 43  3  1  6  0  0  0
 43 18  1  1  0  0  0
 43 25  1  0  0  0  0
 43 41  1  0  0  0  0
 44 26  1  0  0  0  0
 44 28  1  0  0  0  0
 45 29  2  0  0  0  0
 45 31  1  0  0  0  0
 46 27  1  0  0  0  0
 46 40  1  0  0  0  0
 47 30  2  0  0  0  0
 47 41  1  0  0  0  0
 48 32  2  0  0  0  0
 49 32  1  0  0  0  0
 50 33  2  0  0  0  0
 51 33  1  0  0  0  0
 52 34  2  0  0  0  0
 53 34  1  0  0  0  0
 54 35  2  0  0  0  0
 55 35  1  0  0  0  0
 56 36  2  0  0  0  0
 57 36  1  0  0  0  0
 58 37  2  0  0  0  0
 59 37  1  0  0  0  0
 60 38  2  0  0  0  0
 61 38  1  0  0  0  0
 62 39  2  0  0  0  0
 63 39  1  0  0  0  0
 65 22  1  0  0  0  0
 24 66  1  1  0  0  0
 25 67  1  1  0  0  0
M  CHG  8  44  -1  46  -1  49  -1  51  -1  53  -1  55  -1  57  -1  59  -1
M  CHG  3  61  -1  63  -1  64   2
M  END
> <DATABASE_ID>
MMDBc0055813

> <DATABASE_NAME>
MIME

> <SMILES>
[Co++].[H]C1(CC([O-])=O)C2=CC3=NC(=CC4=N\C(=C(C)/C5=C(CC([O-])=O)C(CCC([O-])=O)=C(CC([N-]2)=C1CCC([O-])=O)[N-]5)[C@@](C)(CC([O-])=O)[C@]4([H])CCC([O-])=O)[C@@](C)(CC([O-])=O)[C@]3([H])CCC([O-])=O

> <INCHI_IDENTIFIER>
InChI=1S/C43H49N4O16.Co/c1-19-40-23(13-37(58)59)21(5-9-33(50)51)27(46-40)14-26-20(4-8-32(48)49)22(12-36(56)57)28(44-26)15-29-24(6-10-34(52)53)42(2,17-38(60)61)31(45-29)16-30-25(7-11-35(54)55)43(3,18-39(62)63)41(19)47-30;/h15-16,22,24-25H,4-14,17-18H2,1-3H3,(H9,44,45,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63);/q-1;+2/p-9/b41-19-;/t22?,24-,25-,42+,43+;/m1./s1

> <INCHI_KEY>
FKTVLCPLZMVWHD-LPFAUARPSA-E

> <FORMULA>
C43H40CoN4O16

> <MOLECULAR_WEIGHT>
927.743

> <EXACT_MASS>
927.181514

> <JCHEM_ACCEPTOR_COUNT>
20

> <JCHEM_ATOM_COUNT>
104

> <JCHEM_AVERAGE_POLARIZABILITY>
85.03944031403685

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
-8

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
lambda2-cobalt(2+) ion (4S,5S,9S,10S)-4,9,15,19-tetrakis(2-carboxyethyl)-5,10,14,20-tetrakis(carboxymethyl)-5,10,12-trimethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1^{3,6}.1^{8,11}.1^{13,16}]tetracosa-1,3(24),6,8(23),11,13,15,18-octaene-21,22-diide

