MiMeDB: Showing metabocard for PGP(10:0/10:0(3-OH)) (MMDBc0032343)

Microbial

Human

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-18 02:12:32 UTC

Update Date

2022-08-31 18:40:53 UTC

Metabolite ID

MMDBc0032343

Metabolite Identification

Common Name

PGP(10:0/10:0(3-OH))

Description

PGP(10:0/10:0(3-OH)) belongs to the class of glycerophosphoglycerophosphates, also called phosphatidylglycerophosphates (PGPs). These lipids contain a common glycerophosphate skeleton linked to at least one fatty acyl chain and a glycero-3-phosphate moiety. As is the case with diacylglycerols, phosphatidylglycerophosphates can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions. PGP(10:0/10:0(3-OH)), in particular, consists of one decanoyl chain to the C-1 atom, and one 3-hydroxydecanoyl to the C-2 atom. In E. coli, PGPs can be found in the cytoplasmic membrane. The are synthesized by the addition of glycerol 3-phosphate to a CDP-diacylglycerol. In turn, PGPs are dephosphorylated to Phosphatidylglycerols (PGs) by the enzyme Phosphatidylglycerophosphatase.

Structure

MOL SDF PDB SMILES InChI


  Mrv1572012091519042D          

 44 43  0  0  1  0            999 V2000
    2.7850    0.9634    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3818    0.3608    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0919    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8022    0.3608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9714   -0.3494    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7924   -0.3494    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6715    0.7708    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9613    0.3608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7968    0.3437    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5071   -0.0665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2174    0.3437    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9276   -0.0665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0493    0.6481    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3125    0.0209    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0493    1.3958    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8811    0.9262    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6379    0.3434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4301    0.5557    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    4.4301    1.3759    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2224    0.3434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0201   -0.1546    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5123    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5123    1.5410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2264    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9405    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6546    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3688    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0830    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7971    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5112    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2254    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9395    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5362   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5362   -1.5406    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2504   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9645   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9645   -1.5406    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6787   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3928   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1069   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8211   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5352   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2493   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9635   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  2  5  1  1  0  0  0
  6  2  1  0  0  0  0
  7  2  1  0  0  0  0
  8  7  1  0  0  0  0
 10  9  1  0  0  0  0
 11  1  1  1  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 13  8  1  0  0  0  0
 13  9  1  0  0  0  0
 14 13  1  0  0  0  0
 15 13  2  0  0  0  0
 11 16  1  6  0  0  0
 17 12  1  0  0  0  0
 18 17  1  0  0  0  0
 19 18  2  0  0  0  0
 20 18  1  0  0  0  0
 21 18  1  0  0  0  0
 22  4  1  0  0  0  0
 23 22  2  0  0  0  0
 24 22  1  0  0  0  0
 25 24  1  0  0  0  0
 26 25  1  0  0  0  0
 27 26  1  0  0  0  0
 28 27  1  0  0  0  0
 29 28  1  0  0  0  0
 30 29  1  0  0  0  0
 31 30  1  0  0  0  0
 32 31  1  0  0  0  0
 33  6  1  0  0  0  0
 34 33  2  0  0  0  0
 35 33  1  0  0  0  0
 36 35  1  0  0  0  0
 37 36  1  0  0  0  0
 38 36  1  0  0  0  0
 39 38  1  0  0  0  0
 40 39  1  0  0  0  0
 41 40  1  0  0  0  0
 42 41  1  0  0  0  0
 43 42  1  0  0  0  0
 44 43  1  0  0  0  0
M  END


  Mrv1572012091519042D          

 44 43  0  0  1  0            999 V2000
    2.7850    0.9634    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3818    0.3608    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0919    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8022    0.3608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9714   -0.3494    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7924   -0.3494    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6715    0.7708    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9613    0.3608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7968    0.3437    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5071   -0.0665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2174    0.3437    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9276   -0.0665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0493    0.6481    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3125    0.0209    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0493    1.3958    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8811    0.9262    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6379    0.3434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4301    0.5557    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    4.4301    1.3759    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2224    0.3434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0201   -0.1546    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5123    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5123    1.5410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2264    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9405    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6546    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3688    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0830    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7971    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5112    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2254    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9395    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5362   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5362   -1.5406    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2504   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9645   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9645   -1.5406    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6787   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3928   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1069   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8211   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5352   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2493   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9635   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  2  5  1  1  0  0  0
  6  2  1  0  0  0  0
  7  2  1  0  0  0  0
  8  7  1  0  0  0  0
 10  9  1  0  0  0  0
 11  1  1  1  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 13  8  1  0  0  0  0
 13  9  1  0  0  0  0
 14 13  1  0  0  0  0
 15 13  2  0  0  0  0
 11 16  1  6  0  0  0
 17 12  1  0  0  0  0
 18 17  1  0  0  0  0
 19 18  2  0  0  0  0
 20 18  1  0  0  0  0
 21 18  1  0  0  0  0
 22  4  1  0  0  0  0
 23 22  2  0  0  0  0
 24 22  1  0  0  0  0
 25 24  1  0  0  0  0
 26 25  1  0  0  0  0
 27 26  1  0  0  0  0
 28 27  1  0  0  0  0
 29 28  1  0  0  0  0
 30 29  1  0  0  0  0
 31 30  1  0  0  0  0
 32 31  1  0  0  0  0
 33  6  1  0  0  0  0
 34 33  2  0  0  0  0
 35 33  1  0  0  0  0
 36 35  1  0  0  0  0
 37 36  1  0  0  0  0
 38 36  1  0  0  0  0
 39 38  1  0  0  0  0
 40 39  1  0  0  0  0
 41 40  1  0  0  0  0
 42 41  1  0  0  0  0
 43 42  1  0  0  0  0
 44 43  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0032343

