Microbe Identification
Microbe nameEscherichia coli
NCBI Taxonomy ID562
DescriptionEscherichia coli, a ubiquitous and well-studied microorganism, belongs to the family Enterobacteriaceae. This gram-negative, rod-shaped bacterium thrives in temperatures ranging from 7°C to 50°C, making it a mesophilic microbe. Its metabolism is heterotrophic, relying on organic compounds for energy and growth. E. coli is a chemoheterotroph, utilizing carbon-rich molecules as its energy source. This microbe produces energy through the process of cellular respiration, where it converts glucose into ATP. The E. coli genome has been extensively sequenced, revealing a single circular chromosome of approximately 4.6 million base pairs. The gram-negative staining pattern of E. coli is characterized by a thin peptidoglycan layer, which is surrounded by an outer membrane containing lipopolysaccharides. E. coli typically appears as a straight or slightly curved rod, measuring 2-4 μm in length and 0.5-1 μm in width. It has been isolated from various body sites in all possible species, including the human gut, urinary tract, and bloodstream. Oxygen preference for E. coli is facultative anaerobic, meaning it can grow in both aerobic and anaerobic environments, but prefers aerobic conditions. In hosts, E. coli plays a crucial role in the human gut microbiome, aiding in nutrient absorption and immune system development. In the environment, E. coli can contaminate food and water, causing gastrointestinal illnesses in humans. Despite its potential pathogenicity, E. coli has also been engineered for biotechnological applications, such as the production of recombinant proteins and biofuels. Furthermore, studies on E. coli have led to a deeper understanding of bacterial physiology, genetic regulation, and molecular biology, making it a valuable model organism in scientific research.
Microbe Taxonomy
SuperkingdomBacteria
KingdomEubacteria
PhylumProteobacteria
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
Species coli
Microbe Properties
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Oxygen preferenceFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Cell arrangementPairs - Singles
SporulationPairs - Singles
MetabolismNot Available
Energy sourceNot Available
Host and Biospecimens
HostBody siteBiospecimenData SourceReference
HumanHuman Oral Microbiome Database (HOMD)20624719
HumanGutFecesGutFeeling KnowledgeBase31509535
HumanLarge intestineFeces; Pleural fluid plaque; BALBacDivePMID: 34718743
HumanLower respiratory tractFeces; Pleural fluid plaque; BALBacDivePMID: 34718743
HumanFecesHuman Microbiome Project28953883
HumanLarge intestineBacDive34718743
HumanLungBacDive34718743
HumanLower respiratory tractBacDive34718743
HumanBronchiBacDive34718743
HumanFornixBacDive34718743
HumanVaginaBacDive34718743
HumanDuodenumDisbiome25865706
HumanLarge intestineFecesDisbiome29782468