MiMeDB: Showing metabocard for Cytidine 3'-monophosphate (MMDBc0000720)

Microbial

Pharmaceutical

Xenobiotic

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2020-12-10 18:53:29 UTC

Update Date

2024-10-13 11:21:23 UTC

Metabolite ID

MMDBc0000720

Metabolite Identification

Common Name

Cytidine 3'-monophosphate

Description

Cytidine 3'-monophosphate (3'-CMP), also known as 3'-cytidylic acid or 3'-cytidylate, belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups. Cytidine 3'-monophosphate has been identified in the human placenta (PMID: 32033212 ).

Structure

MOL SDF PDB SMILES InChI

Synonyms

Not Available

Molecular Formula

C₉H₁₄N₃O₈P

Average Mass

323.1965

Monoisotopic Mass

323.051850951

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

Not Available

InChI Identifier

InChI=1S/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-6(14)7(4(3-13)19-8)20-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H2,10,11,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1

InChI Key

UOOOPKANIPLQPU-XVFCMESISA-N

Chemical Taxonomy

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Not Available

Spectra

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-23	509.4
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	383.0
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (void)	2025-10-23	46.1
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	243.7
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	319.4
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-23	239.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	380.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	895.5
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	537.8
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	146.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	564.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	159.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	41.6
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	399.4
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	834.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (void)	2025-10-23	55.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	245.7
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	568.1
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	521.0

