MiMeDB: Showing metabocard for 3-hydroxybutanoyl-CoA (MMDBc0054230)

Pharmaceutical

Xenobiotic

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2022-06-05 23:00:18 UTC

Update Date

2025-10-07 16:08:26 UTC

Metabolite ID

MMDBc0054230

Metabolite Identification

Common Name

3-hydroxybutanoyl-CoA

Description

3-hydroxybutanoyl-CoA is a thiolester compound belonging to the class of acyl-CoA derivatives. There is limited literature available on this metabolite, indicating that further research may be necessary to fully understand its biological significance and potential roles in metabolic pathways.

Structure

MOL SDF PDB SMILES InChI

 
  Mrv1533006041517132D          
 
 54 56  0  0  1  0            999 V2000
    5.1694  -12.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8840  -11.7150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5984  -12.1275    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    7.3129  -11.7150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0274  -12.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7418  -11.7150    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.4563  -12.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1708  -11.7150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8852  -12.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5997  -11.7150    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.3142  -12.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0286  -11.7150    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   13.7431  -12.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4576  -11.7150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1720  -12.1275    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8840  -10.8901    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.4563  -12.9524    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.3142  -12.9523    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.0286  -10.8900    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.7431  -11.3025    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7431  -12.9525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.9970  -12.1275    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   16.8220  -12.1275    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.9970  -12.9525    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.1687   -9.1987    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.9937   -9.1987    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   13.2487   -8.4141    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.5812   -7.9292    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.9138   -8.4141    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.0263   -8.1614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6838   -9.8662    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.4787   -9.8662    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.3037   -9.8662    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   14.3037   -9.0412    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.1287   -9.8662    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.3037  -10.6912    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.4875   -7.3425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4875   -8.1675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9165   -8.1675    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.9165   -7.3425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2019   -6.9300    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.7730   -6.9300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0585   -7.3425    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.0585   -8.1675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7730   -8.5800    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.7730   -6.1051    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   15.1944   -8.4162    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.0194   -8.4162    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   16.0194   -7.5912    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.8444   -8.4162    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.0194  -10.3137    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4418  -11.7150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7273  -12.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4385  -10.8902    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  2 16  2  0  0  0  0
  7 17  2  0  0  0  0
 11 18  2  0  0  0  0
 12 19  1  6  0  0  0
 13 20  1  0  0  0  0
 13 21  1  0  0  0  0
 15 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 25 29  1  0  0  0  0
 27 30  1  6  0  0  0
 25 31  1  1  0  0  0
 26 32  1  1  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 33 36  2  0  0  0  0
 37 38  2  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  2  0  0  0  0
 37 41  1  0  0  0  0
 37 42  1  0  0  0  0
 42 43  2  0  0  0  0
 43 44  1  0  0  0  0
 44 45  2  0  0  0  0
 38 45  1  0  0  0  0
 42 46  1  0  0  0  0
 29 39  1  6  0  0  0
 30 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 48 50  2  0  0  0  0
 48 51  1  0  0  0  0
 22 51  1  0  0  0  0
  1 52  1  0  0  0  0
 52 53  1  0  0  0  0
 52 54  1  0  0  0  0
M  END