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@](O)(COP(O)(O)=O)COP(O)(=O)OC[C@@]([H])(COC(=O)CCCCCCCCC)OC(=O)CC(O)CCCCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C26H52O14P2/c1-3-5-7-9-10-12-14-16-25(29)36-20-24(40-26(30)17-22(27)15-13-11-8-6-4-2)21-39-42(34,35)38-19-23(28)18-37-41(31,32)33/h22-24,27-28H,3-21H2,1-2H3,(H,34,35)(H2,31,32,33)/t22?,23-,24-/m1/s1

> <INCHI_KEY>
HVCXGYDISAURMK-HEYJASKDSA-N

> <FORMULA>
C26H52O14P2

> <MOLECULAR_WEIGHT>
650.636

> <EXACT_MASS>
650.28323035

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
94

> <JCHEM_AVERAGE_POLARIZABILITY>
68.48065490797524

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2R)-3-({[(2R)-3-(decanoyloxy)-2-[(3-hydroxydecanoyl)oxy]propoxy](hydroxy)phosphoryl}oxy)-2-hydroxypropoxy]phosphonic acid

> <ALOGPS_LOGP>
2.38

> <JCHEM_LOGP>
4.247850440999998

> <ALOGPS_LOGS>
-3.58

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-3

> <JCHEM_PKA>
2.0402061433877954

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.3548792962104041

> <JCHEM_PKA_STRONGEST_BASIC>
-2.798759057600315

> <JCHEM_POLAR_SURFACE_AREA>
215.57999999999996

> <JCHEM_REFRACTIVITY>
152.4853

> <JCHEM_ROTATABLE_BOND_COUNT>
30

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.72e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-3-{[(2R)-3-(decanoyloxy)-2-[(3-hydroxydecanoyl)oxy]propoxy(hydroxy)phosphoryl]oxy}-2-hydroxypropoxyphosphonic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-DEC-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-DEC-15         0                                  
HETATM    1  H   UNK     0       5.199   1.798   0.000  0.00  0.00           H+0
HETATM    2  C   UNK     0      -4.446   0.673   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.772   1.437   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -7.097   0.673   0.000  0.00  0.00           O+0
HETATM    5  H   UNK     0      -3.680  -0.652   0.000  0.00  0.00           H+0
HETATM    6  O   UNK     0      -5.213  -0.652   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      -3.120   1.439   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -1.794   0.673   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0       1.487   0.642   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       2.813  -0.124   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.139   0.642   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.465  -0.124   0.000  0.00  0.00           C+0
HETATM   13  P   UNK     0       0.092   1.210   0.000  0.00  0.00           P+0
HETATM   14  O   UNK     0      -0.583   0.039   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       0.092   2.606   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0       3.511   1.729   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       6.791   0.641   0.000  0.00  0.00           O+0
HETATM   18  P   UNK     0       8.270   1.037   0.000  0.00  0.00           P+0
HETATM   19  O   UNK     0       8.270   2.568   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       9.748   0.641   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       7.504  -0.289   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -8.423   1.437   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -8.423   2.877   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      -9.756   0.665   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0     -11.089   1.437   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0     -12.422   0.665   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0     -13.755   1.437   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0     -15.088   0.665   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -16.421   1.437   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0     -17.754   0.665   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0     -19.087   1.437   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0     -20.420   0.665   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -6.601  -1.436   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -6.601  -2.876   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      -7.934  -0.665   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -9.267  -1.436   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0      -9.267  -2.876   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0     -10.600  -0.665   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0     -11.933  -1.436   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0     -13.266  -0.665   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0     -14.599  -1.436   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0     -15.932  -0.665   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0     -17.265  -1.436   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0     -18.599  -0.665   0.000  0.00  0.00           C+0
CONECT    1   11                                                            
CONECT    2    3    5    6    7                                             
CONECT    3    2    4                                                       
CONECT    4    3   22                                                       
CONECT    5    2                                                            
CONECT    6    2   33                                                       
CONECT    7    2    8                                                       
CONECT    8    7   13                                                       
CONECT    9   10   13                                                       
CONECT   10    9   11                                                       
CONECT   11    1   10   12   16                                             
CONECT   12   11   17                                                       
CONECT   13    8    9   14   15                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   11                                                            
CONECT   17   12   18                                                       
CONECT   18   17   19   20   21                                             
CONECT   19   18                                                            
CONECT   20   18                                                            
CONECT   21   18                                                            
CONECT   22    4   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31                                                            
CONECT   33    6   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36                                                       
CONECT   36   35   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43                                                            
MASTER        0    0    0    0    0    0    0    0   44    0   86    0
END