> <JCHEM_LOGP>
0.6528494300000027

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-6

> <JCHEM_PKA>
3.5924682514028246

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.2213915327505105

> <JCHEM_POLAR_SURFACE_AREA>
367.88

> <JCHEM_REFRACTIVITY>
308.0691

> <JCHEM_ROTATABLE_BOND_COUNT>
20

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
lambda2-cobalt(2+) ion (4S,5S,9S,10S)-4,9,15,19-tetrakis(2-carboxyethyl)-5,10,14,20-tetrakis(carboxymethyl)-5,10,12-trimethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1^{3,6}.1^{8,11}.1^{13,16}]tetracosa-1,3(24),6,8(23),11,13,15,18-octaene-21,22-diide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUN-22         0                                  
HETATM    1  C   UNK     0       6.561   0.114   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.745   9.966   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.483   1.986   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      16.381   2.467   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.295   2.828   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      11.867  10.737   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.657   6.296   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      17.994   2.168   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      11.764   4.551   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      13.322  11.676   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.935   7.820   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      16.663   5.748   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.180   3.610   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      12.557   1.300   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      12.936   6.869   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.367   7.248   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.010  11.144   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.136   3.182   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.988   1.679   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      15.027   3.422   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      10.846   2.027   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      15.131   4.959   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       9.309   2.132   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      10.813   9.339   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.897   5.126   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      13.533   3.047   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      11.221   0.533   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      13.282   5.647   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      11.189   7.845   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       6.390   5.501   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       8.703   8.015   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      19.392   1.331   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      12.338   6.157   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      14.490  12.808   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       1.825   8.999   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      17.813   6.985   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       8.097   5.149   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       8.136  12.598   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       1.778   2.188   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       8.735   0.703   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       6.221   3.015   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       9.277   9.444   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       4.792   3.589   0.000  0.00  0.00           C+0
HETATM   44  N   UNK     0      12.715   4.352   0.000  0.00  0.00           N-1
HETATM   45  N   UNK     0       9.884   7.027   0.000  0.00  0.00           N+0
HETATM   46  N   UNK     0       9.916  -0.285   0.000  0.00  0.00           N-1
HETATM   47  N   UNK     0       7.209   4.196   0.000  0.00  0.00           N+0
HETATM   48  O   UNK     0      19.285  -0.243   0.000  0.00  0.00           O+0
HETATM   49  O   UNK     0      20.867   1.928   0.000  0.00  0.00           O-1
HETATM   50  O   UNK     0      14.113   6.528   0.000  0.00  0.00           O+0
HETATM   51  O   UNK     0      12.493   7.908   0.000  0.00  0.00           O-1
HETATM   52  O   UNK     0      14.322  14.375   0.000  0.00  0.00           O+0
HETATM   53  O   UNK     0      16.113  12.860   0.000  0.00  0.00           O-1
HETATM   54  O   UNK     0       1.915  10.593   0.000  0.00  0.00           O+0
HETATM   55  O   UNK     0       0.263   8.793   0.000  0.00  0.00           O-1
HETATM   56  O   UNK     0      17.512   8.563   0.000  0.00  0.00           O+0
HETATM   57  O   UNK     0      19.211   7.748   0.000  0.00  0.00           O-1
HETATM   58  O   UNK     0       6.960   6.408   0.000  0.00  0.00           O+0
HETATM   59  O   UNK     0       9.570   5.514   0.000  0.00  0.00           O-1
HETATM   60  O   UNK     0       6.618  13.097   0.000  0.00  0.00           O+0
HETATM   61  O   UNK     0       8.439  14.183   0.000  0.00  0.00           O-1
HETATM   62  O   UNK     0       1.388   0.630   0.000  0.00  0.00           O+0
HETATM   63  O   UNK     0       0.197   2.498   0.000  0.00  0.00           O-1
HETATM   64 Co   UNK     0      22.099   2.872   0.000  0.00  0.00          Co+2
HETATM   65  H   UNK     0      15.039   6.496   0.000  0.00  0.00           H+0
HETATM   66  H   UNK     0      12.323   9.033   0.000  0.00  0.00           H+0
HETATM   67  H   UNK     0       5.286   6.616   0.000  0.00  0.00           H+0
CONECT    1   19                                                            
CONECT    2   42                                                            
CONECT    3   43                                                            
CONECT    4    8   20                                                       
CONECT    5    9   21                                                       
CONECT    6   10   24                                                       
CONECT    7   11   25                                                       
CONECT    8    4   32                                                       
CONECT    9    5   33                                                       
CONECT   10    6   34                                                       
CONECT   11    7   35                                                       
CONECT   12   22   36                                                       
CONECT   13   23   37                                                       
CONECT   14   26   27                                                       
CONECT   15   28   29                                                       
CONECT   16   30   31                                                       
CONECT   17   38   42                                                       
CONECT   18   39   43                                                       
CONECT   19    1   40   41                                                  
CONECT   20    4   22   26                                                  
CONECT   21    5   23   27                                                  
CONECT   22   12   20   28   65                                             
CONECT   23   13   21   40                                                  
CONECT   24    6   29   42   66                                             
CONECT   25    7   30   43   67                                             
CONECT   26   14   20   44                                                  
CONECT   27   14   21   46                                                  
CONECT   28   15   22   44                                                  
CONECT   29   15   24   45                                                  
CONECT   30   16   25   47                                                  
CONECT   31   16   42   45                                                  
CONECT   32    8   48   49                                                  
CONECT   33    9   50   51                                                  
CONECT   34   10   52   53                                                  
CONECT   35   11   54   55                                                  
CONECT   36   12   56   57                                                  
CONECT   37   13   58   59                                                  
CONECT   38   17   60   61                                                  
CONECT   39   18   62   63                                                  
CONECT   40   19   23   46                                                  
CONECT   41   19   43   47                                                  
CONECT   42    2   17   24   31                                             
CONECT   43    3   18   25   41                                             
CONECT   44   26   28                                                       
CONECT   45   29   31                                                       
CONECT   46   27   40                                                       
CONECT   47   30   41                                                       
CONECT   48   32                                                            
CONECT   49   32                                                            
CONECT   50   33                                                            
CONECT   51   33                                                            
CONECT   52   34                                                            
CONECT   53   34                                                            
CONECT   54   35                                                            
CONECT   55   35                                                            
CONECT   56   36                                                            
CONECT   57   36                                                            
CONECT   58   37                                                            
CONECT   59   37                                                            
CONECT   60   38                                                            
CONECT   61   38                                                            
CONECT   62   39                                                            
CONECT   63   39                                                            
CONECT   65   22                                                            
CONECT   66   24                                                            
CONECT   67   25                                                            
MASTER        0    0    0    0    0    0    0    0   67    0  140    0
END