 
  Mrv1533006041517132D          
 
 54 56  0  0  1  0            999 V2000
    5.1694  -12.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8840  -11.7150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5984  -12.1275    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    7.3129  -11.7150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0274  -12.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7418  -11.7150    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.4563  -12.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1708  -11.7150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8852  -12.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5997  -11.7150    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.3142  -12.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0286  -11.7150    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   13.7431  -12.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4576  -11.7150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1720  -12.1275    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8840  -10.8901    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.4563  -12.9524    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.3142  -12.9523    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.0286  -10.8900    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.7431  -11.3025    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7431  -12.9525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.9970  -12.1275    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   16.8220  -12.1275    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.9970  -12.9525    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.1687   -9.1987    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.9937   -9.1987    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   13.2487   -8.4141    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.5812   -7.9292    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.9138   -8.4141    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.0263   -8.1614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6838   -9.8662    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.4787   -9.8662    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.3037   -9.8662    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   14.3037   -9.0412    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.1287   -9.8662    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.3037  -10.6912    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.4875   -7.3425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4875   -8.1675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9165   -8.1675    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.9165   -7.3425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2019   -6.9300    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.7730   -6.9300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0585   -7.3425    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.0585   -8.1675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7730   -8.5800    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.7730   -6.1051    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   15.1944   -8.4162    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.0194   -8.4162    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   16.0194   -7.5912    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.8444   -8.4162    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.0194  -10.3137    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4418  -11.7150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7273  -12.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4385  -10.8902    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  2 16  2  0  0  0  0
  7 17  2  0  0  0  0
 11 18  2  0  0  0  0
 12 19  1  6  0  0  0
 13 20  1  0  0  0  0
 13 21  1  0  0  0  0
 15 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 25 29  1  0  0  0  0
 27 30  1  6  0  0  0
 25 31  1  1  0  0  0
 26 32  1  1  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 33 36  2  0  0  0  0
 37 38  2  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  2  0  0  0  0
 37 41  1  0  0  0  0
 37 42  1  0  0  0  0
 42 43  2  0  0  0  0
 43 44  1  0  0  0  0
 44 45  2  0  0  0  0
 38 45  1  0  0  0  0
 42 46  1  0  0  0  0
 29 39  1  6  0  0  0
 30 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 48 50  2  0  0  0  0
 48 51  1  0  0  0  0
 22 51  1  0  0  0  0
  1 52  1  0  0  0  0
 52 53  1  0  0  0  0
 52 54  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0054230

> <DATABASE_NAME>
MIME

> <SMILES>
CC(O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N

> <INCHI_IDENTIFIER>
InChI=1S/C25H42N7O18P3S/c1-13(33)8-16(35)54-7-6-27-15(34)4-5-28-23(38)20(37)25(2,3)10-47-53(44,45)50-52(42,43)46-9-14-19(49-51(39,40)41)18(36)24(48-14)32-12-31-17-21(26)29-11-30-22(17)32/h11-14,18-20,24,33,36-37H,4-10H2,1-3H3,(H,27,34)(H,28,38)(H,42,43)(H,44,45)(H2,26,29,30)(H2,39,40,41)/t13?,14-,18-,19-,20+,24-/m1/s1

> <INCHI_KEY>
QHHKKMYHDBRONY-RMNRSTNRSA-N

> <FORMULA>
C25H42N7O18P3S

> <MOLECULAR_WEIGHT>
853.62

> <EXACT_MASS>
853.151989708

> <JCHEM_ACCEPTOR_COUNT>
18

> <JCHEM_ATOM_COUNT>
96

> <JCHEM_AVERAGE_POLARIZABILITY>
74.71024493346692

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
10

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-3-{[2-({2-[(3-hydroxybutanoyl)sulfanyl]ethyl}carbamoyl)ethyl]carbamoyl}-2,2-dimethylpropoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid

> <ALOGPS_LOGP>
-0.62

> <JCHEM_LOGP>
-6.088404706832591

> <ALOGPS_LOGS>
-2.32

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-4

> <JCHEM_PKA>
1.9035538370263239

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.8207476508908789

> <JCHEM_PKA_STRONGEST_BASIC>
4.945907435196925

> <JCHEM_POLAR_SURFACE_AREA>
383.85999999999996

> <JCHEM_REFRACTIVITY>
183.0284

> <JCHEM_ROTATABLE_BOND_COUNT>
22

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.07e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
S-(3-hydroxybutyryl)-coa