Synonyms

Not Available

Molecular Formula

C₂₆H₅₂O₁₄P₂

Average Mass

650.636

Monoisotopic Mass

650.28323035

IUPAC Name

[(2R)-3-({[(2R)-3-(decanoyloxy)-2-[(3-hydroxydecanoyl)oxy]propoxy](hydroxy)phosphoryl}oxy)-2-hydroxypropoxy]phosphonic acid

Traditional Name

(2R)-3-{[(2R)-3-(decanoyloxy)-2-[(3-hydroxydecanoyl)oxy]propoxy(hydroxy)phosphoryl]oxy}-2-hydroxypropoxyphosphonic acid

CAS Registry Number

Not Available

SMILES

[H][C@@](O)(COP(O)(O)=O)COP(O)(=O)OC[C@@]([H])(COC(=O)CCCCCCCCC)OC(=O)CC(O)CCCCCCC

InChI Identifier

InChI=1S/C26H52O14P2/c1-3-5-7-9-10-12-14-16-25(29)36-20-24(40-26(30)17-22(27)15-13-11-8-6-4-2)21-39-42(34,35)38-19-23(28)18-37-41(31,32)33/h22-24,27-28H,3-21H2,1-2H3,(H,34,35)(H2,31,32,33)/t22?,23-,24-/m1/s1

InChI Key

HVCXGYDISAURMK-HEYJASKDSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phosphatidylglycerophosphates. These are glycerophosphoglycerophosphates in which two fatty acids are bonded to the 1-glycerol moiety through ester linkages.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerophospholipids

Sub Class

Glycerophosphoglycerophosphates

Direct Parent

Phosphatidylglycerophosphates

Alternative Parents

Substituents

Diacylglycerophosphoglycerophosphate
Sn-glycerol-3-phosphate
Beta-hydroxy acid
Fatty acid ester
Dialkyl phosphate
Monoalkyl phosphate
Dicarboxylic acid or derivatives
Fatty acyl
Alkyl phosphate
Phosphoric acid ester
Hydroxy acid
Organic phosphoric acid derivative
Carboxylic acid ester
Secondary alcohol
Carboxylic acid derivative
Hydrocarbon derivative
Organic oxide
Alcohol
Carbonyl group
Organic oxygen compound
Organooxygen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.17 g/L	ALOGPS
logP	2.38	ALOGPS
logP	4.25	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	1.35	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	-3	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	215.58 Å²	ChemAxon
Rotatable Bond Count	30	ChemAxon
Refractivity	152.49 m³·mol⁻¹	ChemAxon
Polarizability	68.48 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_4) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-0m60-0911515000-09850722e511b3b2d0b0	2019-02-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0a4j-2921302000-c607b54eca66e65564be	2019-02-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-0a4j-6934020000-629c8feba095dfec5968	2019-02-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-0fi1-3910302000-54e6b4f6ed87391e8035	2019-02-23	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-004i-9410100000-58b42c4509540e8f8bc2	2019-02-23	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-004i-9100000000-c7b2830df20a7215da48	2019-02-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-17	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (retained)	2025-10-23	520.9
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	206.8
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-23	642.0
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	696.3
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	632.3
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-23	153.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (retained)	2025-10-23	2403.6
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	688.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	238.8
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	305.5
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	51.3
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	168.8
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	188.2
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	255.7
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (void)	2025-10-23	308.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	241.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	411.4
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	1138.8
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	1099.3