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	Cytidine 3'-monophosphate_TMS_1	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N)=NC2=O)[C@H](O)[C@@H]1OP(=O)(O)O	standard non polar	2025-10-23	2137.21
Gas Chromatography	Cytidine 3'-monophosphate_TMS_2	C[Si](C)(C)O[C@@H]1[C@H](OP(=O)(O)O)[C@@H](CO)O[C@H]1N1C=CC(N)=NC1=O	standard non polar	2025-10-23	2649.45
Gas Chromatography	Cytidine 3'-monophosphate_TMS_3	C[Si](C)(C)OP(=O)(O)O[C@@H]1[C@@H](CO)O[C@@H](N2C=CC(N)=NC2=O)[C@@H]1O	standard non polar	2025-10-23	1940.0
Gas Chromatography	Cytidine 3'-monophosphate_TMS_4	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O)O)[C@H]2O)C=C1	standard non polar	2025-10-23	1533.46
Gas Chromatography	Cytidine 3'-monophosphate_TMS_5	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N)=NC2=O)[C@H](O[Si](C)(C)C)[C@@H]1OP(=O)(O)O	standard non polar	2025-10-23	2902.66
Gas Chromatography	Cytidine 3'-monophosphate_TMS_6	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N)=NC2=O)[C@H](O)[C@@H]1OP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	978.92
Gas Chromatography	Cytidine 3'-monophosphate_TMS_7	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO[Si](C)(C)C)[C@@H](OP(=O)(O)O)[C@H]2O)C=C1	standard non polar	2025-10-23	3159.35
Gas Chromatography	Cytidine 3'-monophosphate_TMS_8	C[Si](C)(C)O[C@@H]1[C@H](OP(=O)(O)O[Si](C)(C)C)[C@@H](CO)O[C@H]1N1C=CC(N)=NC1=O	standard non polar	2025-10-23	1841.82
Gas Chromatography	Cytidine 3'-monophosphate_TMS_9	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O)O)[C@H]2O[Si](C)(C)C)C=C1	standard non polar	2025-10-23	1654.13
Gas Chromatography	Cytidine 3'-monophosphate_TMS_10	C[Si](C)(C)OP(=O)(O[C@@H]1[C@@H](CO)O[C@@H](N2C=CC(N)=NC2=O)[C@@H]1O)O[Si](C)(C)C	standard non polar	2025-10-23	1575.03
Gas Chromatography	Cytidine 3'-monophosphate_TMS_11	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O)O[Si](C)(C)C)[C@H]2O)C=C1	standard non polar	2025-10-23	2304.8
Gas Chromatography	Cytidine 3'-monophosphate_TMS_12	C[Si](C)(C)N(C1=NC(=O)N([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O)O)[C@H]2O)C=C1)[Si](C)(C)C	standard non polar	2025-10-23	3079.3
Gas Chromatography	Cytidine 3'-monophosphate_TMS_13	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N)=NC2=O)[C@H](O[Si](C)(C)C)[C@@H]1OP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	2860.57
Gas Chromatography	Cytidine 3'-monophosphate_TMS_14	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO[Si](C)(C)C)[C@@H](OP(=O)(O)O)[C@H]2O[Si](C)(C)C)C=C1	standard non polar	2025-10-23	2595.15
Gas Chromatography	Cytidine 3'-monophosphate_TMS_15	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N)=NC2=O)[C@H](O)[C@@H]1OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2099.4
Gas Chromatography	Cytidine 3'-monophosphate_TMS_16	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO[Si](C)(C)C)[C@@H](OP(=O)(O)O[Si](C)(C)C)[C@H]2O)C=C1	standard non polar	2025-10-23	1634.62
Gas Chromatography	Cytidine 3'-monophosphate_TMS_17	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@H](O)[C@@H]1OP(=O)(O)O	standard non polar	2025-10-23	2566.8
Gas Chromatography	Cytidine 3'-monophosphate_TMS_18	C[Si](C)(C)O[C@@H]1[C@H](OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@@H](CO)O[C@H]1N1C=CC(N)=NC1=O	standard non polar	2025-10-23	2122.1
Gas Chromatography	Cytidine 3'-monophosphate_TMS_19	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O)O[Si](C)(C)C)[C@H]2O[Si](C)(C)C)C=C1	standard non polar	2025-10-23	1667.35
Gas Chromatography	Cytidine 3'-monophosphate_TMS_20	C[Si](C)(C)O[C@@H]1[C@H](OP(=O)(O)O)[C@@H](CO)O[C@H]1N1C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC1=O	standard non polar	2025-10-23	1599.34
Gas Chromatography	Cytidine 3'-monophosphate_TMS_21	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]2O)C=C1	standard non polar	2025-10-23	1179.22
Gas Chromatography	Cytidine 3'-monophosphate_TMS_22	C[Si](C)(C)OP(=O)(O)O[C@@H]1[C@@H](CO)O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@@H]1O	standard non polar	2025-10-23	1869.0
Gas Chromatography	Cytidine 3'-monophosphate_TMS_23	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N)=NC2=O)[C@H](O[Si](C)(C)C)[C@@H]1OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2461.27
Gas Chromatography	Cytidine 3'-monophosphate_TMS_24	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO[Si](C)(C)C)[C@@H](OP(=O)(O)O[Si](C)(C)C)[C@H]2O[Si](C)(C)C)C=C1	standard non polar	2025-10-23	1476.08
Gas Chromatography	Cytidine 3'-monophosphate_TMS_25	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@H](O[Si](C)(C)C)[C@@H]1OP(=O)(O)O	standard non polar	2025-10-23	2709.5
Gas Chromatography	Cytidine 3'-monophosphate_TMS_26	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO[Si](C)(C)C)[C@@H](OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]2O)C=C1	standard non polar	2025-10-23	1837.62
Gas Chromatography	Cytidine 3'-monophosphate_TMS_27	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@H](O)[C@@H]1OP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	2548.51
Gas Chromatography	Cytidine 3'-monophosphate_TMS_28	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]2O[Si](C)(C)C)C=C1	standard non polar	2025-10-23	2568.83
Gas Chromatography	Cytidine 3'-monophosphate_TMS_29	C[Si](C)(C)O[C@@H]1[C@H](OP(=O)(O)O[Si](C)(C)C)[C@@H](CO)O[C@H]1N1C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC1=O	standard non polar	2025-10-23	2663.88
Gas Chromatography	Cytidine 3'-monophosphate_TMS_30	C[Si](C)(C)OP(=O)(O[C@@H]1[C@@H](CO)O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@@H]1O)O[Si](C)(C)C	standard non polar	2025-10-23	2149.81
Gas Chromatography	Cytidine 3'-monophosphate_TMS_31	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO[Si](C)(C)C)[C@@H](OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]2O[Si](C)(C)C)C=C1	standard non polar	2025-10-23	2569.92
Gas Chromatography	Cytidine 3'-monophosphate_TMS_32	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@H](O[Si](C)(C)C)[C@@H]1OP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	1325.99
Gas Chromatography	Cytidine 3'-monophosphate_TMS_33	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@H](O)[C@@H]1OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2151.55
Gas Chromatography	Cytidine 3'-monophosphate_TMS_34	C[Si](C)(C)O[C@@H]1[C@H](OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@@H](CO)O[C@H]1N1C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC1=O	standard non polar	2025-10-23	1669.0
Gas Chromatography	Cytidine 3'-monophosphate_TMS_35	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@H](O[Si](C)(C)C)[C@@H]1OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1125.46