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-JUN-15   NONE
TITLE     NULL                                                        
COMPND    MOLECULE:                                                   
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-JUN-15         0                                  
HETATM    1  C   UNK     0       9.650 -22.638   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.983 -21.868   0.000  0.00  0.00           C+0
HETATM    3  S   UNK     0      12.317 -22.638   0.000  0.00  0.00           S+0
HETATM    4  C   UNK     0      13.651 -21.868   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      14.984 -22.638   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0      16.318 -21.868   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0      17.652 -22.638   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      18.985 -21.868   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      20.319 -22.638   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0      21.653 -21.868   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0      22.986 -22.638   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      24.320 -21.868   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      25.654 -22.638   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      26.988 -21.868   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      28.321 -22.638   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      10.983 -20.328   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      17.652 -24.178   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0      22.986 -24.178   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0      24.320 -20.328   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      25.654 -21.098   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      25.654 -24.178   0.000  0.00  0.00           C+0
HETATM   22  P   UNK     0      29.861 -22.638   0.000  0.00  0.00           P+0
HETATM   23  O   UNK     0      31.401 -22.638   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      29.861 -24.178   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      22.715 -17.171   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      24.255 -17.171   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      24.731 -15.706   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      23.485 -14.801   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      22.239 -15.706   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      26.182 -15.235   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      21.810 -18.417   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0      25.160 -18.417   0.000  0.00  0.00           O+0
HETATM   33  P   UNK     0      26.700 -18.417   0.000  0.00  0.00           P+0
HETATM   34  O   UNK     0      26.700 -16.877   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0      28.240 -18.417   0.000  0.00  0.00           O+0
HETATM   36  O   UNK     0      26.700 -19.957   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      17.710 -13.706   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      17.710 -15.246   0.000  0.00  0.00           C+0
HETATM   39  N   UNK     0      20.377 -15.246   0.000  0.00  0.00           N+0
HETATM   40  C   UNK     0      20.377 -13.706   0.000  0.00  0.00           C+0
HETATM   41  N   UNK     0      19.044 -12.936   0.000  0.00  0.00           N+0
HETATM   42  C   UNK     0      16.376 -12.936   0.000  0.00  0.00           C+0
HETATM   43  N   UNK     0      15.043 -13.706   0.000  0.00  0.00           N+0
HETATM   44  C   UNK     0      15.043 -15.246   0.000  0.00  0.00           C+0
HETATM   45  N   UNK     0      16.376 -16.016   0.000  0.00  0.00           N+0
HETATM   46  N   UNK     0      16.376 -11.396   0.000  0.00  0.00           N+0
HETATM   47  O   UNK     0      28.363 -15.710   0.000  0.00  0.00           O+0
HETATM   48  P   UNK     0      29.903 -15.710   0.000  0.00  0.00           P+0
HETATM   49  O   UNK     0      29.903 -14.170   0.000  0.00  0.00           O+0
HETATM   50  O   UNK     0      31.443 -15.710   0.000  0.00  0.00           O+0
HETATM   51  O   UNK     0      29.903 -19.252   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0       8.291 -21.868   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0       6.958 -22.638   0.000  0.00  0.00           C+0
HETATM   54  O   UNK     0       8.285 -20.328   0.000  0.00  0.00           O+0
CONECT    1    2   52                                                       
CONECT    2    1    3   16                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   17                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   18                                                  
CONECT   12   11   13   19                                                  
CONECT   13   12   14   20   21                                             
CONECT   14   13   15                                                       
CONECT   15   14   22                                                       
CONECT   16    2                                                            
CONECT   17    7                                                            
CONECT   18   11                                                            
CONECT   19   12                                                            
CONECT   20   13                                                            
CONECT   21   13                                                            
CONECT   22   15   23   24   51                                             
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25   26   29   31                                                  
CONECT   26   25   27   32                                                  
CONECT   27   26   28   30                                                  
CONECT   28   27   29                                                       
CONECT   29   28   25   39                                                  
CONECT   30   27   47                                                       
CONECT   31   25                                                            
CONECT   32   26   33                                                       
CONECT   33   32   34   35   36                                             
CONECT   34   33                                                            
CONECT   35   33                                                            
CONECT   36   33                                                            
CONECT   37   38   41   42                                                  
CONECT   38   37   39   45                                                  
CONECT   39   38   40   29                                                  
CONECT   40   39   41                                                       
CONECT   41   40   37                                                       
CONECT   42   37   43   46                                                  
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   38                                                       
CONECT   46   42                                                            
CONECT   47   30   48                                                       
CONECT   48   47   49   50   51                                             
CONECT   49   48                                                            
CONECT   50   48                                                            
CONECT   51   48   22                                                       
CONECT   52    1   53   54                                                  
CONECT   53   52                                                            
CONECT   54   52                                                            
MASTER        0    0    0    0    0    0    0    0   54    0  112    0
END