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_1	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](COP(=O)(O)O)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard non polar	2025-10-24	1212.16
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_2	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](O)COP(=O)(O)O)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard non polar	2025-10-24	1520.57
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_3	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](O)COP(=O)(O)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard non polar	2025-10-24	2014.1
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_4	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](O)COP(=O)(O)O)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard non polar	2025-10-24	1443.08
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_5	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](COP(=O)(O)O)O[Si](C)(C)C)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard non polar	2025-10-24	2038.99
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_6	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@@H](COP(=O)(O)O)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard non polar	2025-10-24	1777.77
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_7	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard non polar	2025-10-24	1626.64
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_8	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](O)COP(=O)(O)O)O[Si](C)(C)C)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard non polar	2025-10-24	1750.6
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_9	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](O)COP(=O)(O)O[Si](C)(C)C)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard non polar	2025-10-24	3303.6
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_10	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](O)COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard non polar	2025-10-24	2328.07
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_11	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard non polar	2025-10-24	1838.66
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_12	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@@H](COP(=O)(O)O)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard non polar	2025-10-24	1813.84
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_13	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard non polar	2025-10-24	2577.01
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_14	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard non polar	2025-10-24	1407.49
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_15	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard non polar	2025-10-24	1590.5
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_16	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](O)COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard non polar	2025-10-24	1861.74
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_17	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard non polar	2025-10-24	1770.75
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_18	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard non polar	2025-10-24	1995.1
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_1	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](COP(=O)(O)O)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard polar	2025-10-24	2826.72
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_2	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](O)COP(=O)(O)O)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard polar	2025-10-24	2929.49
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_3	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](O)COP(=O)(O)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard polar	2025-10-24	339.824
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_4	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](O)COP(=O)(O)O)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard polar	2025-10-24	2018.81
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_5	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](COP(=O)(O)O)O[Si](C)(C)C)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard polar	2025-10-24	3740.75
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_6	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@@H](COP(=O)(O)O)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard polar	2025-10-24	1020.7
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_7	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard polar	2025-10-24	1679.02
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_8	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](O)COP(=O)(O)O)O[Si](C)(C)C)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard polar	2025-10-24	2903.47
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_9	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](O)COP(=O)(O)O[Si](C)(C)C)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard polar	2025-10-24	1237.4
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_10	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](O)COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard polar	2025-10-24	2529.36
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_11	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard polar	2025-10-24	1475.59
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_12	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@@H](COP(=O)(O)O)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard polar	2025-10-24	2168.56
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_13	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard polar	2025-10-24	2211.38
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_14	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard polar	2025-10-24	792.114
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_15	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard polar	2025-10-24	1737.49
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_16	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](O)COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard polar	2025-10-24	2933.51
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_17	CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(CCCCCCC)O[Si](C)(C)C	standard polar	2025-10-24	-196.181
Gas Chromatography	PGP(10:0/10:0(3-OH))_TMS_18	CCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CC(O)CCCCCCC	standard polar	2025-10-24	2519.36

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Name	SMPDB/PathBank	Species
Cardiolipin Biosynthesis CL(10:0/10:0(3-OH)/10:0/10:0(3-OH))
Phospholipid Biosynthesis CL(10:0/10:0(3-OH)/10:0/10:0(3-OH))

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0021802	Glycerol 3-phosphate	Cytidine monophosphate	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	Synthesis	PathBank	31602464
MMDBr0021803	PGP(10:0/10:0(3-OH))	PG(10:0(3-OH)/10:0)	Phosphatidylglycerophosphatase B	Dephosphorylation	PathBank	31602464

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Proteobacteria	1	Human ; Human feces; Human feces; pleural fluid plaque; bal	Unknown

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Wishart DS, Li C, Marcu A, Badran H, Pon A, Budinski Z, Patron J, Lipton D, Cao X, Oler E, Li K, Paccoud M, Hong C, Guo AC, Chan C, Wei W, Ramirez-Gaona M: PathBank: a comprehensive pathway database for model organisms. Nucleic Acids Res. 2020 Jan 8;48(D1):D470-D478. doi: 10.1093/nar/gkz861. [PubMed:31602464 ]

Showing metabocard for PGP(10:0/10:0(3-OH)) (MMDBc0032343)

MOL for #<Metabolite:0x00007f2e2c427488>

3D MOL for #<Metabolite:0x00007f2e2c427488>

3D SDF for #<Metabolite:0x00007f2e2c427488>

3D-SDF for #<Metabolite:0x00007f2e2c427488>

PDB for #<Metabolite:0x00007f2e2c427488>

3D PDB for #<Metabolite:0x00007f2e2c427488>

SMILES for #<Metabolite:0x00007f2e2c427488>

INCHI for #<Metabolite:0x00007f2e2c427488>

Structure for #<Metabolite:0x00007f2e2c427488>

3D Structure for #<Metabolite:0x00007f2e2c427488>