| MMDBm0000003 | Acidaminococcus fermentans DSM 20731 | Eubacteria | Firmicutes | Pig | Microbial culture | CMMC-Kb |
| MMDBm0000014 | Akkermansia muciniphila | Eubacteria | Verrucomicrobia | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000015 | Akkermansia muciniphila ATCC BAA-835 | Eubacteria | Verrucomicrobia | Human | Microbial culture | CMMC-Kb |
| MMDBm0000018 | Alistipes finegoldii DSM 17242 | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000021 | Anaerostipes caccae | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000031 | Bacillus subtilis | Eubacteria | Firmicutes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000044 | Bacteroides fragilis 3_1_12 | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000046 | Bacteroides fragilis NCTC 9343 | Eubacteria | Bacteroidetes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000051 | Bacteroides salanitronis DSM 18170 | Eubacteria | Bacteroidetes | Chicken | Microbial culture | CMMC-Kb |
| MMDBm0000053 | Bacteroides stercoris ATCC 43183 | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000054 | Bacteroides thetaiotaomicron | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000055 | Bacteroides thetaiotaomicron VPI-5482 | Eubacteria | Bacteroidetes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000056 | Bacteroides vulgatus | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000057 | Bacteroides vulgatus ATCC 8482 | Eubacteria | Bacteroidetes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000092 | Blautia hansenii DSM 20583 | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000132 | Clostridium perfringens ATCC 13124 | Eubacteria | Firmicutes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000134 | Clostridium saccharolyticum | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000141 | Collinsella aerofaciens | Eubacteria | Actinobacteria | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000147 | Dorea formicigenerans ATCC 27755 | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000149 | Eggerthella lenta | Eubacteria | Actinobacteria | Human | Microbial culture | CMMC-Kb |
| MMDBm0000173 | Eubacterium rectale ATCC 33656 | Eubacteria | Firmicutes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000179 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000191 | Intestinimonas butyriciproducens | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000208 | Lactobacillus rhamnosus ATCC 8530 | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000223 | Odoribacter splanchnicus DSM 20712 | Eubacteria | Bacteroidetes | Human | Microbial culture | CMMC-Kb |