Gas Chromatography	Cytidine 3'-monophosphate_TMS_1	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N)=NC2=O)[C@H](O)[C@@H]1OP(=O)(O)O	standard polar	2025-10-23	1805.18
Gas Chromatography	Cytidine 3'-monophosphate_TMS_2	C[Si](C)(C)O[C@@H]1[C@H](OP(=O)(O)O)[C@@H](CO)O[C@H]1N1C=CC(N)=NC1=O	standard polar	2025-10-23	1722.04
Gas Chromatography	Cytidine 3'-monophosphate_TMS_3	C[Si](C)(C)OP(=O)(O)O[C@@H]1[C@@H](CO)O[C@@H](N2C=CC(N)=NC2=O)[C@@H]1O	standard polar	2025-10-23	2269.36
Gas Chromatography	Cytidine 3'-monophosphate_TMS_4	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O)O)[C@H]2O)C=C1	standard polar	2025-10-23	2129.24
Gas Chromatography	Cytidine 3'-monophosphate_TMS_5	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N)=NC2=O)[C@H](O[Si](C)(C)C)[C@@H]1OP(=O)(O)O	standard polar	2025-10-23	2640.08
Gas Chromatography	Cytidine 3'-monophosphate_TMS_6	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N)=NC2=O)[C@H](O)[C@@H]1OP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	2542.88
Gas Chromatography	Cytidine 3'-monophosphate_TMS_7	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO[Si](C)(C)C)[C@@H](OP(=O)(O)O)[C@H]2O)C=C1	standard polar	2025-10-23	2317.23
Gas Chromatography	Cytidine 3'-monophosphate_TMS_8	C[Si](C)(C)O[C@@H]1[C@H](OP(=O)(O)O[Si](C)(C)C)[C@@H](CO)O[C@H]1N1C=CC(N)=NC1=O	standard polar	2025-10-23	1794.55
Gas Chromatography	Cytidine 3'-monophosphate_TMS_9	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O)O)[C@H]2O[Si](C)(C)C)C=C1	standard polar	2025-10-23	1871.31
Gas Chromatography	Cytidine 3'-monophosphate_TMS_10	C[Si](C)(C)OP(=O)(O[C@@H]1[C@@H](CO)O[C@@H](N2C=CC(N)=NC2=O)[C@@H]1O)O[Si](C)(C)C	standard polar	2025-10-23	2656.76
Gas Chromatography	Cytidine 3'-monophosphate_TMS_11	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O)O[Si](C)(C)C)[C@H]2O)C=C1	standard polar	2025-10-23	2435.74
Gas Chromatography	Cytidine 3'-monophosphate_TMS_12	C[Si](C)(C)N(C1=NC(=O)N([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O)O)[C@H]2O)C=C1)[Si](C)(C)C	standard polar	2025-10-23	2102.29
Gas Chromatography	Cytidine 3'-monophosphate_TMS_13	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N)=NC2=O)[C@H](O[Si](C)(C)C)[C@@H]1OP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	2920.68
Gas Chromatography	Cytidine 3'-monophosphate_TMS_14	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO[Si](C)(C)C)[C@@H](OP(=O)(O)O)[C@H]2O[Si](C)(C)C)C=C1	standard polar	2025-10-23	1911.76
Gas Chromatography	Cytidine 3'-monophosphate_TMS_15	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N)=NC2=O)[C@H](O)[C@@H]1OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1832.98
Gas Chromatography	Cytidine 3'-monophosphate_TMS_16	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO[Si](C)(C)C)[C@@H](OP(=O)(O)O[Si](C)(C)C)[C@H]2O)C=C1	standard polar	2025-10-23	1700.29
Gas Chromatography	Cytidine 3'-monophosphate_TMS_17	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@H](O)[C@@H]1OP(=O)(O)O	standard polar	2025-10-23	2312.07
Gas Chromatography	Cytidine 3'-monophosphate_TMS_18	C[Si](C)(C)O[C@@H]1[C@H](OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@@H](CO)O[C@H]1N1C=CC(N)=NC1=O	standard polar	2025-10-23	2534.32
Gas Chromatography	Cytidine 3'-monophosphate_TMS_19	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O)O[Si](C)(C)C)[C@H]2O[Si](C)(C)C)C=C1	standard polar	2025-10-23	2624.07
Gas Chromatography	Cytidine 3'-monophosphate_TMS_20	C[Si](C)(C)O[C@@H]1[C@H](OP(=O)(O)O)[C@@H](CO)O[C@H]1N1C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC1=O	standard polar	2025-10-23	2686.17
Gas Chromatography	Cytidine 3'-monophosphate_TMS_21	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]2O)C=C1	standard polar	2025-10-23	385.051
Gas Chromatography	Cytidine 3'-monophosphate_TMS_22	C[Si](C)(C)OP(=O)(O)O[C@@H]1[C@@H](CO)O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@@H]1O	standard polar	2025-10-23	2437.8
Gas Chromatography	Cytidine 3'-monophosphate_TMS_23	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N)=NC2=O)[C@H](O[Si](C)(C)C)[C@@H]1OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2738.51
Gas Chromatography	Cytidine 3'-monophosphate_TMS_24	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO[Si](C)(C)C)[C@@H](OP(=O)(O)O[Si](C)(C)C)[C@H]2O[Si](C)(C)C)C=C1	standard polar	2025-10-23	2884.63
Gas Chromatography	Cytidine 3'-monophosphate_TMS_25	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@H](O[Si](C)(C)C)[C@@H]1OP(=O)(O)O	standard polar	2025-10-23	2407.82
Gas Chromatography	Cytidine 3'-monophosphate_TMS_26	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO[Si](C)(C)C)[C@@H](OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]2O)C=C1	standard polar	2025-10-23	935.374
Gas Chromatography	Cytidine 3'-monophosphate_TMS_27	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@H](O)[C@@H]1OP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	1417.68
Gas Chromatography	Cytidine 3'-monophosphate_TMS_28	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO)[C@@H](OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]2O[Si](C)(C)C)C=C1	standard polar	2025-10-23	2598.05
Gas Chromatography	Cytidine 3'-monophosphate_TMS_29	C[Si](C)(C)O[C@@H]1[C@H](OP(=O)(O)O[Si](C)(C)C)[C@@H](CO)O[C@H]1N1C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC1=O	standard polar	2025-10-23	2642.49
Gas Chromatography	Cytidine 3'-monophosphate_TMS_30	C[Si](C)(C)OP(=O)(O[C@@H]1[C@@H](CO)O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@@H]1O)O[Si](C)(C)C	standard polar	2025-10-23	2754.02
Gas Chromatography	Cytidine 3'-monophosphate_TMS_31	C[Si](C)(C)NC1=NC(=O)N([C@@H]2O[C@H](CO[Si](C)(C)C)[C@@H](OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H]2O[Si](C)(C)C)C=C1	standard polar	2025-10-23	2053.86
Gas Chromatography	Cytidine 3'-monophosphate_TMS_32	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@H](O[Si](C)(C)C)[C@@H]1OP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	1370.57
Gas Chromatography	Cytidine 3'-monophosphate_TMS_33	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@H](O)[C@@H]1OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	3376.5
Gas Chromatography	Cytidine 3'-monophosphate_TMS_34	C[Si](C)(C)O[C@@H]1[C@H](OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@@H](CO)O[C@H]1N1C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC1=O	standard polar	2025-10-23	1712.58
Gas Chromatography	Cytidine 3'-monophosphate_TMS_35	C[Si](C)(C)OC[C@H]1O[C@@H](N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)[C@H](O[Si](C)(C)C)[C@@H]1OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1661.72