Synonyms

Value	Source
3-Hydroxybutyryl-CoA	ChEBI
beta-Hydroxybutyryl-CoA	ChEBI
beta-Hydroxybutyryl-coenzyme A	ChEBI
coenzyme A, S-(3-Hydroxybutanoate)	ChEBI
S-(3-Hydroxybutanoyl)-CoA	ChEBI
S-(3-Hydroxybutanoyl)-coenzyme A	ChEBI
S-(3-Hydroxybutyryl)-CoA	ChEBI
S-(3-Hydroxybutyryl)-coenzyme A	ChEBI
b-Hydroxybutyryl-CoA	Generator
Β-hydroxybutyryl-CoA	Generator
b-Hydroxybutyryl-coenzyme A	Generator
Β-hydroxybutyryl-coenzyme A	Generator
coenzyme A, S-(3-Hydroxybutanoic acid)	Generator
3-Hydroxybutyryl-coenzyme A	ChEBI
3-Hydroxybutyryl-coenzyme A, (S)-isomer	MeSH
3-Hydroxybutyryl-coenzyme A, (R)-isomer	MeSH

Molecular Formula

C₂₅H₄₂N₇O₁₈P₃S

Average Mass

853.62

Monoisotopic Mass

853.151989708

IUPAC Name

{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-3-{[2-({2-[(3-hydroxybutanoyl)sulfanyl]ethyl}carbamoyl)ethyl]carbamoyl}-2,2-dimethylpropoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid

Traditional Name

S-(3-hydroxybutyryl)-coa

CAS Registry Number

Not Available

SMILES

CC(O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N

InChI Identifier

InChI=1S/C25H42N7O18P3S/c1-13(33)8-16(35)54-7-6-27-15(34)4-5-28-23(38)20(37)25(2,3)10-47-53(44,45)50-52(42,43)46-9-14-19(49-51(39,40)41)18(36)24(48-14)32-12-31-17-21(26)29-11-30-22(17)32/h11-14,18-20,24,33,36-37H,4-10H2,1-3H3,(H,27,34)(H,28,38)(H,42,43)(H,44,45)(H2,26,29,30)(H2,39,40,41)/t13?,14-,18-,19-,20+,24-/m1/s1

InChI Key

QHHKKMYHDBRONY-RMNRSTNRSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 3-hydroxyacyl coas. These are organic compounds containing a 3-hydroxyl acylated coenzyme A derivative.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acyl thioesters