Synonyms

Value	Source
CO-Precorrin-3	ChEBI

Molecular Formula

C₄₃H₄₀CoN₄O₁₆

Average Mass

927.743

Monoisotopic Mass

927.181514

IUPAC Name

lambda2-cobalt(2+) ion (4S,5S,9S,10S)-4,9,15,19-tetrakis(2-carboxyethyl)-5,10,14,20-tetrakis(carboxymethyl)-5,10,12-trimethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1^{3,6}.1^{8,11}.1^{13,16}]tetracosa-1,3(24),6,8(23),11,13,15,18-octaene-21,22-diide

Traditional Name

CAS Registry Number

Not Available

SMILES

[Co++].[H]C1(CC([O-])=O)C2=CC3=NC(=CC4=N\C(=C(C)/C5=C(CC([O-])=O)C(CCC([O-])=O)=C(CC([N-]2)=C1CCC([O-])=O)[N-]5)[C@@](C)(CC([O-])=O)[C@]4([H])CCC([O-])=O)[C@@](C)(CC([O-])=O)[C@]3([H])CCC([O-])=O

InChI Identifier

InChI=1S/C43H49N4O16.Co/c1-19-40-23(13-37(58)59)21(5-9-33(50)51)27(46-40)14-26-20(4-8-32(48)49)22(12-36(56)57)28(44-26)15-29-24(6-10-34(52)53)42(2,17-38(60)61)31(45-29)16-30-25(7-11-35(54)55)43(3,18-39(62)63)41(19)47-30;/h15-16,22,24-25H,4-14,17-18H2,1-3H3,(H9,44,45,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63);/q-1;+2/p-9/b41-19-;/t22?,24-,25-,42+,43+;/m1./s1

InChI Key

FKTVLCPLZMVWHD-LPFAUARPSA-E

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as metallotetrapyrroles. These are polycyclic compounds containing a tetrapyrrole skeleton combined with a metal atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Tetrapyrroles and derivatives

Sub Class

Metallotetrapyrroles

Direct Parent

Metallotetrapyrroles

Alternative Parents

Substituents

Metallotetrapyrrole skeleton
Substituted pyrrole
Pyrrole
Pyrroline
Heteroaromatic compound
Carboxylic acid salt
Ketimine
Organic transition metal salt
Azacycle
Carboxylic acid derivative
Carbene-type 1,3-dipolar compound
Carboxylic acid
Hydrocarbon derivative
Organic cobalt salt
Organic oxide
Organopnictogen compound
Organic oxygen compound
Organooxygen compound
Organonitrogen compound
Organic nitrogen compound
Carbonyl group
Imine
Organic salt
Organic anion
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

precorrin carboxylic acid anion (CHEBI:60060 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
logP	0.65	ChemAxon
pKa (Strongest Acidic)	3.22	ChemAxon
Physiological Charge	-6	ChemAxon
Hydrogen Acceptor Count	20	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	367.88 Å²	ChemAxon
Rotatable Bond Count	20	ChemAxon
Refractivity	308.07 m³·mol⁻¹	ChemAxon
Polarizability	85.04 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Spectra

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Not Available

Retention Indices

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Archaea/Archaea	Euryarchaeota	1
Bacteria/Eubacteria	Proteobacteria	1	Human

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

28532753

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

46878566

PDB ID

Not Available

ChEBI ID

60060

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for Co-precorrin-3 (MMDBc0055813)

MOL for #<Metabolite:0x00007fae00863f98>

3D MOL for #<Metabolite:0x00007fae00863f98>

3D SDF for #<Metabolite:0x00007fae00863f98>

3D-SDF for #<Metabolite:0x00007fae00863f98>

PDB for #<Metabolite:0x00007fae00863f98>

3D PDB for #<Metabolite:0x00007fae00863f98>

SMILES for #<Metabolite:0x00007fae00863f98>

INCHI for #<Metabolite:0x00007fae00863f98>

Structure for #<Metabolite:0x00007fae00863f98>

3D Structure for #<Metabolite:0x00007fae00863f98>