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Feces
Placenta

Tissue Locations

Placenta

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0026010	Cytidine 3'-monophosphate	Cytidine	5'/3'-nucleotidase SurE	Hydrolysis of nucleotide	RHEA	34755880
MMDBr0026050	Cytidine 2',3'-cyclic phosphate	Cytidine 3'-monophosphate	2',3'-cyclic-nucleotide 2'-phosphodiesterase	Hydrolysis of nucleotide; Dephosphorylation	RHEA	34755880

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Bacteroidetes	1	Human ; Human feces	Indirect association between microbiota composition and metabolites measured in host biospecimen
Bacteria/Eubacteria	Firmicutes	1	Human feces	Indirect association between microbiota composition and metabolites measured in host biospecimen

Exposure Sources

Other Exposures

Source Type	Data Source	Reference
Drugs - Antimicrobial	U.S. Environmental Protection Agency	CompTox
Cosmetics	U.S. Environmental Protection Agency	CompTox
Domestics	U.S. Environmental Protection Agency	CompTox

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Placenta	Detected but not Quantified						Not Specified	Not Specified	Normal	HMDB	34986597
Human Feces	Detected but not Quantified						Adult (>18 years old)	Both	Normal	HMDB	29808030

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Elshenawy S, Pinney SE, Stuart T, Doulias PT, Zura G, Parry S, Elovitz MA, Bennett MJ, Bansal A, Strauss JF 3rd, Ischiropoulos H, Simmons RA: The Metabolomic Signature of the Placenta in Spontaneous Preterm Birth. Int J Mol Sci. 2020 Feb 4;21(3). pii: ijms21031043. doi: 10.3390/ijms21031043. [PubMed:32033212 ]

Showing metabocard for Cytidine 3'-monophosphate (MMDBc0000720)

MOL for #<Metabolite:0x00007f9af39197f0>

3D MOL for #<Metabolite:0x00007f9af39197f0>

3D SDF for #<Metabolite:0x00007f9af39197f0>

3D-SDF for #<Metabolite:0x00007f9af39197f0>

PDB for #<Metabolite:0x00007f9af39197f0>

3D PDB for #<Metabolite:0x00007f9af39197f0>

SMILES for #<Metabolite:0x00007f9af39197f0>

INCHI for #<Metabolite:0x00007f9af39197f0>

Structure for #<Metabolite:0x00007f9af39197f0>

3D Structure for #<Metabolite:0x00007f9af39197f0>