Direct Parent

3-hydroxyacyl CoAs

Alternative Parents

Substituents

Coenzyme a or derivatives
Purine ribonucleoside 3',5'-bisphosphate
Purine ribonucleoside bisphosphate
Purine ribonucleoside diphosphate
Ribonucleoside 3'-phosphate
Pentose phosphate
Pentose-5-phosphate
Beta amino acid or derivatives
Glycosyl compound
N-glycosyl compound
6-aminopurine
Monosaccharide phosphate
Organic pyrophosphate
Pentose monosaccharide
Imidazopyrimidine
Purine
Monoalkyl phosphate
Aminopyrimidine
Imidolactam
N-acyl-amine
N-substituted imidazole
Organic phosphoric acid derivative
Monosaccharide
Pyrimidine
Alkyl phosphate
Fatty amide
Phosphoric acid ester
Tetrahydrofuran
Imidazole
Azole
Heteroaromatic compound
Carbothioic s-ester
Secondary alcohol
Thiocarboxylic acid ester
Carboxamide group
Secondary carboxylic acid amide
Amino acid or derivatives
Sulfenyl compound
Thiocarboxylic acid or derivatives
Organoheterocyclic compound
Azacycle
Oxacycle
Carboxylic acid derivative
Organosulfur compound
Organic oxygen compound
Hydrocarbon derivative
Carbonyl group
Organic nitrogen compound
Primary amine
Organopnictogen compound
Organic oxide
Organooxygen compound
Organonitrogen compound
Alcohol
Amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

3-hydroxyacyl-CoA (CHEBI:37050 )
hydroxybutanoyl-CoA (CHEBI:37050 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	4.07 g/L	ALOGPS
logP	-0.62	ALOGPS
logP	-6.1	ChemAxon
logS	-2.3	ALOGPS
pKa (Strongest Acidic)	0.82	ChemAxon
pKa (Strongest Basic)	4.95	ChemAxon
Physiological Charge	-4	ChemAxon
Hydrogen Acceptor Count	18	ChemAxon
Hydrogen Donor Count	10	ChemAxon
Polar Surface Area	383.86 Å²	ChemAxon
Rotatable Bond Count	22	ChemAxon
Refractivity	183.03 m³·mol⁻¹	ChemAxon
Polarizability	74.71 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-000i-0931000130-d924499294c56a627b62	2017-07-26	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-01p9-1912000000-416f64a8b75913d6ee9c	2017-07-26	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-000i-1920000000-137c383401c378170f3d	2017-07-26	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-053r-9720041570-1667d7f76a22ea47025f	2017-07-26	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-001i-5910220010-688de5c2366fa2409e73	2017-07-26	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-057i-7900100000-b81dd46468dec5a6d312	2017-07-26	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-24	639.4
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-24	548.1
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-24	250.4
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-24	391.8
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-24	353.8
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-24	175.7
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	975.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-24	883.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-24	349.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	147.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-24	402.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	168.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	90.4
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-24	542.5
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-24	520.7
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	76.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	266.5
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-24	676.0
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-24	638.3

Retention Indices

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0038860	3-hydroxybutanoyl-CoA	3-Hydroxybutyric acid	Thioesterase TesA	Hydrolysis	RHEA	34755880

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites
Bacteria/Eubacteria	Actinobacteria	2	Human
Bacteria/Eubacteria	Firmicutes	1
Bacteria	Proteobacteria	1

Exposure Sources

Other Exposures

Source Type	Data Source	Reference
Drugs - Antimicrobial	U.S. Environmental Protection Agency	CompTox
Cosmetics	U.S. Environmental Protection Agency	CompTox
Domestics	U.S. Environmental Protection Agency	CompTox

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

DB03612

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

C05116

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

644065

PDB ID

Not Available

ChEBI ID

37050

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for 3-hydroxybutanoyl-CoA (MMDBc0054230)

MOL for #<Metabolite:0x00007f9ad00b0988>

3D MOL for #<Metabolite:0x00007f9ad00b0988>

3D SDF for #<Metabolite:0x00007f9ad00b0988>

3D-SDF for #<Metabolite:0x00007f9ad00b0988>

PDB for #<Metabolite:0x00007f9ad00b0988>

3D PDB for #<Metabolite:0x00007f9ad00b0988>

SMILES for #<Metabolite:0x00007f9ad00b0988>

INCHI for #<Metabolite:0x00007f9ad00b0988>

Structure for #<Metabolite:0x00007f9ad00b0988>

3D Structure for #<Metabolite:0x00007f9ad00b0988>